Table 41B. Potential Biomarkers for Prostate Cancer - LNCaP Cell


Gene        Type      Signature          SIGSEQIDNO       Class  Count  Specif  HUPO  
AMACR       other     GATCTCAGGACCCCCCA  SEQ ID NO:32869  1      114    0.905   1     
AMACR*      other     GATCTCAGGACCCCCCA  SEQ ID NO:32869  1      114    0.905   0     
AR          other     GATCAAAAGATGAAAAG  SEQ ID NO:32870  6      47     1       0     
AR          other     GATCCTCATATGGCCCA  SEQ ID NO:32871  3      595    0.707   0     
AR          other     GATCCTCATATGGCCCA  SEQ ID NO:32871  3      595    0.707   0     
ARF4*       other     GATCTCTAATTCTGTCA  SEQ ID NO:32872  1      92     0.911   0     
BSG*        TM        GATCCTACGACAGGACC  SEQ ID NO:32873  3      71     0.67    0     
BSG*        TM        GATCCTACGACAGGACC  SEQ ID NO:32873  3      71     0.67    0     
BSG*        TM        GATCCTACGACAGGACC  SEQ ID NO:32873  3      71     0.67    0     
BSG*        TM        GATCCTACGACAGGACC  SEQ ID NO:32873  3      71     0.67    0     
C21orf34    other     GATCATAAAGAGTAAAG  SEQ ID NO:32874  6      64     0.928   0     
C21orf34    other     GATCATAAAGAGTAAAG  SEQ ID NO:32874  6      64     0.928   0     
C21orf34    other     GATCATAAAGAGTAAAG  SEQ ID NO:32874  6      64     0.928   0     
C6orf96*    other     GATCCCAGGTACTTGAG  SEQ ID NO:32875  5      58     0.784   2     
CCNB1       other     GATCCAATTGATGTATA  SEQ ID NO:32876  1      146    0.616   0     
CCT6A*      other     GATCCTGAGGAATACAG  SEQ ID NO:32877  2      983    0.996   0     
CCT6A*      other     GATCCTGAGGAATACAG  SEQ ID NO:32877  2      983    0.996   0     
CNNM2*      TM        GATCCCGATGACTGTAC  SEQ ID NO:32878  4      11     1       0     
CNNM2*      TM        GATCCCGATGACTGTAC  SEQ ID NO:32878  4      11     1       0     
CNNM2*      TM        GATCCCGATGACTGTAC  SEQ ID NO:32878  4      11     1       0     
CYCS        other     GATCCCCCCTGCCTACC  SEQ ID NO:19841  15     84     0.689   0     
DEPDC1*     other     GATCTCTACTGATTAAA  SEQ ID NO:32879  1      334    0.771   0     
DPP6*       TM        GATCAGGGACTACTGTT  SEQ ID NO:32880  14     73     0.912   0     
DPP6*       TM        GATCAGGGACTACTGTT  SEQ ID NO:32880  14     73     0.912   0     
DPP6*       TM        GATCAGGGACTACTGTT  SEQ ID NO:32880  14     73     0.912   0     
EPB41L1*    other     GATCTCAGTGGCTTCAT  SEQ ID NO:32881  22     8      1       0     
EPB41L1*    other     GATCTCAGTGGCTTCAT  SEQ ID NO:32881  22     8      1       0     
ETV1*       other     GATCTTTCAGATTTTGT  SEQ ID NO:32882  24     10     1       0     
FAM111B*    other     GATCATGTGCTTTGCAG  SEQ ID NO:31085  2      55     0.632   0     
FBN2*       secreted  GATCACGCCAGTGCATT  SEQ ID NO:32883  26     23     0.742   1     
FLJ20152*   TM        GATCTTTCATCTGGTTT  SEQ ID NO:32884  14     64     0.901   0     
FLJ20152*   TM        GATCTTTCATCTGGTTT  SEQ ID NO:32884  14     64     0.901   0     
FLJ39739*   other     GATCTTGCAAGACCGTC  SEQ ID NO:32885  1      109    0.634   0     
FLJ42117*   other     GATCAAATGTTTATTTT  SEQ ID NO:32886  4      17     0.85    0     
FOLH1*      TM        GATCCATTAGGGTTACC  SEQ ID NO:32887  1      997    0.572   1     
GLIPR1*     TM        GATCTGACTTTCTGGTT  SEQ ID NO:32888  13     16     1       0     
GNB1        other     GATCTGGCAAAGAGAAA  SEQ ID NO:32889  22     106    0.964   1     
GPR126*     TM        GATCAAACATCAATCAT  SEQ ID NO:32890  1      12     1       0     
GPR126*     TM        GATCAAACATCAATCAT  SEQ ID NO:32890  1      12     1       0     
GPR126*     TM        GATCAAACATCAATCAT  SEQ ID NO:32890  1      12     1       0     
GPR126*     TM        GATCAAACATCAATCAT  SEQ ID NO:32890  1      12     1       0     
GTF2H2      other     GATCAAAATCCTATTAG  SEQ ID NO:32891  1      151    0.665   0     
GULP1*      other     GATCAGGACCATTTGCC  SEQ ID NO:22871  23     49     0.845   0     
GULP1*      other     GATCAGTTATACTCTAA  SEQ ID NO:32892  3      141    0.75    0     
GULP1*      other     GATCTTCATAAAAACGC  SEQ ID NO:32893  12     87     0.725   0     
HGD*        other     GATCTTTGAATCTCCAG  SEQ ID NO:32894  24     9      1       0     
HRB2*       other     GATCTGACTTTCTGGTT  SEQ ID NO:32888  13     16     1       0     
HSPB6       other     GATCCTGACTGGCCTGG  SEQ ID NO:32895  24     16     1       1     
HYPK        other     GATCCAGAGTTCCAATC  SEQ ID NO:32896  2      15     1       0     
ITGA1*      TM        GATCTCAGTGGCTTCAT  SEQ ID NO:32881  22     8      1       0     
KIAA0101*   other     GATCACACAAATGATGA  SEQ ID NO:32897  1      71     0.582   0     
KIAA0101*   other     GATCACACAAATGATGA  SEQ ID NO:32897  1      71     0.582   0     
KIAA0586*   other     GATCAGAAGAATCAGAG  SEQ ID NO:32898  4      17     0.895   0     
KIAA1244*   other     GATCCATCATTTAAAAA  SEQ ID NO:32899  5      81     0.648   1     
LOC202451*  other     GATCCATCATTTAAAAA  SEQ ID NO:32899  5      81     0.648   0     
LOC202451*  other     GATCCATCATTTAAAAA  SEQ ID NO:32899  5      81     0.648   0     
LOC644379*  other     GATCATTATTTTCATCC  SEQ ID NO:32900  23     10     0.714   0     
LRRIQ1*     other     GATCCTATCTCATCTTT  SEQ ID NO:32901  22     5      1       0     
LSM11       other     GATCTCCACTGTAAACT  SEQ ID NO:32902  4      28     1       0     
LSM8*       other     GATCCAGATAGTCTTTT  SEQ ID NO:32903  24     14     1       0     
LUZP2*      secreted  GATCTGTGAGGAAAAAT  SEQ ID NO:32904  1      66     0.857   0     
MAGEA2*     other     GATCGGTGGAGAACCTC  SEQ ID NO:32905  1      37     1       0     
MAGEA2*     other     GATCGGTGGAGAACCTC  SEQ ID NO:32905  1      37     1       0     
MAGEA2*     other     GATCGGTGGAGAACCTC  SEQ ID NO:32905  1      37     1       0     
MAGEA2B*    other     GATCGGTGGAGAACCTC  SEQ ID NO:32905  1      37     1       0     
MARCH7*     other     GATCATTTTCTCAGAGA  SEQ ID NO:32906  5      5      1       2     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGA*        other     GATCTCTTTGAGAAATT  SEQ ID NO:32907  5      31     0.674   0     
MGC15523    TM        GATCACTTGAACCAAGA  SEQ ID NO:32908  6      37     0.881   0     
MGC15523    TM        GATCACTTGAACCAAGA  SEQ ID NO:32908  6      37     0.881   0     
MYO6*       other     GATCAAGGCACTAATGT  SEQ ID NO:32909  2      120    0.635   0     
MYO6*       other     GATCATGAAGTCTGACC  SEQ ID NO:32910  2      91     0.791   0     
MYO6*       other     GATCATTTTCGACTCAC  SEQ ID NO:32911  2      39     0.907   0     
NAT5        other     GATCCAAGTTAATGTTG  SEQ ID NO:32912  14     15     0.714   0     
NAT5        other     GATCCAAGTTAATGTTG  SEQ ID NO:32912  14     15     0.714   0     
NETO1*      secreted  GATCTGAGTAATAGTGT  SEQ ID NO:32913  2      33     0.733   0     
OR51E2*     TM        GATCGTGTCTTCATTTT  SEQ ID NO:32914  22     83     0.954   0     
OXA1L       TM        GATCCTGGACCACCCAG  SEQ ID NO:32915  15     20     0.8     0     
PCBP2*      other     GATCATATTAGTTATAA  SEQ ID NO:32916  4      18     1       0     
PCBP2*      other     GATCATATTAGTTATAA  SEQ ID NO:32916  4      18     1       0     
PCYT2*      other     GATCATCCAGTTTGCTT  SEQ ID NO:32917  1      233    0.79    0     
PDE4DIP*    other     GATCTTGCAAGACCGTC  SEQ ID NO:32885  1      109    0.634   0     
PDE4DIP*    other     GATCTTGCAAGACCGTC  SEQ ID NO:32885  1      109    0.634   0     
PDE4DIP*    other     GATCTTGCAAGACCGTC  SEQ ID NO:32885  1      109    0.634   0     
PDE4DIP*    other     GATCTTGCAAGACCGTC  SEQ ID NO:32885  1      109    0.634   0     
PDE4DIP*    other     GATCTTGCAAGACCGTC  SEQ ID NO:32885  1      109    0.634   0     
PDE8B*      other     GATCTACATAAAGTCAG  SEQ ID NO:32918  5      10     1       0     
PDE8B*      other     GATCTACATAAAGTCAG  SEQ ID NO:32918  5      10     1       0     
PDE8B*      other     GATCTACATAAAGTCAG  SEQ ID NO:32918  5      10     1       0     
PDE8B*      other     GATCTACATAAAGTCAG  SEQ ID NO:32918  5      10     1       0     
PDE8B*      other     GATCTACATAAAGTCAG  SEQ ID NO:32918  5      10     1       1     
PEG3*       other     GATCTTCCGTCCTTCTT  SEQ ID NO:32919  4      6      1       1     
PELO*       other     GATCTCAGTGGCTTCAT  SEQ ID NO:32881  22     8      1       2     
PKM2*       other     GATCCCGTTTCCACAAA  SEQ ID NO:23047  4      35     0.814   0     
PKM2*       other     GATCCCGTTTCCACAAA  SEQ ID NO:23047  4      35     0.814   8     
PKM2*       other     GATCCCGTTTCCACAAA  SEQ ID NO:23047  4      35     0.814   0     
POPDC3*     TM        GATCCTATCAAAACACA  SEQ ID NO:32920  15     10     1       1     
PPAT        other     GATCCTTATGGAAATCG  SEQ ID NO:32921  4      14     0.7     0     
PPP1R10*    other     GATCCAATGAGGCCCCC  SEQ ID NO:32922  2      13     0.867   0     
PRAC        other     GATCAAGGACCGGCCCA  SEQ ID NO:32923  1      355    0.648   0     
PRKD1*      anchored  GATCAATCCAAGTGCTA  SEQ ID NO:32924  1      30     0.732   1     
PRKD1*      anchored  GATCTAACAGATATTTA  SEQ ID NO:32925  24     106    0.65    1     
RANBP2*     other     GATCAAGAAAATTCACC  SEQ ID NO:32926  5      41     0.612   13    
RASEF*      other     GATCCATTACCAATCTA  SEQ ID NO:32927  3      182    0.591   0     
SMPD2*      TM        GATCAGCAACCTTTTAT  SEQ ID NO:32928  3      33     0.702   0     
SNN         TM        GATCTTCTTGATTAAGA  SEQ ID NO:32929  1      55     0.733   0     
SPON2*      secreted  GATCTCTCTGCGTTTGA  SEQ ID NO:32254  1      3062   0.545   0     
SRP14*      other     GATCAACACTGTGGTGA  SEQ ID NO:32930  1      291    0.967   1     
STEAP1*     TM        GATCCTACAGATACAAG  SEQ ID NO:23168  1      451    0.719   0     
TIMELESS*   other     GATCAGGAGAAAAAAGA  SEQ ID NO:32931  4      20     1       0     
TPP1*       anchored  GATCAGCTTGAGCAAGA  SEQ ID NO:32932  24     15     0.75    0     
TUFT1*      other     GATCCAATGGTAGAAGG  SEQ ID NO:32933  24     11     1       0     
VPS25*      other     GATCCAGTCTTTGGGGG  SEQ ID NO:32934  14     5      1       0     
ZIM2*       other     GATCTTCCGTCCTTCTT  SEQ ID NO:32919  4      6      1       1     

*Denotes predicted glycoprotein	