Table 41A. Potential Biomarkers for Prostate Cancer - LNCaP Cell


Gene        Accession     PNSEQIDNO        ProteinID     AASEQIDNO        Description                                                                                       
AMACR       NM_014324     SEQ ID NO:32757  NP_055139     SEQ ID NO:32813  alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]                                            
AMACR*      NM_203382     SEQ ID NO:32758  NP_976316     SEQ ID NO:32814  alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens]                                            
AR          NM_000044     SEQ ID NO:32759  NP_000035     SEQ ID NO:32815  androgen receptor isoform 1 [Homo sapiens]                                                        
AR          NM_000044     SEQ ID NO:32759  NP_000035     SEQ ID NO:32815  androgen receptor isoform 1 [Homo sapiens]                                                        
AR          NM_001011645  SEQ ID NO:32760  NP_001011645  SEQ ID NO:32816  androgen receptor isoform 2 [Homo sapiens]                                                        
ARF4*       NM_001660     SEQ ID NO:21467  NP_001651     SEQ ID NO:22054  ADP-ribosylation factor 4 [Homo sapiens]                                                          
BSG*        NM_001728     SEQ ID NO:32761  NP_001719     SEQ ID NO:32817  basigin isoform 1 [Homo sapiens]                                                                  
BSG*        NM_198589     SEQ ID NO:32762  NP_940991     SEQ ID NO:32818  basigin isoform 2 [Homo sapiens]                                                                  
BSG*        NM_198590     SEQ ID NO:32763  NP_940992     SEQ ID NO:32819  basigin isoform 3 [Homo sapiens]                                                                  
BSG*        NM_198591     SEQ ID NO:32764  NP_940993     SEQ ID NO:32820  basigin isoform 4 [Homo sapiens]                                                                  
C21orf34    NM_001005732  SEQ ID NO:23296  NP_001005732  SEQ ID NO:23627  hypothetical protein LOC388815 isoform a [Homo sapiens]                                           
C21orf34    NM_001005733  SEQ ID NO:23297  NP_001005733  SEQ ID NO:23628  hypothetical protein LOC388815 isoform a [Homo sapiens]                                           
C21orf34    NM_001005734  SEQ ID NO:23298  NP_001005734  SEQ ID NO:23629  hypothetical protein LOC388815 isoform b [Homo sapiens]                                           
C6orf96*    NM_017909     SEQ ID NO:32765  NP_060379     SEQ ID NO:32821  hypothetical protein LOC55005 [Homo sapiens]                                                      
CCNB1       NM_031966     SEQ ID NO:30482  NP_114172     SEQ ID NO:30745  cyclin B1 [Homo sapiens]                                                                          
CCT6A*      NM_001009186  SEQ ID NO:32766  NP_001009186  SEQ ID NO:32822  chaperonin containing TCP1, subunit 6A isoform b [Homo sapiens]                                   
CCT6A*      NM_001762     SEQ ID NO:32767  NP_001753     SEQ ID NO:32823  chaperonin containing TCP1, subunit 6A isoform a [Homo sapiens]                                   
CNNM2*      NM_017649     SEQ ID NO:58     NP_060119     SEQ ID NO:426    cyclin M2 isoform 1 [Homo sapiens]                                                                
CNNM2*      NM_199076     SEQ ID NO:59     NP_951058     SEQ ID NO:427    cyclin M2 isoform 2 [Homo sapiens]                                                                
CNNM2*      NM_199077     SEQ ID NO:60     NP_951059     SEQ ID NO:428    cyclin M2 isoform 3 [Homo sapiens]                                                                
CYCS        NM_018947     SEQ ID NO:5196   NP_061820     SEQ ID NO:6030   cytochrome c [Homo sapiens]                                                                       
DEPDC1*     NM_017779     SEQ ID NO:32768  NP_060249     SEQ ID NO:32824  DEP domain containing 1 [Homo sapiens]                                                            
DPP6*       NM_001039350  SEQ ID NO:32769  NP_001034439  SEQ ID NO:32825  dipeptidyl-peptidase 6 isoform 3 [Homo sapiens]                                                   
DPP6*       NM_001936     SEQ ID NO:32770  NP_001927     SEQ ID NO:32826  dipeptidyl-peptidase 6 isoform 2 [Homo sapiens]                                                   
DPP6*       NM_130797     SEQ ID NO:32771  NP_570629     SEQ ID NO:32827  dipeptidyl-peptidase 6 isoform 1 [Homo sapiens]                                                   
EPB41L1*    NM_012156     SEQ ID NO:1107   NP_036288     SEQ ID NO:1390   erythrocyte membrane protein band 4.1-like 1 isoform a [Homo sapiens]                             
EPB41L1*    NM_177996     SEQ ID NO:1108   NP_818932     SEQ ID NO:1391   erythrocyte membrane protein band 4.1-like 1 isoform b [Homo sapiens]                             
ETV1*       NM_004956     SEQ ID NO:5241   NP_004947     SEQ ID NO:6075   ets variant gene 1 [Homo sapiens]                                                                 
FAM111B*    NM_198947     SEQ ID NO:30506  NP_945185     SEQ ID NO:30769  hypothetical protein LOC374393 [Homo sapiens]                                                     
FBN2*       NM_001999     SEQ ID NO:20629  NP_001990     SEQ ID NO:20896  fibrillin 2 precursor [Homo sapiens]                                                              
FLJ20152*   NM_001034850  SEQ ID NO:8513   NP_001030022  SEQ ID NO:9841   hypothetical protein LOC54463 isoform 1 [Homo sapiens]                                            
FLJ20152*   NM_019000     SEQ ID NO:8514   NP_061873     SEQ ID NO:9842   hypothetical protein LOC54463 isoform 2 [Homo sapiens]                                            
FLJ39739*   NM_207400     SEQ ID NO:30522  NP_997283     SEQ ID NO:30785  hypothetical protein LOC388685 [Homo sapiens]                                                     
FLJ42117*   NM_198463     SEQ ID NO:27760  NP_940865     SEQ ID NO:28762  hypothetical protein LOC200844 [Homo sapiens]                                                     
FOLH1*      NM_004476     SEQ ID NO:25387  NP_004467     SEQ ID NO:25527  folate hydrolase 1 isoform 1 [Homo sapiens]                                                       
GLIPR1*     NM_006851     SEQ ID NO:19096  NP_006842     SEQ ID NO:19500  glioma pathogenesis-related protein [Homo sapiens]                                                
GNB1        NM_002074     SEQ ID NO:131    NP_002065     SEQ ID NO:499    guanine nucleotide-binding protein, beta-1 subunit [Homo sapiens]                                 
GPR126*     NM_001032394  SEQ ID NO:32772  NP_001027566  SEQ ID NO:32828  G protein-coupled receptor 126 alpha 2 [Homo sapiens]                                             
GPR126*     NM_001032395  SEQ ID NO:32773  NP_001027567  SEQ ID NO:32829  G protein-coupled receptor 126 beta 2 [Homo sapiens]                                              
GPR126*     NM_020455     SEQ ID NO:32774  NP_065188     SEQ ID NO:32830  G protein-coupled receptor 126 alpha 1 [Homo sapiens]                                             
GPR126*     NM_198569     SEQ ID NO:32775  NP_940971     SEQ ID NO:32831  G protein-coupled receptor 126 beta 1 [Homo sapiens]                                              
GTF2H2      NM_001515     SEQ ID NO:2740   NP_001506     SEQ ID NO:3096   general transcription factor IIH, polypeptide 2, 44kD subunit [Homo sapiens]                      
GULP1*      NM_016315     SEQ ID NO:8602   NP_057399     SEQ ID NO:9930   GULP, engulfment adaptor PTB domain containing 1 [Homo sapiens]                                   
GULP1*      NM_016315     SEQ ID NO:8602   NP_057399     SEQ ID NO:9930   GULP, engulfment adaptor PTB domain containing 1 [Homo sapiens]                                   
GULP1*      NM_016315     SEQ ID NO:8602   NP_057399     SEQ ID NO:9930   GULP, engulfment adaptor PTB domain containing 1 [Homo sapiens]                                   
HGD*        NM_000187     SEQ ID NO:32776  NP_000178     SEQ ID NO:32832  homogentisate 1,2-dioxygenase [Homo sapiens]                                                      
HRB2*       NM_007043     SEQ ID NO:19108  NP_008974     SEQ ID NO:19512  HIV-1 rev binding protein 2 [Homo sapiens]                                                        
HSPB6       NM_144617     SEQ ID NO:32777  NP_653218     SEQ ID NO:32833  heat shock protein, alpha-crystallin-related, B6 [Homo sapiens]                                   
HYPK        NM_016400     SEQ ID NO:8632   NP_057484     SEQ ID NO:9960   Huntingtin interacting protein K [Homo sapiens]                                                   
ITGA1*      NM_181501     SEQ ID NO:1149   NP_852478     SEQ ID NO:1432   integrin, alpha 1 precursor [Homo sapiens]                                                        
KIAA0101*   NM_001029989  SEQ ID NO:32778  NP_001025160  SEQ ID NO:32834  hypothetical protein LOC9768 isoform 2 [Homo sapiens]                                             
KIAA0101*   NM_014736     SEQ ID NO:32779  NP_055551     SEQ ID NO:32835  hypothetical protein LOC9768 isoform 1 [Homo sapiens]                                             
KIAA0586*   NM_014749     SEQ ID NO:32780  NP_055564     SEQ ID NO:32836  hypothetical protein LOC9786 [Homo sapiens]                                                       
KIAA1244*   NM_020340     SEQ ID NO:5358   NP_065073     SEQ ID NO:6192   hypothetical protein LOC57221 [Homo sapiens]                                                      
LOC202451*  XM_928403     SEQ ID NO:5408   XP_933496     SEQ ID NO:6242   PREDICTED: hypothetical protein XP_933496 [Homo sapiens]                                          
LOC202451*  XM_941101     SEQ ID NO:5409   XP_946194     SEQ ID NO:6243   PREDICTED: hypothetical protein XP_946194 [Homo sapiens]                                          
LOC644379*  XM_372273     SEQ ID NO:32781  XP_372273     SEQ ID NO:32837  PREDICTED: similar to Serine/threonine-protein kinase PRKX (Protein kinase PKX1) [Homo sapiens]   
LRRIQ1*     NM_032165     SEQ ID NO:32782  NP_115541     SEQ ID NO:32838  leucine-rich repeats and IQ motif containing 1 [Homo sapiens]                                     
LSM11       NM_173491     SEQ ID NO:32783  NP_775762     SEQ ID NO:32839  LSM11, U7 small nuclear RNA associated [Homo sapiens]                                             
LSM8*       NM_016200     SEQ ID NO:32784  NP_057284     SEQ ID NO:32840  U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]                                           
LUZP2*      NM_001009909  SEQ ID NO:32785  NP_001009909  SEQ ID NO:32841  leucine zipper protein 2 [Homo sapiens]                                                           
MAGEA2*     NM_005361     SEQ ID NO:32786  NP_005352     SEQ ID NO:32842  melanoma antigen family A, 2 [Homo sapiens]                                                       
MAGEA2*     NM_175742     SEQ ID NO:32787  NP_786884     SEQ ID NO:32843  melanoma antigen family A, 2 [Homo sapiens]                                                       
MAGEA2*     NM_175743     SEQ ID NO:32788  NP_786885     SEQ ID NO:32844  melanoma antigen family A, 2 [Homo sapiens]                                                       
MAGEA2B*    NM_153488     SEQ ID NO:32789  NP_705692     SEQ ID NO:32845  melanoma antigen family A, 2B [Homo sapiens]                                                      
MARCH7*     NM_022826     SEQ ID NO:28085  NP_073737     SEQ ID NO:29087  axotrophin [Homo sapiens]                                                                         
MGA*        XM_031689     SEQ ID NO:8872   XP_031689     SEQ ID NO:10200  PREDICTED: MAX dimerization protein 5 isoform 1 [Homo sapiens]                                    
MGA*        XM_932720     SEQ ID NO:8873   XP_937813     SEQ ID NO:10201  PREDICTED: MAX dimerization protein 5 isoform 2 [Homo sapiens]                                    
MGA*        XM_932722     SEQ ID NO:8874   XP_937815     SEQ ID NO:10202  PREDICTED: MAX dimerization protein 5 isoform 3 [Homo sapiens]                                    
MGA*        XM_932727     SEQ ID NO:8875   XP_937820     SEQ ID NO:10203  PREDICTED: MAX dimerization protein 5 isoform 4 [Homo sapiens]                                    
MGA*        XM_939296     SEQ ID NO:8876   XP_944389     SEQ ID NO:10204  PREDICTED: similar to MAX-interacting protein isoform 5 [Homo sapiens]                            
MGA*        XM_944092     SEQ ID NO:8877   XP_949185     SEQ ID NO:10205  PREDICTED: similar to MAX-interacting protein isoform 6 [Homo sapiens]                            
MGA*        XM_944095     SEQ ID NO:8878   XP_949188     SEQ ID NO:10206  PREDICTED: similar to MAX-interacting protein isoform 7 [Homo sapiens]                            
MGA*        XM_944099     SEQ ID NO:8879   XP_949192     SEQ ID NO:10207  PREDICTED: similar to MAX-interacting protein isoform 8 [Homo sapiens]                            
MGC15523    NM_001037984  SEQ ID NO:32790  NP_001033073  SEQ ID NO:32846  hypothetical protein LOC124565 isoform a [Homo sapiens]                                           
MGC15523    NM_138570     SEQ ID NO:32791  NP_612637     SEQ ID NO:32847  hypothetical protein LOC124565 isoform b [Homo sapiens]                                           
MYO6*       NM_004999     SEQ ID NO:32792  NP_004990     SEQ ID NO:32848  myosin VI [Homo sapiens]                                                                          
MYO6*       NM_004999     SEQ ID NO:32792  NP_004990     SEQ ID NO:32848  myosin VI [Homo sapiens]                                                                          
MYO6*       NM_004999     SEQ ID NO:32792  NP_004990     SEQ ID NO:32848  myosin VI [Homo sapiens]                                                                          
NAT5        NM_016100     SEQ ID NO:32793  NP_057184     SEQ ID NO:32849  N-acetyltransferase 5 isoform a [Homo sapiens]                                                    
NAT5        NM_181528     SEQ ID NO:32794  NP_852669     SEQ ID NO:32850  N-acetyltransferase 5 isoform c [Homo sapiens]                                                    
NETO1*      NM_138999     SEQ ID NO:32795  NP_620552     SEQ ID NO:32851  neuropilin- and tolloid-like protein 1 isoform 1 precursor [Homo sapiens]                         
OR51E2*     NM_030774     SEQ ID NO:21829  NP_110401     SEQ ID NO:22416  olfactory receptor, family 51, subfamily E, member 2 [Homo sapiens]                               
OXA1L       NM_005015     SEQ ID NO:23485  NP_005006     SEQ ID NO:23816  oxidase (cytochrome c) assembly 1-like [Homo sapiens]                                             
PCBP2*      NM_005016     SEQ ID NO:1997   NP_005007     SEQ ID NO:2296   poly(rC)-binding protein 2 isoform a [Homo sapiens]                                               
PCBP2*      NM_031989     SEQ ID NO:1998   NP_114366     SEQ ID NO:2297   poly(rC)-binding protein 2 isoform b [Homo sapiens]                                               
PCYT2*      NM_002861     SEQ ID NO:32796  NP_002852     SEQ ID NO:32852  phosphate cytidylyltransferase 2, ethanolamine [Homo sapiens]                                     
PDE4DIP*    NM_001002810  SEQ ID NO:14312  NP_001002810  SEQ ID NO:14726  phosphodiesterase 4D interacting protein isoform 4 [Homo sapiens]                                 
PDE4DIP*    NM_001002811  SEQ ID NO:30648  NP_001002811  SEQ ID NO:30911  phosphodiesterase 4D interacting protein isoform 5 [Homo sapiens]                                 
PDE4DIP*    NM_001002812  SEQ ID NO:14313  NP_001002812  SEQ ID NO:14727  phosphodiesterase 4D interacting protein isoform 2 [Homo sapiens]                                 
PDE4DIP*    NM_014644     SEQ ID NO:14314  NP_055459     SEQ ID NO:14728  phosphodiesterase 4D interacting protein isoform 1 [Homo sapiens]                                 
PDE4DIP*    NM_022359     SEQ ID NO:14315  NP_071754     SEQ ID NO:14729  phosphodiesterase 4D interacting protein isoform 3 [Homo sapiens]                                 
PDE8B*      NM_001029851  SEQ ID NO:32797  NP_001025022  SEQ ID NO:32853  phosphodiesterase 8B isoform 3 [Homo sapiens]                                                     
PDE8B*      NM_001029852  SEQ ID NO:32798  NP_001025023  SEQ ID NO:32854  phosphodiesterase 8B isoform 5 [Homo sapiens]                                                     
PDE8B*      NM_001029853  SEQ ID NO:32799  NP_001025024  SEQ ID NO:32855  phosphodiesterase 8B isoform 4 [Homo sapiens]                                                     
PDE8B*      NM_001029854  SEQ ID NO:32800  NP_001025025  SEQ ID NO:32856  phosphodiesterase 8B isoform 2 [Homo sapiens]                                                     
PDE8B*      NM_003719     SEQ ID NO:32801  NP_003710     SEQ ID NO:32857  phosphodiesterase 8B isoform 1 [Homo sapiens]                                                     
PEG3*       NM_006210     SEQ ID NO:5662   NP_006201     SEQ ID NO:6496   paternally expressed 3 [Homo sapiens]                                                             
PELO*       NM_015946     SEQ ID NO:1210   NP_057030     SEQ ID NO:1493   pelota homolog [Homo sapiens]                                                                     
PKM2*       NM_002654     SEQ ID NO:2873   NP_002645     SEQ ID NO:3229   pyruvate kinase 3 isoform 1 [Homo sapiens]                                                        
PKM2*       NM_182470     SEQ ID NO:2874   NP_872270     SEQ ID NO:3230   pyruvate kinase 3 isoform 2 [Homo sapiens]                                                        
PKM2*       NM_182471     SEQ ID NO:2875   NP_872271     SEQ ID NO:3231   pyruvate kinase 3 isoform 2 [Homo sapiens]                                                        
POPDC3*     NM_022361     SEQ ID NO:32802  NP_071756     SEQ ID NO:32858  popeye protein 3 [Homo sapiens]                                                                   
PPAT        NM_002703     SEQ ID NO:21860  NP_002694     SEQ ID NO:22447  phosphoribosyl pyrophosphate amidotransferase proprotein [Homo sapiens]                           
PPP1R10*    NM_002714     SEQ ID NO:32803  NP_002705     SEQ ID NO:32859  protein phosphatase 1, regulatory subunit 10 [Homo sapiens]                                       
PRAC        NM_032391     SEQ ID NO:32804  NP_115767     SEQ ID NO:32860  small nuclear protein PRAC [Homo sapiens]                                                         
PRKD1*      NM_002742     SEQ ID NO:21870  NP_002733     SEQ ID NO:22457  protein kinase D1 [Homo sapiens]                                                                  
PRKD1*      NM_002742     SEQ ID NO:21870  NP_002733     SEQ ID NO:22457  protein kinase D1 [Homo sapiens]                                                                  
RANBP2*     NM_006267     SEQ ID NO:14350  NP_006258     SEQ ID NO:14764  RAN binding protein 2 [Homo sapiens]                                                              
RASEF*      NM_152573     SEQ ID NO:32805  NP_689786     SEQ ID NO:32861  RAS and EF hand domain containing [Homo sapiens]                                                  
SMPD2*      NM_003080     SEQ ID NO:32806  NP_003071     SEQ ID NO:32862  sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) [Homo sapiens]     
SNN         NM_003498     SEQ ID NO:32807  NP_003489     SEQ ID NO:32863  Stannin [Homo sapiens]                                                                            
SPON2*      NM_012445     SEQ ID NO:32218  NP_036577     SEQ ID NO:32232  spondin 2, extracellular matrix protein [Homo sapiens]                                            
SRP14*      NM_003134     SEQ ID NO:32808  NP_003125     SEQ ID NO:32864  signal recognition particle 14kDa (homologous Alu RNA binding protein) [Homo sapiens]             
STEAP1*     NM_012449     SEQ ID NO:21938  NP_036581     SEQ ID NO:22525  six transmembrane epithelial antigen of the prostate [Homo sapiens]                               
TIMELESS*   NM_003920     SEQ ID NO:32809  NP_003911     SEQ ID NO:32865  timeless homolog [Homo sapiens]                                                                   
TPP1*       NM_000391     SEQ ID NO:32810  NP_000382     SEQ ID NO:32866  tripeptidyl-peptidase I precursor [Homo sapiens]                                                  
TUFT1*      NM_020127     SEQ ID NO:32811  NP_064512     SEQ ID NO:32867  tuftelin 1 [Homo sapiens]                                                                         
VPS25*      NM_032353     SEQ ID NO:32812  NP_115729     SEQ ID NO:32868  vacuolar protein sorting 25 [Homo sapiens]                                                        
ZIM2*       NM_015363     SEQ ID NO:5887   NP_056178     SEQ ID NO:6721   zinc finger, imprinted 2 [Homo sapiens]                                                           


*Denotes predicted glycoprotein	
