                         SEQUENCE LISTING

<110>  Weisburg, William  G.
       Bungo, Jennifer J.
 
<120>  Compositions, Methods and Kits for Determining the Presence of 
       Trichomonas Vaginalis in a Test Sample

<130>  GP142-02.UT

<150>  60/472,028
<151>  2003-05-19

<160>  105   

<170>  PatentIn version 3.2

<210>  1
<211>  32
<212>  DNA
<213>  Trichomonas vaginalis

<400>  1
gccgaagtcc ttcggttaaa gttctaattg gg                                   32


<210>  2
<211>  32
<212>  RNA
<213>  Trichomonas vaginalis

<400>  2
gccgaagucc uucgguuaaa guucuaauug gg                                   32


<210>  3
<211>  32
<212>  DNA
<213>  Trichomonas vaginalis

<400>  3
cccaattaga actttaaccg aaggacttcg gc                                   32


<210>  4
<211>  32
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  4
cccaauuaga acuuuaaccg aaggacuucg gc                                   32


<210>  5
<211>  30
<212>  DNA
<213>  Trichomonas vaginalis

<400>  5
ccattggtgc cttttggtac tgtggatagg                                      30


<210>  6
<211>  30
<212>  RNA
<213>  Trichomonas vaginalis

<400>  6
ccauuggugc cuuuugguac uguggauagg                                      30


<210>  7
<211>  30
<212>  DNA
<213>  Trichomonas vaginalis

<400>  7
cctatccaca gtaccaaaag gcaccaatgg                                      30


<210>  8
<211>  30
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  8
ccuauccaca guaccaaaag gcaccaaugg                                      30


<210>  9
<211>  26
<212>  DNA
<213>  Trichomonas vaginalis

<400>  9
ttccattggt gccttttggt actgtg                                          26


<210>  10
<211>  26
<212>  RNA
<213>  Trichomonas vaginalis

<400>  10
uuccauuggu gccuuuuggu acugug                                          26


<210>  11
<211>  26
<212>  DNA
<213>  Trichomonas vaginalis

<400>  11
cacagtacca aaaggcacca atggaa                                          26


<210>  12
<211>  26
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  12
cacaguacca aaaggcacca auggaa                                          26


<210>  13
<211>  27
<212>  DNA
<213>  Trichomonas vaginalis

<400>  13
ccattggtgc cttttggtac tgtggat                                         27


<210>  14
<211>  27
<212>  RNA
<213>  Trichomonas vaginalis

<400>  14
ccauuggugc cuuuugguac uguggau                                         27


<210>  15
<211>  27
<212>  DNA
<213>  Trichomonas vaginalis

<400>  15
atccacagta ccaaaaggca ccaatgg                                         27


<210>  16
<211>  27
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  16
auccacagua ccaaaaggca ccaaugg                                         27


<210>  17
<211>  24
<212>  DNA
<213>  Trichomonas vaginalis

<400>  17
ccattggtgc cttttggtac tgtg                                            24


<210>  18
<211>  24
<212>  RNA
<213>  Trichomonas vaginalis

<400>  18
ccauuggugc cuuuugguac ugug                                            24


<210>  19
<211>  24
<212>  DNA
<213>  Trichomonas vaginalis

<400>  19
cacagtacca aaaggcacca atgg                                            24


<210>  20
<211>  24
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  20
cacaguacca aaaggcacca augg                                            24


<210>  21
<211>  35
<212>  DNA
<213>  Trichomonas vaginalis

<400>  21
gctaacgagc gagattatcg ccaattattt acttt                                35


<210>  22
<211>  35
<212>  RNA
<213>  Trichomonas vaginalis

<400>  22
gcuaacgagc gagauuaucg ccaauuauuu acuuu                                35


<210>  23
<211>  35
<212>  DNA
<213>  Trichomonas vaginalis

<400>  23
aaagtaaata attggcgata atctcgctcg ttagc                                35


<210>  24
<211>  35
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  24
aaaguaaaua auuggcgaua aucucgcucg uuagc                                35


<210>  25
<211>  30
<212>  DNA
<213>  Trichomonas vaginalis

<400>  25
actccctgcg attttagcag gtggaagagg                                      30


<210>  26
<211>  30
<212>  RNA
<213>  Trichomonas vaginalis

<400>  26
acucccugcg auuuuagcag guggaagagg                                      30


<210>  27
<211>  30
<212>  DNA
<213>  Trichomonas vaginalis

<400>  27
cctcttccac ctgctaaaat cgcagggagt                                      30


<210>  28
<211>  30
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  28
ccucuuccac cugcuaaaau cgcagggagu                                      30


<210>  29
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  29
atatccacgg gtagcagcag gc                                              22


<210>  30
<211>  22
<212>  RNA
<213>  Trichomonas vaginalis

<400>  30
auauccacgg guagcagcag gc                                              22


<210>  31
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  31
gcctgctgct acccgtggat at                                              22


<210>  32
<211>  22
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  32
gccugcugcu acccguggau au                                              22


<210>  33
<211>  33
<212>  DNA
<213>  Trichomonas vaginalis

<400>  33
gcgttgattc agctaacgag cgagattatc gcc                                  33


<210>  34
<211>  33
<212>  RNA
<213>  Trichomonas vaginalis

<400>  34
gcguugauuc agcuaacgag cgagauuauc gcc                                  33


<210>  35
<211>  33
<212>  DNA
<213>  Trichomonas vaginalis

<400>  35
ggcgataatc tcgctcgtta gctgaatcaa cgc                                  33


<210>  36
<211>  33
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  36
ggcgauaauc ucgcucguua gcugaaucaa cgc                                  33


<210>  37
<211>  50
<212>  DNA
<213>  Trichomonas vaginalis

<400>  37
ctgcgatttt agcaggtgga agagggtagc aataacaggt ccgtgatgcc                50


<210>  38
<211>  50
<212>  RNA
<213>  Trichomonas vaginalis

<400>  38
cugcgauuuu agcaggugga agaggguagc aauaacaggu ccgugaugcc                50


<210>  39
<211>  50
<212>  DNA
<213>  Trichomonas vaginalis

<400>  39
ggcatcacgg acctgttatt gctaccctct tccacctgct aaaatcgcag                50


<210>  40
<211>  50
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  40
ggcaucacgg accuguuauu gcuacccucu uccaccugcu aaaaucgcag                50


<210>  41
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  41
gcgttgattc agctaacgag cg                                              22


<210>  42
<211>  22
<212>  RNA
<213>  Trichomonas vaginalis

<400>  42
gcguugauuc agcuaacgag cg                                              22


<210>  43
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  43
cgctcgttag ctgaatcaac gc                                              22


<210>  44
<211>  22
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  44
cgcucguuag cugaaucaac gc                                              22


<210>  45
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  45
gctaacgagc gagattatcg cc                                              22


<210>  46
<211>  22
<212>  RNA
<213>  Trichomonas vaginalis

<400>  46
gcuaacgagc gagauuaucg cc                                              22


<210>  47
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  47
ggcgataatc tcgctcgtta gc                                              22


<210>  48
<211>  22
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  48
ggcgauaauc ucgcucguua gc                                              22


<210>  49
<211>  25
<212>  DNA
<213>  Trichomonas vaginalis

<400>  49
ctgcgatttt agcaggtgga agagg                                           25


<210>  50
<211>  25
<212>  RNA
<213>  Trichomonas vaginalis

<400>  50
cugcgauuuu agcaggugga agagg                                           25


<210>  51
<211>  25
<212>  DNA
<213>  Trichomonas vaginalis

<400>  51
cctcttccac ctgctaaaat cgcag                                           25


<210>  52
<211>  25
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  52
ccucuuccac cugcuaaaau cgcag                                           25


<210>  53
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  53
gcaataacag gtccgtgatg cc                                              22


<210>  54
<211>  22
<212>  RNA
<213>  Trichomonas vaginalis

<400>  54
gcaauaacag guccgugaug cc                                              22


<210>  55
<211>  22
<212>  DNA
<213>  Trichomonas vaginalis

<400>  55
ggcatcacgg acctgttatt gc                                              22


<210>  56
<211>  22
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  56
ggcaucacgg accuguuauu gc                                              22


<210>  57
<211>  51
<212>  DNA
<213>  Trichomonas vaginalis

<400>  57
ggtagcagca ggcgcgaaac tttcccactc gagactttcg gaggaggtaa t              51


<210>  58
<211>  51
<212>  RNA
<213>  Trichomonas vaginalis

<400>  58
gguagcagca ggcgcgaaac uuucccacuc gagacuuucg gaggagguaa u              51


<210>  59
<211>  51
<212>  DNA
<213>  Trichomonas vaginalis

<400>  59
attacctcct ccgaaagtct cgagtgggaa agtttcgcgc ctgctgctac c              51


<210>  60
<211>  51
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  60
auuaccuccu ccgaaagucu cgagugggaa aguuucgcgc cugcugcuac c              51


<210>  61
<211>  43
<212>  DNA
<213>  Trichomonas vaginalis

<400>  61
accgtaccga aacctagcag agggccagtc tggtgccagc agc                       43


<210>  62
<211>  43
<212>  RNA
<213>  Trichomonas vaginalis

<400>  62
accguaccga aaccuagcag agggccaguc uggugccagc agc                       43


<210>  63
<211>  43
<212>  DNA
<213>  Trichomonas vaginalis

<400>  63
gctgctggca ccagactggc cctctgctag gtttcggtac ggt                       43


<210>  64
<211>  43
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  64
gcugcuggca ccagacuggc ccucugcuag guuucgguac ggu                       43


<210>  65
<211>  16
<212>  DNA
<213>  Trichomonas vaginalis

<400>  65
ggtagcagca ggcgcg                                                     16


<210>  66
<211>  16
<212>  RNA
<213>  Trichomonas vaginalis

<400>  66
gguagcagca ggcgcg                                                     16


<210>  67
<211>  16
<212>  DNA
<213>  Trichomonas vaginalis

<400>  67
cgcgcctgct gctacc                                                     16


<210>  68
<211>  16
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  68
cgcgccugcu gcuacc                                                     16


<210>  69
<211>  20
<212>  DNA
<213>  Trichomonas vaginalis

<400>  69
ccactcgaga ctttcggagg                                                 20


<210>  70
<211>  20
<212>  RNA
<213>  Trichomonas vaginalis

<400>  70
ccacucgaga cuuucggagg                                                 20


<210>  71
<211>  20
<212>  DNA
<213>  Trichomonas vaginalis

<400>  71
cctccgaaag tctcgagtgg                                                 20


<210>  72
<211>  20
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  72
ccuccgaaag ucucgagugg                                                 20


<210>  73
<211>  21
<212>  DNA
<213>  Trichomonas vaginalis

<400>  73
gagactttcg gaggaggtaa t                                               21


<210>  74
<211>  21
<212>  RNA
<213>  Trichomonas vaginalis

<400>  74
gagacuuucg gaggagguaa u                                               21


<210>  75
<211>  21
<212>  DNA
<213>  Trichomonas vaginalis

<400>  75
attacctcct ccgaaagtct c                                               21


<210>  76
<211>  21
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  76
auuaccuccu ccgaaagucu c                                               21


<210>  77
<211>  23
<212>  DNA
<213>  Trichomonas vaginalis

<400>  77
accgtaccga aacctagcag agg                                             23


<210>  78
<211>  23
<212>  RNA
<213>  Trichomonas vaginalis

<400>  78
accguaccga aaccuagcag agg                                             23


<210>  79
<211>  23
<212>  DNA
<213>  Trichomonas vaginalis

<400>  79
cctctgctag gtttcggtac ggt                                             23


<210>  80
<211>  23
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  80
ccucugcuag guuucgguac ggu                                             23


<210>  81
<211>  23
<212>  DNA
<213>  Trichomonas vaginalis

<400>  81
cgaaacctag cagagggcca gtc                                             23


<210>  82
<211>  23
<212>  RNA
<213>  Trichomonas vaginalis

<400>  82
cgaaaccuag cagagggcca guc                                             23


<210>  83
<211>  23
<212>  DNA
<213>  Trichomonas vaginalis

<400>  83
gactggccct ctgctaggtt tcg                                             23


<210>  84
<211>  23
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  84
gacuggcccu cugcuagguu ucg                                             23


<210>  85
<211>  19
<212>  DNA
<213>  Trichomonas vaginalis

<400>  85
ccagtctggt gccagcagc                                                  19


<210>  86
<211>  19
<212>  RNA
<213>  Trichomonas vaginalis

<400>  86
ccagucuggu gccagcagc                                                  19


<210>  87
<211>  19
<212>  DNA
<213>  Trichomonas vaginalis

<400>  87
gctgctggca ccagactgg                                                  19


<210>  88
<211>  19
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  88
gcugcuggca ccagacugg                                                  19


<210>  89
<211>  27
<212>  DNA
<213>  Artificial

<220>
<223>  T7 RNA polymerase promoter sequence

<400>  89
aatttaatac gactcactat agggaga                                         27


<210>  90
<211>  133
<212>  DNA
<213>  Trichomonas vaginalis

<400>  90
gcgttgattc agctaacgag cgagattatc gccaattatt tactttgccg aagtccttcg     60

gttaaagttc taattgggac tccctgcgat tttagcaggt ggaagagggt agcaataaca    120

ggtccgtgat gcc                                                       133


<210>  91
<211>  133
<212>  RNA
<213>  Trichomonas vaginalis

<400>  91
gcguugauuc agcuaacgag cgagauuauc gccaauuauu uacuuugccg aaguccuucg     60

guuaaaguuc uaauugggac ucccugcgau uuuagcaggu ggaagagggu agcaauaaca    120

gguccgugau gcc                                                       133


<210>  92
<211>  133
<212>  DNA
<213>  Trichomonas vaginalis

<400>  92
ggcatcacgg acctgttatt gctaccctct tccacctgct aaaatcgcag ggagtcccaa     60

ttagaacttt aaccgaagga cttcggcaaa gtaaataatt ggcgataatc tcgctcgtta    120

gctgaatcaa cgc                                                       133


<210>  93
<211>  133
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  93
ggcaucacgg accuguuauu gcuacccucu uccaccugcu aaaaucgcag ggagucccaa     60

uuagaacuuu aaccgaagga cuucggcaaa guaaauaauu ggcgauaauc ucgcucguua    120

gcugaaucaa cgc                                                       133


<210>  94
<211>  145
<212>  DNA
<213>  Trichomonas vaginalis

<400>  94
ggtagcagca ggcgcgaaac tttcccactc gagactttcg gaggaggtaa tgaccagttc     60

cattggtgcc ttttggtact gtggataggg gtacggtttt ccaccgtacc gaaacctagc    120

agagggccag tctggtgcca gcagc                                          145


<210>  95
<211>  145
<212>  RNA
<213>  Trichomonas vaginalis

<400>  95
gguagcagca ggcgcgaaac uuucccacuc gagacuuucg gaggagguaa ugaccaguuc     60

cauuggugcc uuuugguacu guggauaggg guacgguuuu ccaccguacc gaaaccuagc    120

agagggccag ucuggugcca gcagc                                          145


<210>  96
<211>  145
<212>  DNA
<213>  Trichomonas vaginalis

<400>  96
gctgctggca ccagactggc cctctgctag gtttcggtac ggtggaaaac cgtaccccta     60

tccacagtac caaaaggcac caatggaact ggtcattacc tcctccgaaa gtctcgagtg    120

ggaaagtttc gcgcctgctg ctacc                                          145


<210>  97
<211>  145
<212>  RNA
<213>  Artificial

<220>
<223>  RNA equivalent of Trichomonas vaginalis DNA

<400>  97
gcugcuggca ccagacuggc ccucugcuag guuucgguac gguggaaaac cguaccccua     60

uccacaguac caaaaggcac caauggaacu ggucauuacc uccuccgaaa gucucgagug    120

ggaaaguuuc gcgccugcug cuacc                                          145


<210>  98
<211>  33
<212>  DNA
<213>  Artificial

<220>
<223>  Polynucleotide having a 3' poly (dA)30 tail and a 5' poly (dT)3 
       flexible linker for use in a capture probe

<400>  98
tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa                                  33


<210>  99
<211>  55
<212>  DNA
<213>  Artificial

<220>
<223>  Capture probe having a 5' region complementary to 18S rRNA of 
       Trichomonas vaginalis and a 3' region having a 3' poly  (dA)14 
       tail and a 5' poly (dT)3 flexible linker

<400>  99
gcctgctgct acccgtggat attttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa          55


<210>  100
<211>  49
<212>  DNA
<213>  Artificial

<220>
<223>  Promoter-primer having a 5' region T7 RNA polymerase promoter 
       sequence and a 3' region complementary to 18S rRNA of Trichomonas
       vaginalis

<400>  100
aatttaatac gactcactat agggagaggc atcacggacc tgttattgc                 49


<210>  101
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Promoter-primer having a 5' region T7 RNA polymerase promoter 
       sequence and a 3' region complementary to 18S rRNA of Trichomonas
       vaginalis

<400>  101
aatttaatac gactcactat agggagacct ctgctaggtt tcggtacggt                50


<210>  102
<211>  50
<212>  DNA
<213>  Artificial

<220>
<223>  Promoter-primer having a 5' region T7 RNA polymerase promoter 
       sequence and a 3' region complementary to 18S rRNA of Trichomonas
       vaginalis

<400>  102
aatttaatac gactcactat agggagagac tggccctctg ctaggtttcg                50


<210>  103
<211>  46
<212>  DNA
<213>  Artificial

<220>
<223>  Promoter-primer having a 5' region T7 RNA polymerase promoter 
       sequence and a 3' region complementary to 18S rRNA of Trichomonas
       vaginalis

<400>  103
aatttaatac gactcactat agggagagct gctggcacca gactgg                    46


<210>  104
<211>  52
<212>  DNA
<213>  Artificial

<220>
<223>  Promoter-primer having a 5' region T7 RNA polymerase promoter 
       sequence and a 3' region complementary to 18S rRNA of Trichomonas
       vaginalis

<400>  104
aatttaatac gactcactat agggagacct cttccacctg ctaaaatcgc ag             52


<210>  105
<211>  49
<212>  DNA
<213>  Artificial

<220>
<223>  Promoter-primer having a 5' region T7 RNA polymerase promoter 
       sequence and a 3' region complementary to 18S rRNA of Trichomonas
       vaginalis

<400>  105
aatttaatac gactcactat agggagaggc atcacggacc tgttattgc                 49


