                         SEQUENCE LISTING

<110>  University of Georgia Research Foundation, Inc.
       Sellers, H.S.
 
<120>  REOVIRUS COMPOSITIONS AND METHODS OF USE

<130>  UGRF-1-30343

<150>  US 60/862,958
<151>  2006-10-25

<160>  31    

<170>  PatentIn version 3.2

<210>  1
<211>  981
<212>  DNA
<213>  Avian orthoreovirus isolate chicken GA 40973/2005 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(981)

<400>  1
atg gaa ggc tta act cag tca cag cga aga gag gtc gtg ggg ctg ata       48
Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg agc gtg act ata aat cct ggc gat ttg acg gaa       96
Leu Ser Leu Thr Ser Ser Val Thr Ile Asn Pro Gly Asp Leu Thr Glu         
            20                  25                  30                  

ctg cgt gag cgc gtc tcg gcg tta gac tcg gcc aat gcg tcg ttg acc      144
Leu Arg Glu Arg Val Ser Ala Leu Asp Ser Ala Asn Ala Ser Leu Thr         
        35                  40                  45                      

gaa acc gta aaa ggc gtg tta gat cag ttg gta gat ttg gta cag aag      192
Glu Thr Val Lys Gly Val Leu Asp Gln Leu Val Asp Leu Val Gln Lys         
    50                  55                  60                          

ttg ggc aat gcg gcg ggt gct ata gtt gac cta cga gga gag cta aac      240
Leu Gly Asn Ala Ala Gly Ala Ile Val Asp Leu Arg Gly Glu Leu Asn         
65                  70                  75                  80          

tca tta act acc aga gtc caa act atc caa tcc tct ttg gga tca ctc      288
Ser Leu Thr Thr Arg Val Gln Thr Ile Gln Ser Ser Leu Gly Ser Leu         
                85                  90                  95              

acg gac agt ata tcg gat ctt tct ggc caa gtg act act aac acc tct      336
Thr Asp Ser Ile Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Thr Ser         
            100                 105                 110                 

tcg ctc acg aat ctg ggg agt atg atg gct ggt ctc aca gtc gat gtg      384
Ser Leu Thr Asn Leu Gly Ser Met Met Ala Gly Leu Thr Val Asp Val         
        115                 120                 125                     

act aat ctt aaa cgc gac gta tcg aat cag ggt ctt caa att acg agt      432
Thr Asn Leu Lys Arg Asp Val Ser Asn Gln Gly Leu Gln Ile Thr Ser         
    130                 135                 140                         

atc gag cag cgt gta act agt ttg gaa tct ggt gct gga tct att ccc      480
Ile Glu Gln Arg Val Thr Ser Leu Glu Ser Gly Ala Gly Ser Ile Pro         
145                 150                 155                 160         

aca ttt gct gct ccc ctt aaa tta gat agc ggg att gta tca ctc gac      528
Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Ile Val Ser Leu Asp         
                165                 170                 175             

ctg gat cct tac ttt tgt tct gtg aac cat aat ctc acg tcg tat tcc      576
Leu Asp Pro Tyr Phe Cys Ser Val Asn His Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gca agc gct ctg cta atg aat ttt cag tgg ctt gtt cga ggt gag gga      624
Ala Ser Ala Leu Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly         
        195                 200                 205                     

gga tcg tct gat tca ttc gat atg aat gtg aca gct cat agt cac ggc      672
Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly         
    210                 215                 220                         

cag agg aca gat ttt atg atg tct act act cag tcg tta act gtt act      720
Gln Arg Thr Asp Phe Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr         
225                 230                 235                 240         

gga aat tct gtc act cta gtc ttt gat ctt aac gcg ctt att tct ccc      768
Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro         
                245                 250                 255             

ccc tct gac tat tct cgt ttg ata cca tgt cat ggt ttt caa caa gcg      816
Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

acg ttc cca gtg gac ctt tcg ttt aag cga gac gac gtc atg cat tca      864
Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Met His Ser         
        275                 280                 285                     

tat cag gtg tat ggt tct tac aca act ccc cgc att ttc aag ata aca      912
Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Ile Phe Lys Ile Thr         
    290                 295                 300                         

ttc tcc cct ggc aat cca gtg cct gcg gtc ata cgt ttc ata acc gtg      960
Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gat act taa                                          981
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  2
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken GA 40973/2005 segment 1 encoding the minor outer capsid protein sigma C

<400>  2

Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Val Thr Ile Asn Pro Gly Asp Leu Thr Glu 
            20                  25                  30          


Leu Arg Glu Arg Val Ser Ala Leu Asp Ser Ala Asn Ala Ser Leu Thr 
        35                  40                  45              


Glu Thr Val Lys Gly Val Leu Asp Gln Leu Val Asp Leu Val Gln Lys 
    50                  55                  60                  


Leu Gly Asn Ala Ala Gly Ala Ile Val Asp Leu Arg Gly Glu Leu Asn 
65                  70                  75                  80  


Ser Leu Thr Thr Arg Val Gln Thr Ile Gln Ser Ser Leu Gly Ser Leu 
                85                  90                  95      


Thr Asp Ser Ile Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Thr Ser 
            100                 105                 110         


Ser Leu Thr Asn Leu Gly Ser Met Met Ala Gly Leu Thr Val Asp Val 
        115                 120                 125             


Thr Asn Leu Lys Arg Asp Val Ser Asn Gln Gly Leu Gln Ile Thr Ser 
    130                 135                 140                 


Ile Glu Gln Arg Val Thr Ser Leu Glu Ser Gly Ala Gly Ser Ile Pro 
145                 150                 155                 160 


Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Ile Val Ser Leu Asp 
                165                 170                 175     


Leu Asp Pro Tyr Phe Cys Ser Val Asn His Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Leu Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly 
    210                 215                 220                 


Gln Arg Thr Asp Phe Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro 
                245                 250                 255     


Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Met His Ser 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Ile Phe Lys Ile Thr 
    290                 295                 300                 


Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  3
<211>  978
<212>  DNA
<213>  Avian orthoreovirus isolate chicken AL/40963 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(978)

<220>
<221>  misc_feature
<222>  (978)..(978)
<223>  N = a, c, g or t

<400>  3
atg gcc gga ctc act cca tca cag cga aga gaa gtc gtc ggg cta ata       48
Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg aac acg agt ata ggt cct gga gat ttg aca ccg       96
Leu Ser Leu Thr Ser Asn Thr Ser Ile Gly Pro Gly Asp Leu Thr Pro         
            20                  25                  30                  

atc tac gat cgt ctc tcg gcc gtt gag aca gct tgc gcc act tta agt      144
Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ala Cys Ala Thr Leu Ser         
        35                  40                  45                      

gac tct gtg ggc caa tta gct tca acg aca tct gct tta tcc act cgt      192
Asp Ser Val Gly Gln Leu Ala Ser Thr Thr Ser Ala Leu Ser Thr Arg         
    50                  55                  60                          

ttg gat aac ttg gtg agt gtg tca caa gat atg gct aat gac ctg agg      240
Leu Asp Asn Leu Val Ser Val Ser Gln Asp Met Ala Asn Asp Leu Arg         
65                  70                  75                  80          

gat gtt caa agt cgc gtg tct gca ctt caa aca tcg ata gat agt atg      288
Asp Val Gln Ser Arg Val Ser Ala Leu Gln Thr Ser Ile Asp Ser Met         
                85                  90                  95              

tcc agt gac att tcc acc tta tca caa tcg ctg tct aat cac gat tcc      336
Ser Ser Asp Ile Ser Thr Leu Ser Gln Ser Leu Ser Asn His Asp Ser         
            100                 105                 110                 

cag att tcc acg ctt tcc tct tct gtc agc act gta gca act aac gtg      384
Gln Ile Ser Thr Leu Ser Ser Ser Val Ser Thr Val Ala Thr Asn Val         
        115                 120                 125                     

tcc aac ctt caa cgt gac gtg gct gca tct gca ctc aac att tct gat      432
Ser Asn Leu Gln Arg Asp Val Ala Ala Ser Ala Leu Asn Ile Ser Asp         
    130                 135                 140                         

ctt cag cga cgt gtt gct gct ctg gaa tcg agt ccc ggt tca tcc ctt      480
Leu Gln Arg Arg Val Ala Ala Leu Glu Ser Ser Pro Gly Ser Ser Leu         
145                 150                 155                 160         

aca ttt ctt gct ccc ctg cgg gct gat ggt ggc tcc gtc tca tta gat      528
Thr Phe Leu Ala Pro Leu Arg Ala Asp Gly Gly Ser Val Ser Leu Asp         
                165                 170                 175             

atg gat ccg tat ttt tgc tca gaa agg gcg aac tta acg tcc tac tcg      576
Met Asp Pro Tyr Phe Cys Ser Glu Arg Ala Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gcg agt gcg cag ctg ctg cag ttt cag tgg ttc gtc agg agt gag gga      624
Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Phe Val Arg Ser Glu Gly         
        195                 200                 205                     

ggt tcc tca gac tcg att aac atg agc gtg gtg gcc cat tgc cac ggt      672
Gly Ser Ser Asp Ser Ile Asn Met Ser Val Val Ala His Cys His Gly         
    210                 215                 220                         

cgt cgt acg gac tat ctg atg tcc tct cat gac tca ctc acc gtc act      720
Arg Arg Thr Asp Tyr Leu Met Ser Ser His Asp Ser Leu Thr Val Thr         
225                 230                 235                 240         

ggc aac tca gtg tct tta gtg ttc aac ttg gat tac att act acg tct      768
Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Thr Ser         
                245                 250                 255             

ggt gtg gat tat gct cgt ctg att ccg tgt cat ggt ttt cag caa gcc      816
Gly Val Asp Tyr Ala Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

act ttt cct gtt gac atc tct ttc acg aag aat gat act aca cac acg      864
Thr Phe Pro Val Asp Ile Ser Phe Thr Lys Asn Asp Thr Thr His Thr         
        275                 280                 285                     

tac caa gtc tat ggc gca ttt aat ggc cct cgc gtc ttt aag gtg acc      912
Tyr Gln Val Tyr Gly Ala Phe Asn Gly Pro Arg Val Phe Lys Val Thr         
    290                 295                 300                         

ttc tct ccg ggt ggg act agc acg aca aac ata cgc ttt ctg acc gtg      960
Phe Ser Pro Gly Gly Thr Ser Thr Thr Asn Ile Arg Phe Leu Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gac acn                                              978
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  4
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken AL/40963 segment 1 encoding the minor outer capsid protein sigma C

<400>  4

Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Asn Thr Ser Ile Gly Pro Gly Asp Leu Thr Pro 
            20                  25                  30          


Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ala Cys Ala Thr Leu Ser 
        35                  40                  45              


Asp Ser Val Gly Gln Leu Ala Ser Thr Thr Ser Ala Leu Ser Thr Arg 
    50                  55                  60                  


Leu Asp Asn Leu Val Ser Val Ser Gln Asp Met Ala Asn Asp Leu Arg 
65                  70                  75                  80  


Asp Val Gln Ser Arg Val Ser Ala Leu Gln Thr Ser Ile Asp Ser Met 
                85                  90                  95      


Ser Ser Asp Ile Ser Thr Leu Ser Gln Ser Leu Ser Asn His Asp Ser 
            100                 105                 110         


Gln Ile Ser Thr Leu Ser Ser Ser Val Ser Thr Val Ala Thr Asn Val 
        115                 120                 125             


Ser Asn Leu Gln Arg Asp Val Ala Ala Ser Ala Leu Asn Ile Ser Asp 
    130                 135                 140                 


Leu Gln Arg Arg Val Ala Ala Leu Glu Ser Ser Pro Gly Ser Ser Leu 
145                 150                 155                 160 


Thr Phe Leu Ala Pro Leu Arg Ala Asp Gly Gly Ser Val Ser Leu Asp 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Glu Arg Ala Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Phe Val Arg Ser Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Ile Asn Met Ser Val Val Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Leu Met Ser Ser His Asp Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Thr Ser 
                245                 250                 255     


Gly Val Asp Tyr Ala Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Ile Ser Phe Thr Lys Asn Asp Thr Thr His Thr 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Asn Gly Pro Arg Val Phe Lys Val Thr 
    290                 295                 300                 


Phe Ser Pro Gly Gly Thr Ser Thr Thr Asn Ile Arg Phe Leu Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  5
<211>  978
<212>  DNA
<213>  Avian orthoreovirus isolate chicken GA/41560 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(978)

<400>  5
atg gcc gga tta act ccc tca cag cga aga gaa gtc gtg gga ttg ata       48
Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tcc ttg act tcg agc gcg aat aca aat tgt gga gat ttg acg ccc       96
Leu Ser Leu Thr Ser Ser Ala Asn Thr Asn Cys Gly Asp Leu Thr Pro         
            20                  25                  30                  

gta tat gac cgt ttg ctt agt ctg gaa tcc act att acg tca ttg aat      144
Val Tyr Asp Arg Leu Leu Ser Leu Glu Ser Thr Ile Thr Ser Leu Asn         
        35                  40                  45                      

ggc tct gtt agc gac ttg tcg cgg aag gta tcg gat ctg gaa tct gat      192
Gly Ser Val Ser Asp Leu Ser Arg Lys Val Ser Asp Leu Glu Ser Asp         
    50                  55                  60                          

ttg caa gac gtc att tca tct tta ggt cag gct aat tca acg ttg acc      240
Leu Gln Asp Val Ile Ser Ser Leu Gly Gln Ala Asn Ser Thr Leu Thr         
65                  70                  75                  80          

gag tta tct aaa gaa cta cgt cag tta agt ggc tct gtt gac act ctc      288
Glu Leu Ser Lys Glu Leu Arg Gln Leu Ser Gly Ser Val Asp Thr Leu         
                85                  90                  95              

gtc acg tct gtt tcg gat cta tcg acc act gta tcc ggg cat cag aac      336
Val Thr Ser Val Ser Asp Leu Ser Thr Thr Val Ser Gly His Gln Asn         
            100                 105                 110                 

gcg ata gcc gct ata caa act tcc gtt cac gct aat acg act gac att      384
Ala Ile Ala Ala Ile Gln Thr Ser Val His Ala Asn Thr Thr Asp Ile         
        115                 120                 125                     

agt aac ctg aaa agt agc ata tcg act atc ggc tta aat atc act gac      432
Ser Asn Leu Lys Ser Ser Ile Ser Thr Ile Gly Leu Asn Ile Thr Asp         
    130                 135                 140                         

cta gag caa cgt gtg gga aac atc gaa tca ggg tcg ggt cct act ttg      480
Leu Glu Gln Arg Val Gly Asn Ile Glu Ser Gly Ser Gly Pro Thr Leu         
145                 150                 155                 160         

aag ttt atg tca cct ctg agc ttg tcc caa ggc gta gcg tca ctg att      528
Lys Phe Met Ser Pro Leu Ser Leu Ser Gln Gly Val Ala Ser Leu Ile         
                165                 170                 175             

atg gat cct tac ttc tgt tca gac aat aag gcg cta acc tca tac tct      576
Met Asp Pro Tyr Phe Cys Ser Asp Asn Lys Ala Leu Thr Ser Tyr Ser         
            180                 185                 190                 

aca gac gct cag ctg atg cag ttc cag tgg ctg gct cga ggt gag gat      624
Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Asp         
        195                 200                 205                     

ggt tca tcg agc tct gtt gag atg ctt gtt aat gcg cac tgt cat ggg      672
Gly Ser Ser Ser Ser Val Glu Met Leu Val Asn Ala His Cys His Gly         
    210                 215                 220                         

cgt cgc act gac tat atg atg tcc act aca gag aat ttc act gtc acg      720
Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Asn Phe Thr Val Thr         
225                 230                 235                 240         

ggc aac tcc gta tcg ttg gtt ttc agt ctg gac tat att act aaa ccg      768
Gly Asn Ser Val Ser Leu Val Phe Ser Leu Asp Tyr Ile Thr Lys Pro         
                245                 250                 255             

cct tct gac ata tca cgt tta gta cca cgt gtc gga ttc cag gct gct      816
Pro Ser Asp Ile Ser Arg Leu Val Pro Arg Val Gly Phe Gln Ala Ala         
            260                 265                 270                 

tcc ttt cct gtg gac gtc tct ttc act cgt gac gca act ccg cat gct      864
Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Ala Thr Pro His Ala         
        275                 280                 285                     

tac cag gta tac ggc gct ttt tct agc cct cgc gtc ttc aag atc acg      912
Tyr Gln Val Tyr Gly Ala Phe Ser Ser Pro Arg Val Phe Lys Ile Thr         
    290                 295                 300                         

ttc ctc aca ggt ggc act ggg act gcg aat ctc cgt ttc ttg acc gta      960
Phe Leu Thr Gly Gly Thr Gly Thr Ala Asn Leu Arg Phe Leu Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gac acc                                              978
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  6
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken GA/41560 segment 1 encoding the minor outer capsid protein sigma C

<400>  6

Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Ala Asn Thr Asn Cys Gly Asp Leu Thr Pro 
            20                  25                  30          


Val Tyr Asp Arg Leu Leu Ser Leu Glu Ser Thr Ile Thr Ser Leu Asn 
        35                  40                  45              


Gly Ser Val Ser Asp Leu Ser Arg Lys Val Ser Asp Leu Glu Ser Asp 
    50                  55                  60                  


Leu Gln Asp Val Ile Ser Ser Leu Gly Gln Ala Asn Ser Thr Leu Thr 
65                  70                  75                  80  


Glu Leu Ser Lys Glu Leu Arg Gln Leu Ser Gly Ser Val Asp Thr Leu 
                85                  90                  95      


Val Thr Ser Val Ser Asp Leu Ser Thr Thr Val Ser Gly His Gln Asn 
            100                 105                 110         


Ala Ile Ala Ala Ile Gln Thr Ser Val His Ala Asn Thr Thr Asp Ile 
        115                 120                 125             


Ser Asn Leu Lys Ser Ser Ile Ser Thr Ile Gly Leu Asn Ile Thr Asp 
    130                 135                 140                 


Leu Glu Gln Arg Val Gly Asn Ile Glu Ser Gly Ser Gly Pro Thr Leu 
145                 150                 155                 160 


Lys Phe Met Ser Pro Leu Ser Leu Ser Gln Gly Val Ala Ser Leu Ile 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Asp Asn Lys Ala Leu Thr Ser Tyr Ser 
            180                 185                 190         


Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Asp 
        195                 200                 205             


Gly Ser Ser Ser Ser Val Glu Met Leu Val Asn Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Asn Phe Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Ser Leu Asp Tyr Ile Thr Lys Pro 
                245                 250                 255     


Pro Ser Asp Ile Ser Arg Leu Val Pro Arg Val Gly Phe Gln Ala Ala 
            260                 265                 270         


Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Ala Thr Pro His Ala 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Ser Ser Pro Arg Val Phe Lys Ile Thr 
    290                 295                 300                 


Phe Leu Thr Gly Gly Thr Gly Thr Ala Asn Leu Arg Phe Leu Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  7
<211>  978
<212>  DNA
<213>  Avian orthoreovirus isolate chicken GA/41565 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(978)

<400>  7
atg gcc gga ctc act cca tca cag cga aga gaa gtc gtc ggg ctg ata       48
Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg aac acg agt ata agt cct gga gat ttg aca ccg       96
Leu Ser Leu Thr Ser Asn Thr Ser Ile Ser Pro Gly Asp Leu Thr Pro         
            20                  25                  30                  

atc tac gat cgt ctc tcg gcc gtt gag aca gct tat tct act tta agc      144
Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ala Tyr Ser Thr Leu Ser         
        35                  40                  45                      

gac tct gtg ggt caa ttg gct tca acg aca tct gct tta tct act cgt      192
Asp Ser Val Gly Gln Leu Ala Ser Thr Thr Ser Ala Leu Ser Thr Arg         
    50                  55                  60                          

ctg gat gac ttg gtg agt atg tca caa gat ata gta aat gac ttg agg      240
Leu Asp Asp Leu Val Ser Met Ser Gln Asp Ile Val Asn Asp Leu Arg         
65                  70                  75                  80          

gat att caa agt cgt gta tct gca ttt caa ata tcg ata gat agt ctg      288
Asp Ile Gln Ser Arg Val Ser Ala Phe Gln Ile Ser Ile Asp Ser Leu         
                85                  90                  95              

tcc agt gac att tcc acc cta tca cag tcg ctg tct aat cat gat tcc      336
Ser Ser Asp Ile Ser Thr Leu Ser Gln Ser Leu Ser Asn His Asp Ser         
            100                 105                 110                 

cag att tcc acg ctt tcc tct tct gtc ggc acg cta tcc act gac atg      384
Gln Ile Ser Thr Leu Ser Ser Ser Val Gly Thr Leu Ser Thr Asp Met         
        115                 120                 125                     

tcc aac ctc caa cgc gac gta act gca tct gca ctc aac att tct gat      432
Ser Asn Leu Gln Arg Asp Val Thr Ala Ser Ala Leu Asn Ile Ser Asp         
    130                 135                 140                         

ctt cag cga cgt gtt gct gct ctg gaa tcg agt tcc ggt tca ccc ctt      480
Leu Gln Arg Arg Val Ala Ala Leu Glu Ser Ser Ser Gly Ser Pro Leu         
145                 150                 155                 160         

aca ttt ctt gct ccc ctg cga gct gat ggt ggc tcc gtc tcg tta gat      528
Thr Phe Leu Ala Pro Leu Arg Ala Asp Gly Gly Ser Val Ser Leu Asp         
                165                 170                 175             

atg gat ccg tac ttt tgc tcg gaa agg gcg aac tta acg tct tac tca      576
Met Asp Pro Tyr Phe Cys Ser Glu Arg Ala Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gcg agt gcg cag ttg ctg cag ttt cag tgg ttt gtc agg agt gag gga      624
Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Phe Val Arg Ser Glu Gly         
        195                 200                 205                     

ggt tcc tca gac tca atc gac atg agc gtg gtg gct cac tgc cac ggc      672
Gly Ser Ser Asp Ser Ile Asp Met Ser Val Val Ala His Cys His Gly         
    210                 215                 220                         

cgt cgc acg gat tat ctg atg tct tcc cat gac tca ctc acc gtc act      720
Arg Arg Thr Asp Tyr Leu Met Ser Ser His Asp Ser Leu Thr Val Thr         
225                 230                 235                 240         

ggc aac tca gtg tct cta gtg ttc aac ctg gat cac atc acc acg tct      768
Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp His Ile Thr Thr Ser         
                245                 250                 255             

ggt gtg gat tat gct cgt ctg att ccg tgt cat ggt ttt caa caa gcc      816
Gly Val Asp Tyr Ala Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

act ttt cct gtt gac atc tct ttc acg aaa aat gac act aca cac acg      864
Thr Phe Pro Val Asp Ile Ser Phe Thr Lys Asn Asp Thr Thr His Thr         
        275                 280                 285                     

tac caa gtc tat ggc gcg ttt gat ggc cct cgc gtc ttt aag gtg acc      912
Tyr Gln Val Tyr Gly Ala Phe Asp Gly Pro Arg Val Phe Lys Val Thr         
    290                 295                 300                         

ttc tct ccg ggt ggg acc agc acg acg agc gta cgt ttt ctg acc gtg      960
Phe Ser Pro Gly Gly Thr Ser Thr Thr Ser Val Arg Phe Leu Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gac acc                                              978
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  8
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken GA/41565 segment 1 encoding the minor outer capsid protein sigma C

<400>  8

Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Asn Thr Ser Ile Ser Pro Gly Asp Leu Thr Pro 
            20                  25                  30          


Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ala Tyr Ser Thr Leu Ser 
        35                  40                  45              


Asp Ser Val Gly Gln Leu Ala Ser Thr Thr Ser Ala Leu Ser Thr Arg 
    50                  55                  60                  


Leu Asp Asp Leu Val Ser Met Ser Gln Asp Ile Val Asn Asp Leu Arg 
65                  70                  75                  80  


Asp Ile Gln Ser Arg Val Ser Ala Phe Gln Ile Ser Ile Asp Ser Leu 
                85                  90                  95      


Ser Ser Asp Ile Ser Thr Leu Ser Gln Ser Leu Ser Asn His Asp Ser 
            100                 105                 110         


Gln Ile Ser Thr Leu Ser Ser Ser Val Gly Thr Leu Ser Thr Asp Met 
        115                 120                 125             


Ser Asn Leu Gln Arg Asp Val Thr Ala Ser Ala Leu Asn Ile Ser Asp 
    130                 135                 140                 


Leu Gln Arg Arg Val Ala Ala Leu Glu Ser Ser Ser Gly Ser Pro Leu 
145                 150                 155                 160 


Thr Phe Leu Ala Pro Leu Arg Ala Asp Gly Gly Ser Val Ser Leu Asp 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Glu Arg Ala Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Phe Val Arg Ser Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Ile Asp Met Ser Val Val Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Leu Met Ser Ser His Asp Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp His Ile Thr Thr Ser 
                245                 250                 255     


Gly Val Asp Tyr Ala Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Ile Ser Phe Thr Lys Asn Asp Thr Thr His Thr 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Asp Gly Pro Arg Val Phe Lys Val Thr 
    290                 295                 300                 


Phe Ser Pro Gly Gly Thr Ser Thr Thr Ser Val Arg Phe Leu Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  9
<211>  981
<212>  DNA
<213>  Avian orthoreovirus isolate chicken MS 42563-1/2005 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(981)

<220>
<221>  misc_feature
<222>  (831)..(831)
<223>  y = c or t

<400>  9
atg gcc gga tta act ccc tcc cag cga aga gaa gtc gtg gga ttg ata       48
Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tcc ttg act tcg agc gtg aat aca aac tgt gga gat ttg acg cct       96
Leu Ser Leu Thr Ser Ser Val Asn Thr Asn Cys Gly Asp Leu Thr Pro         
            20                  25                  30                  

gta tat gac cgt ctg ctt agt ctg gaa tcc gct gtt gcg tcg ttg aat      144
Val Tyr Asp Arg Leu Leu Ser Leu Glu Ser Ala Val Ala Ser Leu Asn         
        35                  40                  45                      

aac tct gta aat ggc ttg ttg cag aag gta tca gat ttc gag tct gat      192
Asn Ser Val Asn Gly Leu Leu Gln Lys Val Ser Asp Phe Glu Ser Asp         
    50                  55                  60                          

ttg caa gac gtc act tca tcc cta ggc cag gcc aat tcg atg tta acc      240
Leu Gln Asp Val Thr Ser Ser Leu Gly Gln Ala Asn Ser Met Leu Thr         
65                  70                  75                  80          

gag cta tct aag gaa ctg cgt cag ttg agc agc tct gtt gac aat ctc      288
Glu Leu Ser Lys Glu Leu Arg Gln Leu Ser Ser Ser Val Asp Asn Leu         
                85                  90                  95              

gtc acg tcc gtt tct gat cta tcg acc gct gta tcc ggg cac cag aac      336
Val Thr Ser Val Ser Asp Leu Ser Thr Ala Val Ser Gly His Gln Asn         
            100                 105                 110                 

gcc ata gcc gat ata caa gct tcc gtt cac gcc aat gca act gat att      384
Ala Ile Ala Asp Ile Gln Ala Ser Val His Ala Asn Ala Thr Asp Ile         
        115                 120                 125                     

aac aac ctg aaa agc agt gtc tct act att agc tta aat atc act gat      432
Asn Asn Leu Lys Ser Ser Val Ser Thr Ile Ser Leu Asn Ile Thr Asp         
    130                 135                 140                         

ctc gag caa cgc gtg gca aac atc gag tca ggg tca gac tct aat tta      480
Leu Glu Gln Arg Val Ala Asn Ile Glu Ser Gly Ser Asp Ser Asn Leu         
145                 150                 155                 160         

agg ttt gtg tca cct ctg aac ttg tcc caa ggc gtg gtg tca ttg atc      528
Arg Phe Val Ser Pro Leu Asn Leu Ser Gln Gly Val Val Ser Leu Ile         
                165                 170                 175             

atg gat cct tac ttc tgt tct gac aat aag gca cta acc tca tat tct      576
Met Asp Pro Tyr Phe Cys Ser Asp Asn Lys Ala Leu Thr Ser Tyr Ser         
            180                 185                 190                 

acg gac gcg cag ctg atg cag ttt cag tgg ctg gct aga ggt gaa gat      624
Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Asp         
        195                 200                 205                     

ggg tca tcg agc tct gtt gat atg ctc gtt aac gca cac tgt cat ggg      672
Gly Ser Ser Ser Ser Val Asp Met Leu Val Asn Ala His Cys His Gly         
    210                 215                 220                         

cgt cgc act gac tat atg atg tcc act aca gag agt ttt act gtc acg      720
Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Ser Phe Thr Val Thr         
225                 230                 235                 240         

ggc aat tct gta tca ttg gtc ttc aat ctg gat tat atc acc aag ccg      768
Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Lys Pro         
                245                 250                 255             

ccc tct gac atg tcg cgg cta gta ccc cgt gct gga ttc cag gct gct      816
Pro Ser Asp Met Ser Arg Leu Val Pro Arg Ala Gly Phe Gln Ala Ala         
            260                 265                 270                 

tcg ttt ccc gtg gay gtc tcc ttc act cgt gac acg aca ccg cat gca      864
Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Thr Thr Pro His Ala         
        275                 280                 285                     

tac cag gtg tat ggt gct ttc tct agc cct cgc att ttt aag atc acg      912
Tyr Gln Val Tyr Gly Ala Phe Ser Ser Pro Arg Ile Phe Lys Ile Thr         
    290                 295                 300                         

ttc ctc aca ggt ggt act gga act gcg aat ctc cgt ttc ttg acc gtg      960
Phe Leu Thr Gly Gly Thr Gly Thr Ala Asn Leu Arg Phe Leu Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gac act taa                                          981
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  10
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken MS 42563-1/2005 segment 1 encoding the minor outer capsid protein sigma C

<400>  10

Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Val Asn Thr Asn Cys Gly Asp Leu Thr Pro 
            20                  25                  30          


Val Tyr Asp Arg Leu Leu Ser Leu Glu Ser Ala Val Ala Ser Leu Asn 
        35                  40                  45              


Asn Ser Val Asn Gly Leu Leu Gln Lys Val Ser Asp Phe Glu Ser Asp 
    50                  55                  60                  


Leu Gln Asp Val Thr Ser Ser Leu Gly Gln Ala Asn Ser Met Leu Thr 
65                  70                  75                  80  


Glu Leu Ser Lys Glu Leu Arg Gln Leu Ser Ser Ser Val Asp Asn Leu 
                85                  90                  95      


Val Thr Ser Val Ser Asp Leu Ser Thr Ala Val Ser Gly His Gln Asn 
            100                 105                 110         


Ala Ile Ala Asp Ile Gln Ala Ser Val His Ala Asn Ala Thr Asp Ile 
        115                 120                 125             


Asn Asn Leu Lys Ser Ser Val Ser Thr Ile Ser Leu Asn Ile Thr Asp 
    130                 135                 140                 


Leu Glu Gln Arg Val Ala Asn Ile Glu Ser Gly Ser Asp Ser Asn Leu 
145                 150                 155                 160 


Arg Phe Val Ser Pro Leu Asn Leu Ser Gln Gly Val Val Ser Leu Ile 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Asp Asn Lys Ala Leu Thr Ser Tyr Ser 
            180                 185                 190         


Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Asp 
        195                 200                 205             


Gly Ser Ser Ser Ser Val Asp Met Leu Val Asn Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Ser Phe Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Lys Pro 
                245                 250                 255     


Pro Ser Asp Met Ser Arg Leu Val Pro Arg Ala Gly Phe Gln Ala Ala 
            260                 265                 270         


Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Thr Thr Pro His Ala 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Ser Ser Pro Arg Ile Phe Lys Ile Thr 
    290                 295                 300                 


Phe Leu Thr Gly Gly Thr Gly Thr Ala Asn Leu Arg Phe Leu Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  11
<211>  981
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 42563-4/2005 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(981)

<400>  11
atg gcc gga ctc act cca tta cag cga aga gaa gtc gtc gga ctg ata       48
Met Ala Gly Leu Thr Pro Leu Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg agc acg agt ata agt cct gga gat ttg aca cca       96
Leu Ser Leu Thr Ser Ser Thr Ser Ile Ser Pro Gly Asp Leu Thr Pro         
            20                  25                  30                  

ata tat gat cgg ctg tcc gcc gtt gag acg atc tgc gac act cta agt      144
Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ile Cys Asp Thr Leu Ser         
        35                  40                  45                      

ggc tcc gtg ggc cag ttg acg act atg atg tct aat tta tct gct cgt      192
Gly Ser Val Gly Gln Leu Thr Thr Met Met Ser Asn Leu Ser Ala Arg         
    50                  55                  60                          

ctg gat gat tta acg att gtc tcc cga gat atg gcc act gat ttg aga      240
Leu Asp Asp Leu Thr Ile Val Ser Arg Asp Met Ala Thr Asp Leu Arg         
65                  70                  75                  80          

aac gtc caa ggt agt gtg tct gcg ctt cga acg tca tta gat cat ctg      288
Asn Val Gln Gly Ser Val Ser Ala Leu Arg Thr Ser Leu Asp His Leu         
                85                  90                  95              

tcc ggt gat gtt tcc gct tta tct caa tca tta tcc gcc cat gat tca      336
Ser Gly Asp Val Ser Ala Leu Ser Gln Ser Leu Ser Ala His Asp Ser         
            100                 105                 110                 

cag ctc tca aca ctc tcc gtc tct gtt agc gcc ctt tcg act gac gtg      384
Gln Leu Ser Thr Leu Ser Val Ser Val Ser Ala Leu Ser Thr Asp Val         
        115                 120                 125                     

tct aac ctc aaa cgc gat gtg gca tca tct gcg ctc aat atc tct gac      432
Ser Asn Leu Lys Arg Asp Val Ala Ser Ser Ala Leu Asn Ile Ser Asp         
    130                 135                 140                         

att cag cgg cgt gtc gcc gct ttg gaa tct ggt tct ggc gcg gtc cta      480
Ile Gln Arg Arg Val Ala Ala Leu Glu Ser Gly Ser Gly Ala Val Leu         
145                 150                 155                 160         

aca ttt cgt gct ccc ctt cgg ctc gat ggc gac tcc gtc tca tta gat      528
Thr Phe Arg Ala Pro Leu Arg Leu Asp Gly Asp Ser Val Ser Leu Asp         
                165                 170                 175             

atg gat cct tac ttt tgc tcg gaa agg gcg aac tta acg tca tac tcg      576
Met Asp Pro Tyr Phe Cys Ser Glu Arg Ala Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gcg agc gcg cag ctg ttg cag ttt cag tgg ttt gtc agg agt gag gat      624
Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Phe Val Arg Ser Glu Asp         
        195                 200                 205                     

ggt tct tcc gat tcg att gac atg agt gtc gtt gcc cat tgc cac ggt      672
Gly Ser Ser Asp Ser Ile Asp Met Ser Val Val Ala His Cys His Gly         
    210                 215                 220                         

cgt cgt acg gat tac tta atg tcc tct cat gat tca ctc act gtc act      720
Arg Arg Thr Asp Tyr Leu Met Ser Ser His Asp Ser Leu Thr Val Thr         
225                 230                 235                 240         

ggt aac tcg gtc tct ctc gtg ttc aac tta gat tac atc aca tcg cct      768
Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Ser Pro         
                245                 250                 255             

ggc gtg gat tat gct cgt ctg att cca tgt cat gga ttt caa caa gca      816
Gly Val Asp Tyr Ala Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

acc ttc ccc gtt gac att tcc ttc aca aaa agc gac gtt aca cac acg      864
Thr Phe Pro Val Asp Ile Ser Phe Thr Lys Ser Asp Val Thr His Thr         
        275                 280                 285                     

tat cag gtc tat ggc gca ttc gat ggg cct cgt gtc ttc aaa gta acg      912
Tyr Gln Val Tyr Gly Ala Phe Asp Gly Pro Arg Val Phe Lys Val Thr         
    290                 295                 300                         

ttc tcg ccg ggt gaa act ggt gcg acg aat ata cga ttc ttg acc gtg      960
Phe Ser Pro Gly Glu Thr Gly Ala Thr Asn Ile Arg Phe Leu Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gac acc taa                                          981
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  12
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 42563-4/2005 segment 1 encoding the minor outer capsid protein sigma C

<400>  12

Met Ala Gly Leu Thr Pro Leu Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Thr Ser Ile Ser Pro Gly Asp Leu Thr Pro 
            20                  25                  30          


Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ile Cys Asp Thr Leu Ser 
        35                  40                  45              


Gly Ser Val Gly Gln Leu Thr Thr Met Met Ser Asn Leu Ser Ala Arg 
    50                  55                  60                  


Leu Asp Asp Leu Thr Ile Val Ser Arg Asp Met Ala Thr Asp Leu Arg 
65                  70                  75                  80  


Asn Val Gln Gly Ser Val Ser Ala Leu Arg Thr Ser Leu Asp His Leu 
                85                  90                  95      


Ser Gly Asp Val Ser Ala Leu Ser Gln Ser Leu Ser Ala His Asp Ser 
            100                 105                 110         


Gln Leu Ser Thr Leu Ser Val Ser Val Ser Ala Leu Ser Thr Asp Val 
        115                 120                 125             


Ser Asn Leu Lys Arg Asp Val Ala Ser Ser Ala Leu Asn Ile Ser Asp 
    130                 135                 140                 


Ile Gln Arg Arg Val Ala Ala Leu Glu Ser Gly Ser Gly Ala Val Leu 
145                 150                 155                 160 


Thr Phe Arg Ala Pro Leu Arg Leu Asp Gly Asp Ser Val Ser Leu Asp 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Glu Arg Ala Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Phe Val Arg Ser Glu Asp 
        195                 200                 205             


Gly Ser Ser Asp Ser Ile Asp Met Ser Val Val Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Leu Met Ser Ser His Asp Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Ser Pro 
                245                 250                 255     


Gly Val Asp Tyr Ala Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Ile Ser Phe Thr Lys Ser Asp Val Thr His Thr 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Asp Gly Pro Arg Val Phe Lys Val Thr 
    290                 295                 300                 


Phe Ser Pro Gly Glu Thr Gly Ala Thr Asn Ile Arg Phe Leu Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  13
<211>  978
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 55957 segment encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(978)

<400>  13
atg gaa ggt ctc aat cag tca cag cga aga gag gtc gtg ggg ctg ata       48
Met Glu Gly Leu Asn Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg agc gtg act ata agt cct ggc gat ttg acg caa       96
Leu Ser Leu Thr Ser Ser Val Thr Ile Ser Pro Gly Asp Leu Thr Gln         
            20                  25                  30                  

cta cgt gag cgt atc tcg gca tta gaa tct gct aac gcg tcg tta aat      144
Leu Arg Glu Arg Ile Ser Ala Leu Glu Ser Ala Asn Ala Ser Leu Asn         
        35                  40                  45                      

gag gct att gaa ggc gtg tta act cag ttg gtg gat ttg tca cag aag      192
Glu Ala Ile Glu Gly Val Leu Thr Gln Leu Val Asp Leu Ser Gln Lys         
    50                  55                  60                          

ctg agc aat gca gcg gac gct atg gtt gaa tta cga gga gag tta aat      240
Leu Ser Asn Ala Ala Asp Ala Met Val Glu Leu Arg Gly Glu Leu Asn         
65                  70                  75                  80          

tca ttg act gct agc gtt cag att atc cag tcc tct ttg aaa tca ctt      288
Ser Leu Thr Ala Ser Val Gln Ile Ile Gln Ser Ser Leu Lys Ser Leu         
                85                  90                  95              

aca gac agt atg tcg gat ctt tct gac cga acg act gct aat acc tcg      336
Thr Asp Ser Met Ser Asp Leu Ser Asp Arg Thr Thr Ala Asn Thr Ser         
            100                 105                 110                 

tcg atc acg aat ctg gca agt aag gtg gat ggt ctt acg gtc gat gtg      384
Ser Ile Thr Asn Leu Ala Ser Lys Val Asp Gly Leu Thr Val Asp Val         
        115                 120                 125                     

act aac ctt aag cgg gac gtg tca aat cag ggt ctt aaa gtt act agt      432
Thr Asn Leu Lys Arg Asp Val Ser Asn Gln Gly Leu Lys Val Thr Ser         
    130                 135                 140                         

ctc gaa cag cgt gta tct agt tta gag tct ggc gtt ggt tct gtc cct      480
Leu Glu Gln Arg Val Ser Ser Leu Glu Ser Gly Val Gly Ser Val Pro         
145                 150                 155                 160         

aca ttt gct gct ccc ctc aaa ttg gaa agc ggg act gtc tct ctc gat      528
Thr Phe Ala Ala Pro Leu Lys Leu Glu Ser Gly Thr Val Ser Leu Asp         
                165                 170                 175             

tta gat cct tat ttt tgt tct gtg gac cat aat ctt acg tcg tat tcc      576
Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gca agt gcg ata ttg atg aat ttt cag tgg ctt gtc cgc agt gag gga      624
Ala Ser Ala Ile Leu Met Asn Phe Gln Trp Leu Val Arg Ser Glu Gly         
        195                 200                 205                     

gga tcg tct gac tcg ttt gat atg aat gtg aca gct cat agc cat ggc      672
Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly         
    210                 215                 220                         

cag agg aca gat tat atg atg tct act act cag tcg ttg act gtt act      720
Gln Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr         
225                 230                 235                 240         

ggg aat cct gtc acc cta gtc ttt gat ctt aac gct ctt att tcc ccg      768
Gly Asn Pro Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro         
                245                 250                 255             

ccc tcc gat tat tct cgc tta ata cca tgt cat ggc ttc caa caa gca      816
Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

acg ttc ccg gtg gat ctt tcc ttc aag cgc gat gat gtc acg cac tca      864
Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Thr His Ser         
        275                 280                 285                     

tat cag gtg tat ggt tcg tat aca acc cct cgt gtt ttc aag ata acc      912
Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Val Phe Lys Ile Thr         
    290                 295                 300                         

ttc tct cct ggt aac cca gtg cct gcg gtc ata cgc ttc ata acc gtg      960
Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Val         
305                 310                 315                 320         

cgt acg ggc atc gat acc                                              978
Arg Thr Gly Ile Asp Thr                                                 
                325                                                     


<210>  14
<211>  326
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 55957 segment encoding the minor outer capsid protein sigma C

<400>  14

Met Glu Gly Leu Asn Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Val Thr Ile Ser Pro Gly Asp Leu Thr Gln 
            20                  25                  30          


Leu Arg Glu Arg Ile Ser Ala Leu Glu Ser Ala Asn Ala Ser Leu Asn 
        35                  40                  45              


Glu Ala Ile Glu Gly Val Leu Thr Gln Leu Val Asp Leu Ser Gln Lys 
    50                  55                  60                  


Leu Ser Asn Ala Ala Asp Ala Met Val Glu Leu Arg Gly Glu Leu Asn 
65                  70                  75                  80  


Ser Leu Thr Ala Ser Val Gln Ile Ile Gln Ser Ser Leu Lys Ser Leu 
                85                  90                  95      


Thr Asp Ser Met Ser Asp Leu Ser Asp Arg Thr Thr Ala Asn Thr Ser 
            100                 105                 110         


Ser Ile Thr Asn Leu Ala Ser Lys Val Asp Gly Leu Thr Val Asp Val 
        115                 120                 125             


Thr Asn Leu Lys Arg Asp Val Ser Asn Gln Gly Leu Lys Val Thr Ser 
    130                 135                 140                 


Leu Glu Gln Arg Val Ser Ser Leu Glu Ser Gly Val Gly Ser Val Pro 
145                 150                 155                 160 


Thr Phe Ala Ala Pro Leu Lys Leu Glu Ser Gly Thr Val Ser Leu Asp 
                165                 170                 175     


Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Ile Leu Met Asn Phe Gln Trp Leu Val Arg Ser Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly 
    210                 215                 220                 


Gln Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Pro Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro 
                245                 250                 255     


Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Thr His Ser 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Val Phe Lys Ile Thr 
    290                 295                 300                 


Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Val 
305                 310                 315                 320 


Arg Thr Gly Ile Asp Thr 
                325     


<210>  15
<211>  969
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 55958 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(969)

<220>
<221>  misc_feature
<222>  (968)..(969)
<223>  n = a, c, g or t

<400>  15
atg gaa ggg tta act cag tca caa cga aga gaa gtc gtg ggg ctg ata       48
Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tct ttg act tcg agc gcg aat ata agc act gga gat tta gct cag       96
Leu Ser Leu Thr Ser Ser Ala Asn Ile Ser Thr Gly Asp Leu Ala Gln         
            20                  25                  30                  

att cgt agc cgc cta tcg gcg ttg gaa tca tcc aat gcg tca ttg agt      144
Ile Arg Ser Arg Leu Ser Ala Leu Glu Ser Ser Asn Ala Ser Leu Ser         
        35                  40                  45                      

gag act gta aat ggt gcg gtg agt cag tta gta gtc ttg tct tcg cga      192
Glu Thr Val Asn Gly Ala Val Ser Gln Leu Val Val Leu Ser Ser Arg         
    50                  55                  60                          

atc gac aat cta gcc gct act gtg gct gat gga cag ctg gaa ttg cgc      240
Ile Asp Asn Leu Ala Ala Thr Val Ala Asp Gly Gln Leu Glu Leu Arg         
65                  70                  75                  80          

tct ttg gtc atg gat gtt aag aat atc cga tcg tta tta gat gat gtc      288
Ser Leu Val Met Asp Val Lys Asn Ile Arg Ser Leu Leu Asp Asp Val         
                85                  90                  95              

tct acg acc gtg gta tct tta tcc gct tca gtt cgc gaa cat gac tca      336
Ser Thr Thr Val Val Ser Leu Ser Ala Ser Val Arg Glu His Asp Ser         
            100                 105                 110                 

tca att att gat tta agg cgt cag ttc ggt ttg ctt tcc acc gat aca      384
Ser Ile Ile Asp Leu Arg Arg Gln Phe Gly Leu Leu Ser Thr Asp Thr         
        115                 120                 125                     

gcc aat ctt aaa gct gat gtt gcc gct cag tcc ctc ata gtc act agt      432
Ala Asn Leu Lys Ala Asp Val Ala Ala Gln Ser Leu Ile Val Thr Ser         
    130                 135                 140                         

ctt gag cag cgt gtt act gcc cta gaa tct agt acc ggc tcc ctc cct      480
Leu Glu Gln Arg Val Thr Ala Leu Glu Ser Ser Thr Gly Ser Leu Pro         
145                 150                 155                 160         

tcg ttc tcc gcc cca ctc aaa cta gat gat ggg acc gtt tca tta gac      528
Ser Phe Ser Ala Pro Leu Lys Leu Asp Asp Gly Thr Val Ser Leu Asp         
                165                 170                 175             

tta gat cct tac ttc tgy tcg gtg gat cat aat cta aca tct tat tct      576
Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gcc agt gcg cag tta atg caa ttc caa tgg ttc gtg aga ggt gag gga      624
Ala Ser Ala Gln Leu Met Gln Phe Gln Trp Phe Val Arg Gly Glu Gly         
        195                 200                 205                     

ggt tca tct gat tcc ata gat atg agc gtc act gct cat tgc cac ggc      672
Gly Ser Ser Asp Ser Ile Asp Met Ser Val Thr Ala His Cys His Gly         
    210                 215                 220                         

cgg cgg act gat tac atg atg tcc acc act caa tcc cta act gtt act      720
Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr         
225                 230                 235                 240         

ggt acc tcc gtg tcc ctt gtc ttt gat tta aat aca ctc gtt act cca      768
Gly Thr Ser Val Ser Leu Val Phe Asp Leu Asn Thr Leu Val Thr Pro         
                245                 250                 255             

cct tct gac tac tcg cgc ctt att ccg tgt cat ggg ttc cag cag gca      816
Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

aca ttt cca gtt gat ctt tcg ttc aaa agg gat gaa gag aca cac tct      864
Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Glu Glu Thr His Ser         
        275                 280                 285                     

tat cag gta tat ggt tca tac tcg acg ccc gcg tgt ctt aag gtg act      912
Tyr Gln Val Tyr Gly Ser Tyr Ser Thr Pro Ala Cys Leu Lys Val Thr         
    290                 295                 300                         

ttc tcc ccc tgg ggc ttc cag tta ccg gca gtc att cga ttc cta acc      960
Phe Ser Pro Trp Gly Phe Gln Leu Pro Ala Val Ile Arg Phe Leu Thr         
305                 310                 315                 320         

ctg cga cnn                                                          969
Leu Arg Xaa                                                             
                                                                        


<210>  16
<211>  323
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 55958 segment 1 encoding the minor outer capsid protein sigma C

<220>
<221>  misc_feature
<222>  (323)..(323)
<223>  The 'Xaa' at location 323 stands for Gln, His, Arg, Pro, or Leu.

<400>  16

Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Ala Asn Ile Ser Thr Gly Asp Leu Ala Gln 
            20                  25                  30          


Ile Arg Ser Arg Leu Ser Ala Leu Glu Ser Ser Asn Ala Ser Leu Ser 
        35                  40                  45              


Glu Thr Val Asn Gly Ala Val Ser Gln Leu Val Val Leu Ser Ser Arg 
    50                  55                  60                  


Ile Asp Asn Leu Ala Ala Thr Val Ala Asp Gly Gln Leu Glu Leu Arg 
65                  70                  75                  80  


Ser Leu Val Met Asp Val Lys Asn Ile Arg Ser Leu Leu Asp Asp Val 
                85                  90                  95      


Ser Thr Thr Val Val Ser Leu Ser Ala Ser Val Arg Glu His Asp Ser 
            100                 105                 110         


Ser Ile Ile Asp Leu Arg Arg Gln Phe Gly Leu Leu Ser Thr Asp Thr 
        115                 120                 125             


Ala Asn Leu Lys Ala Asp Val Ala Ala Gln Ser Leu Ile Val Thr Ser 
    130                 135                 140                 


Leu Glu Gln Arg Val Thr Ala Leu Glu Ser Ser Thr Gly Ser Leu Pro 
145                 150                 155                 160 


Ser Phe Ser Ala Pro Leu Lys Leu Asp Asp Gly Thr Val Ser Leu Asp 
                165                 170                 175     


Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Gln Leu Met Gln Phe Gln Trp Phe Val Arg Gly Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Ile Asp Met Ser Val Thr Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Thr Ser Val Ser Leu Val Phe Asp Leu Asn Thr Leu Val Thr Pro 
                245                 250                 255     


Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Glu Glu Thr His Ser 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ser Tyr Ser Thr Pro Ala Cys Leu Lys Val Thr 
    290                 295                 300                 


Phe Ser Pro Trp Gly Phe Gln Leu Pro Ala Val Ile Arg Phe Leu Thr 
305                 310                 315                 320 


Leu Arg Xaa 
            


<210>  17
<211>  966
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 55959 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(966)

<400>  17
atg gca gga tta act ccc tta cag cga aga gaa gtc gtg ggc ttg ata       48
Met Ala Gly Leu Thr Pro Leu Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tcc ttg act tcg agc gcg aat aca aac agt gga gat ttg acg ccc       96
Leu Ser Leu Thr Ser Ser Ala Asn Thr Asn Ser Gly Asp Leu Thr Pro         
            20                  25                  30                  

ata tat gac cgt ctg ctt agt atg gag tcc gcc gtt gcg tca ttg agc      144
Ile Tyr Asp Arg Leu Leu Ser Met Glu Ser Ala Val Ala Ser Leu Ser         
        35                  40                  45                      

gct tcc gtt agc ggc tta ttg cag aaa gta tca gat ttg gac tct gat      192
Ala Ser Val Ser Gly Leu Leu Gln Lys Val Ser Asp Leu Asp Ser Asp         
    50                  55                  60                          

ttg cag aat gtc act tca tcc tta ggc cag gct gat tcg gcg ttg acc      240
Leu Gln Asn Val Thr Ser Ser Leu Gly Gln Ala Asp Ser Ala Leu Thr         
65                  70                  75                  80          

gca ttg tcc aag gaa ctg cac cag ttg agc agc tct att gaa aat gtc      288
Ala Leu Ser Lys Glu Leu His Gln Leu Ser Ser Ser Ile Glu Asn Val         
                85                  90                  95              

tca acg tct gtt tca gat gtg tcg act act gta tca ggg cat cag gct      336
Ser Thr Ser Val Ser Asp Val Ser Thr Thr Val Ser Gly His Gln Ala         
            100                 105                 110                 

gcg ata gcc gcc gta caa act tcc gtt cac gct aat acg act gac att      384
Ala Ile Ala Ala Val Gln Thr Ser Val His Ala Asn Thr Thr Asp Ile         
        115                 120                 125                     

agc aat ctg aaa agc agt gta tct act atc agc tta aat ctc gct gat      432
Ser Asn Leu Lys Ser Ser Val Ser Thr Ile Ser Leu Asn Leu Ala Asp         
    130                 135                 140                         

ctt gaa cga cgt gta gac gac att gga tca ggt tca ggt tcc aac ctg      480
Leu Glu Arg Arg Val Asp Asp Ile Gly Ser Gly Ser Gly Ser Asn Leu         
145                 150                 155                 160         

agg ttt tcg tcc ccg ctg agt ttg tcc cag ggt gtg gtg tca ctg atc      528
Arg Phe Ser Ser Pro Leu Ser Leu Ser Gln Gly Val Val Ser Leu Ile         
                165                 170                 175             

atg gat cct tac ttc tgc tcg gac aat cag gcg tta acc tcg tat tcc      576
Met Asp Pro Tyr Phe Cys Ser Asp Asn Gln Ala Leu Thr Ser Tyr Ser         
            180                 185                 190                 

aca gac gcg cag ttg atg caa ttc cag tgg cta gct aga ggt gag ggt      624
Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Gly         
        195                 200                 205                     

ggc tca tcg agt tcc gtc gaa atg ctc gtc aat gca cat tgt cat gga      672
Gly Ser Ser Ser Ser Val Glu Met Leu Val Asn Ala His Cys His Gly         
    210                 215                 220                         

cgc cgt acc gat tat atg atg tcc act aca gaa aac ttc acc gtt aca      720
Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Asn Phe Thr Val Thr         
225                 230                 235                 240         

gat aac tct gtg tca ctg gtt ttc aat cta gac tat att act aaa cca      768
Asp Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Lys Pro         
                245                 250                 255             

cct tct gat atg tcg cgc ttg ata cca cgc gct ggg ttc cag gcc gct      816
Pro Ser Asp Met Ser Arg Leu Ile Pro Arg Ala Gly Phe Gln Ala Ala         
            260                 265                 270                 

tct ttt ccc gtg gac gtc tcc ttc acc cgt gac acg aca acg cac gct      864
Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Thr Thr Thr His Ala         
        275                 280                 285                     

tac cag gtg tat ggt act ttt tct agt cct cgc att ttt aag atc aca      912
Tyr Gln Val Tyr Gly Thr Phe Ser Ser Pro Arg Ile Phe Lys Ile Thr         
    290                 295                 300                         

ttt ctt aca ggt ggt act gga acc tgc aaa cat tcg ttt ctt gag ccg      960
Phe Leu Thr Gly Gly Thr Gly Thr Cys Lys His Ser Phe Leu Glu Pro         
305                 310                 315                 320         

gcg acg                                                              966
Ala Thr                                                                 
                                                                        


<210>  18
<211>  322
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 55959 segment 1 encoding the minor outer capsid protein sigma C

<400>  18

Met Ala Gly Leu Thr Pro Leu Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Ala Asn Thr Asn Ser Gly Asp Leu Thr Pro 
            20                  25                  30          


Ile Tyr Asp Arg Leu Leu Ser Met Glu Ser Ala Val Ala Ser Leu Ser 
        35                  40                  45              


Ala Ser Val Ser Gly Leu Leu Gln Lys Val Ser Asp Leu Asp Ser Asp 
    50                  55                  60                  


Leu Gln Asn Val Thr Ser Ser Leu Gly Gln Ala Asp Ser Ala Leu Thr 
65                  70                  75                  80  


Ala Leu Ser Lys Glu Leu His Gln Leu Ser Ser Ser Ile Glu Asn Val 
                85                  90                  95      


Ser Thr Ser Val Ser Asp Val Ser Thr Thr Val Ser Gly His Gln Ala 
            100                 105                 110         


Ala Ile Ala Ala Val Gln Thr Ser Val His Ala Asn Thr Thr Asp Ile 
        115                 120                 125             


Ser Asn Leu Lys Ser Ser Val Ser Thr Ile Ser Leu Asn Leu Ala Asp 
    130                 135                 140                 


Leu Glu Arg Arg Val Asp Asp Ile Gly Ser Gly Ser Gly Ser Asn Leu 
145                 150                 155                 160 


Arg Phe Ser Ser Pro Leu Ser Leu Ser Gln Gly Val Val Ser Leu Ile 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Asp Asn Gln Ala Leu Thr Ser Tyr Ser 
            180                 185                 190         


Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Gly 
        195                 200                 205             


Gly Ser Ser Ser Ser Val Glu Met Leu Val Asn Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Asn Phe Thr Val Thr 
225                 230                 235                 240 


Asp Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Lys Pro 
                245                 250                 255     


Pro Ser Asp Met Ser Arg Leu Ile Pro Arg Ala Gly Phe Gln Ala Ala 
            260                 265                 270         


Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Thr Thr Thr His Ala 
        275                 280                 285             


Tyr Gln Val Tyr Gly Thr Phe Ser Ser Pro Arg Ile Phe Lys Ile Thr 
    290                 295                 300                 


Phe Leu Thr Gly Gly Thr Gly Thr Cys Lys His Ser Phe Leu Glu Pro 
305                 310                 315                 320 


Ala Thr 
        


<210>  19
<211>  960
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 58554 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(960)

<220>
<221>  misc_feature
<222>  (960)..(960)
<223>  n = a, c, g or t

<400>  19
atg gcc gga ctc act cca tca cag cga aga gaa gtc gtc ggg atg ata       48
Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Met Ile         
1               5                   10                  15              

ctc tca ttg act tcg agc acg agt ata agt cct gga gat ttg gca cca       96
Leu Ser Leu Thr Ser Ser Thr Ser Ile Ser Pro Gly Asp Leu Ala Pro         
            20                  25                  30                  

ata tac gat cgc ctc tct gcc gtt gag acg att tgc gcc acc tta agt      144
Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ile Cys Ala Thr Leu Ser         
        35                  40                  45                      

gac tct gtg agt cag ctg att tca aag acg tct gat cta tct aat cgt      192
Asp Ser Val Ser Gln Leu Ile Ser Lys Thr Ser Asp Leu Ser Asn Arg         
    50                  55                  60                          

tta aat ggc ttg gtg aat gtg tcc caa gat ata gct aac gac tta aga      240
Leu Asn Gly Leu Val Asn Val Ser Gln Asp Ile Ala Asn Asp Leu Arg         
65                  70                  75                  80          

gat att caa agt cgt gtg tct gca ctt caa aca ttg gta gat ggt gtg      288
Asp Ile Gln Ser Arg Val Ser Ala Leu Gln Thr Leu Val Asp Gly Val         
                85                  90                  95              

tcc agt gat gtt tct ctc cta tca cag tcg ttg tct gct cac gat tca      336
Ser Ser Asp Val Ser Leu Leu Ser Gln Ser Leu Ser Ala His Asp Ser         
            100                 105                 110                 

cag ctc tcc gag ctt tcc tct tcg gtt agc act ctg tct act gac atg      384
Gln Leu Ser Glu Leu Ser Ser Ser Val Ser Thr Leu Ser Thr Asp Met         
        115                 120                 125                     

tca aac ctt caa cgt gat gtg act gca tct gca ctc aat att tct gat      432
Ser Asn Leu Gln Arg Asp Val Thr Ala Ser Ala Leu Asn Ile Ser Asp         
    130                 135                 140                         

ctt cag caa cgt gtc gcc ggt ttg gaa tcg agc tct ggg tca tct ctc      480
Leu Gln Gln Arg Val Ala Gly Leu Glu Ser Ser Ser Gly Ser Ser Leu         
145                 150                 155                 160         

acg ttc ctt gct cca ctt cgg gtt gat gga ggt tcc gtc tcg ttg gac      528
Thr Phe Leu Ala Pro Leu Arg Val Asp Gly Gly Ser Val Ser Leu Asp         
                165                 170                 175             

atg gat ccg tac ttt tgc tcc gaa agg tcg aac tta aca tcc tac tcg      576
Met Asp Pro Tyr Phe Cys Ser Glu Arg Ser Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gcg agc gca cag ttg ttg cag ttt cag tgg tac gtt agg agt gag ggt      624
Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Tyr Val Arg Ser Glu Gly         
        195                 200                 205                     

ggc tct tca gat tcg att gac atg agc gtg gtg gct cat tgc cac ggt      672
Gly Ser Ser Asp Ser Ile Asp Met Ser Val Val Ala His Cys His Gly         
    210                 215                 220                         

cgt cgc acg gat tat ttg atg tcc act cat gat tcg ctc acc gtc act      720
Arg Arg Thr Asp Tyr Leu Met Ser Thr His Asp Ser Leu Thr Val Thr         
225                 230                 235                 240         

ggc aac tca gtg tcc tta gta ttc aat cta gac tac atc acc acg tct      768
Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Thr Ser         
                245                 250                 255             

ggt gtg gag tac gct cgt ctg atc ccg agt cat ggt ttc caa cag gct      816
Gly Val Glu Tyr Ala Arg Leu Ile Pro Ser His Gly Phe Gln Gln Ala         
            260                 265                 270                 

act ttt ccc gtt gat atc tct ttc acg aga aat gac acc aca cat acg      864
Thr Phe Pro Val Asp Ile Ser Phe Thr Arg Asn Asp Thr Thr His Thr         
        275                 280                 285                     

tac caa gtt tat ggt gca ttt gat ggc cct cgc gtg ttt aaa gta aca      912
Tyr Gln Val Tyr Gly Ala Phe Asp Gly Pro Arg Val Phe Lys Val Thr         
    290                 295                 300                         

ttc tcg ccg ggc gag aac cag cac gac caa atg tgc gat tca acc gan      960
Phe Ser Pro Gly Glu Asn Gln His Asp Gln Met Cys Asp Ser Thr Xaa         
305                 310                 315                 320         


<210>  20
<211>  320
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 58554 segment 1 encoding the minor outer capsid protein sigma C

<220>
<221>  misc_feature
<222>  (320)..(320)
<223>  The 'Xaa' at location 320 stands for Glu, or Asp.

<400>  20

Met Ala Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Met Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Thr Ser Ile Ser Pro Gly Asp Leu Ala Pro 
            20                  25                  30          


Ile Tyr Asp Arg Leu Ser Ala Val Glu Thr Ile Cys Ala Thr Leu Ser 
        35                  40                  45              


Asp Ser Val Ser Gln Leu Ile Ser Lys Thr Ser Asp Leu Ser Asn Arg 
    50                  55                  60                  


Leu Asn Gly Leu Val Asn Val Ser Gln Asp Ile Ala Asn Asp Leu Arg 
65                  70                  75                  80  


Asp Ile Gln Ser Arg Val Ser Ala Leu Gln Thr Leu Val Asp Gly Val 
                85                  90                  95      


Ser Ser Asp Val Ser Leu Leu Ser Gln Ser Leu Ser Ala His Asp Ser 
            100                 105                 110         


Gln Leu Ser Glu Leu Ser Ser Ser Val Ser Thr Leu Ser Thr Asp Met 
        115                 120                 125             


Ser Asn Leu Gln Arg Asp Val Thr Ala Ser Ala Leu Asn Ile Ser Asp 
    130                 135                 140                 


Leu Gln Gln Arg Val Ala Gly Leu Glu Ser Ser Ser Gly Ser Ser Leu 
145                 150                 155                 160 


Thr Phe Leu Ala Pro Leu Arg Val Asp Gly Gly Ser Val Ser Leu Asp 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Glu Arg Ser Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Gln Leu Leu Gln Phe Gln Trp Tyr Val Arg Ser Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Ile Asp Met Ser Val Val Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Leu Met Ser Thr His Asp Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Thr Ser 
                245                 250                 255     


Gly Val Glu Tyr Ala Arg Leu Ile Pro Ser His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Ile Ser Phe Thr Arg Asn Asp Thr Thr His Thr 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Asp Gly Pro Arg Val Phe Lys Val Thr 
    290                 295                 300                 


Phe Ser Pro Gly Glu Asn Gln His Asp Gln Met Cys Asp Ser Thr Xaa 
305                 310                 315                 320 


<210>  21
<211>  963
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 58555 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(963)

<400>  21
atg gaa ggc tta act cag tca cag cga aga gag gtc gtg ggg ctg ata       48
Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg agc gtg act aca agt cct ggc gat ttg acg gaa       96
Leu Ser Leu Thr Ser Ser Val Thr Thr Ser Pro Gly Asp Leu Thr Glu         
            20                  25                  30                  

ctg cgt gaa cgc gtc tca gcg tta gaa tct gcc act gcg tcc ttg aat      144
Leu Arg Glu Arg Val Ser Ala Leu Glu Ser Ala Thr Ala Ser Leu Asn         
        35                  40                  45                      

gag act ata aaa ggc gtg ttg ggc caa ttg gta gat ttg gca cag aag      192
Glu Thr Ile Lys Gly Val Leu Gly Gln Leu Val Asp Leu Ala Gln Lys         
    50                  55                  60                          

ttg agt aat gcg gca gac gct ata gtc ggg ttg cga gga gag ttg aac      240
Leu Ser Asn Ala Ala Asp Ala Ile Val Gly Leu Arg Gly Glu Leu Asn         
65                  70                  75                  80          

tca tta gct gct agc gtc caa act att caa tct tct ttg aga tca ctt      288
Ser Leu Ala Ala Ser Val Gln Thr Ile Gln Ser Ser Leu Arg Ser Leu         
                85                  90                  95              

aca gac agt gtg tcg gat ctt tct ggc caa gtg act act aat gcg tcg      336
Thr Asp Ser Val Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Ala Ser         
            100                 105                 110                 

tcg atc acg aat gtg aag ggt atg ttg gat ggt ctt acg gtc gac gtg      384
Ser Ile Thr Asn Val Lys Gly Met Leu Asp Gly Leu Thr Val Asp Val         
        115                 120                 125                     

gct aat ctt aag cgt gac gca tca aat cag ggt ctt aaa att act gat      432
Ala Asn Leu Lys Arg Asp Ala Ser Asn Gln Gly Leu Lys Ile Thr Asp         
    130                 135                 140                         

ctc gag cag cgt gta gct ggt tta gag tct ggt tct gga tct att ccc      480
Leu Glu Gln Arg Val Ala Gly Leu Glu Ser Gly Ser Gly Ser Ile Pro         
145                 150                 155                 160         

aca ttc gcc gct cct ctt aag tta gac agc ggg att gta tca ctc gac      528
Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Ile Val Ser Leu Asp         
                165                 170                 175             

ctg gat cct tac ttt tgt tcc gta gat cat aat ctt acg tcg tat tcc      576
Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gcc agt gcg tca tta atg aat ttc cag tgg ctt gtt cga ggt gag gga      624
Ala Ser Ala Ser Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly         
        195                 200                 205                     

gga tct tct gac tca ttc gat atg aat gta aca gct cat agc cat ggc      672
Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly         
    210                 215                 220                         

cag agg acg gac tat atg atg tct act act caa tca ttg act gtt act      720
Gln Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr         
225                 230                 235                 240         

gga aat tca gtc acc ctg gtc ttt gac ctt aac gct ctt atc tct ccg      768
Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro         
                245                 250                 255             

cca tct gat tat tct cgc ttg ata cca tgt cat ggt ttc caa caa gca      816
Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

acg ttt cca gta gac ctt tca ttt aag cga gat gac gtc aca cac tca      864
Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Thr His Ser         
        275                 280                 285                     

tat cag gtg tat ggt tcg tac acg act cct cgc gtt ttc aag ata acc      912
Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Val Phe Lys Ile Thr         
    290                 295                 300                         

ttc tct cct ggc aat cca gtg cct gca gtc ata cgc ttc ata acc ggc      960
Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Gly         
305                 310                 315                 320         

gac                                                                  963
Asp                                                                     
                                                                        


<210>  22
<211>  321
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 58555 segment 1 encoding the minor outer capsid protein sigma C

<400>  22

Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Val Thr Thr Ser Pro Gly Asp Leu Thr Glu 
            20                  25                  30          


Leu Arg Glu Arg Val Ser Ala Leu Glu Ser Ala Thr Ala Ser Leu Asn 
        35                  40                  45              


Glu Thr Ile Lys Gly Val Leu Gly Gln Leu Val Asp Leu Ala Gln Lys 
    50                  55                  60                  


Leu Ser Asn Ala Ala Asp Ala Ile Val Gly Leu Arg Gly Glu Leu Asn 
65                  70                  75                  80  


Ser Leu Ala Ala Ser Val Gln Thr Ile Gln Ser Ser Leu Arg Ser Leu 
                85                  90                  95      


Thr Asp Ser Val Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Ala Ser 
            100                 105                 110         


Ser Ile Thr Asn Val Lys Gly Met Leu Asp Gly Leu Thr Val Asp Val 
        115                 120                 125             


Ala Asn Leu Lys Arg Asp Ala Ser Asn Gln Gly Leu Lys Ile Thr Asp 
    130                 135                 140                 


Leu Glu Gln Arg Val Ala Gly Leu Glu Ser Gly Ser Gly Ser Ile Pro 
145                 150                 155                 160 


Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Ile Val Ser Leu Asp 
                165                 170                 175     


Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Ser Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly 
    210                 215                 220                 


Gln Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro 
                245                 250                 255     


Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Thr His Ser 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Val Phe Lys Ile Thr 
    290                 295                 300                 


Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Gly 
305                 310                 315                 320 


Asp 
    


<210>  23
<211>  978
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 60403 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  misc_feature
<222>  (161)..(161)
<223>  k = g or t

<400>  23
atggccggat taactccctc acagcgaaga gaagtcgtgg gattgatact ctccttgact     60

tcgagcgcga atacaaattg tggagatttg acgcccgtgt atgatcgtct gctcagtctg    120

gagtccgctg ttgcatcact gaatggctct gttagcggct cgtctcagaa ggtgttagat    180

ttggagtcag gtttacaaga cgtcgcttca tctttaggcc agactaattc aacgttgact    240

gagttatcga aaggactgcg tcagctgagc agttccgttg acagcctcgt ctcgtctgtt    300

tcagatctat cgaccgctgt gtccgggcat caagacgcca tagttactat tcaaacgtcc    360

gtccacgcta actcaactga tatcagtaac ctgagaagca gcgtatctac cattagcttg    420

aatatcaccg atctcgagca acgcgtggaa aagattgaat caggcgcaag ctccagtcta    480

cggtttacgt cgcctctgag tttgtctcaa ggcgtggtgt cactgattat ggatccttac    540

ttctgttcag acaacatggc actaacctca tattctacag atgctcaact gatgcagttt    600

cagtggttgg ctagaggtga ggatgggtca tcaagctctg ttgatatgct cgttaatgct    660

cactgtcatg ggcgtcgcac tgattatatg atgtccacca aagagagttt cactgttacg    720

ggcaattctg tgtccttggt tttcaatctg gactatatta ctaaaccgcc ctctgacatg    780

tcgcgtttag taccccgcgc tggattccgg gctgcttctt ttcctgtaga cgtctctttc    840

acccgtgaca caacaccgca tgcttaccag gtgtacggtg ccttctctag tcctcgcatc    900

tttaagatta cattccttac aggtggcact gggactgcaa atctccgttt cttgaccgtg    960

cgtacgggca tcgacacc                                                  978


<210>  24
<211>  951
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 54647 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(951)

<400>  24
atg gac gga tta act ccc tca cag cga aga gaa gtc gtg gga ttg ata       48
Met Asp Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tcc ttg act tcg agc gtg aat aca aac tgt gga gat ttg acg cct       96
Leu Ser Leu Thr Ser Ser Val Asn Thr Asn Cys Gly Asp Leu Thr Pro         
            20                  25                  30                  

gta tac gac cgt ctg ctt agt ctg gag tcc gcc gtt gcg tcg ctg aac      144
Val Tyr Asp Arg Leu Leu Ser Leu Glu Ser Ala Val Ala Ser Leu Asn         
        35                  40                  45                      

aac tct gtt aat gac ttg ttg cag aag gta tca gat ttt gaa tct gac      192
Asn Ser Val Asn Asp Leu Leu Gln Lys Val Ser Asp Phe Glu Ser Asp         
    50                  55                  60                          

ttg caa gac gcc acc tca tct cta ggc caa gcc aat ttg atg cta acc      240
Leu Gln Asp Ala Thr Ser Ser Leu Gly Gln Ala Asn Leu Met Leu Thr         
65                  70                  75                  80          

aag tta tct gag gac ttg cgt cag ttg agc agc tct gtt gac aac ctc      288
Lys Leu Ser Glu Asp Leu Arg Gln Leu Ser Ser Ser Val Asp Asn Leu         
                85                  90                  95              

gtc acg tcc gtt tct gat cta tcg acc act gta tcc ggg cat cag gac      336
Val Thr Ser Val Ser Asp Leu Ser Thr Thr Val Ser Gly His Gln Asp         
            100                 105                 110                 

gca ata gcc gct ata caa act tcc gtt cat gcc aat aca acc gat att      384
Ala Ile Ala Ala Ile Gln Thr Ser Val His Ala Asn Thr Thr Asp Ile         
        115                 120                 125                     

agt aac tta aaa agc aac gta tct act att ggc ttg aat atc aca gat      432
Ser Asn Leu Lys Ser Asn Val Ser Thr Ile Gly Leu Asn Ile Thr Asp         
    130                 135                 140                         

ctc gcg caa cgt gtg gca aac att gaa tca agc tcg ggc tct agt tta      480
Leu Ala Gln Arg Val Ala Asn Ile Glu Ser Ser Ser Gly Ser Ser Leu         
145                 150                 155                 160         

aga ttt gtg tca cct ctg agc ttg tcc caa ggt gta gtg tcc ttg atc      528
Arg Phe Val Ser Pro Leu Ser Leu Ser Gln Gly Val Val Ser Leu Ile         
                165                 170                 175             

atg gat ccc tac ttc tgt tcg gac aat aag gca tta acc tcc tat tcc      576
Met Asp Pro Tyr Phe Cys Ser Asp Asn Lys Ala Leu Thr Ser Tyr Ser         
            180                 185                 190                 

acg gac gct cag ctg atg cag ttc cag tgg ctg gct aga ggt gag gat      624
Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Asp         
        195                 200                 205                     

ggg tca tcg agc tct gtt gat atg ctt gtt aac gca cac tgt cat ggg      672
Gly Ser Ser Ser Ser Val Asp Met Leu Val Asn Ala His Cys His Gly         
    210                 215                 220                         

cgt cgc act gat tat atg atg tcc act aca gag agt ttt act gtc acg      720
Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Ser Phe Thr Val Thr         
225                 230                 235                 240         

ggc aat tct gta tca ttg gtc ttc aac ctg gat tat atc acc aaa ccg      768
Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Lys Pro         
                245                 250                 255             

ccc tct gac atg tcg cgg cta gta cca cgt gct ggt ttc cag gct gct      816
Pro Ser Asp Met Ser Arg Leu Val Pro Arg Ala Gly Phe Gln Ala Ala         
            260                 265                 270                 

tct ttc cct gtg gac gtc tcc ttc act cgt gac aca aca ccg cac gct      864
Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Thr Thr Pro His Ala         
        275                 280                 285                     

tac cag gtg tac ggc gct ttc tct agc cct cgc att ttt aag atc acg      912
Tyr Gln Val Tyr Gly Ala Phe Ser Ser Pro Arg Ile Phe Lys Ile Thr         
    290                 295                 300                         

ttc ctc aca ggc ggt act gga act gca aat ctc cgt ttc                  951
Phe Leu Thr Gly Gly Thr Gly Thr Ala Asn Leu Arg Phe                     
305                 310                 315                             


<210>  25
<211>  317
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 54647 segment 1 encoding the minor outer capsid protein sigma C

<400>  25

Met Asp Gly Leu Thr Pro Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Ser Val Asn Thr Asn Cys Gly Asp Leu Thr Pro 
            20                  25                  30          


Val Tyr Asp Arg Leu Leu Ser Leu Glu Ser Ala Val Ala Ser Leu Asn 
        35                  40                  45              


Asn Ser Val Asn Asp Leu Leu Gln Lys Val Ser Asp Phe Glu Ser Asp 
    50                  55                  60                  


Leu Gln Asp Ala Thr Ser Ser Leu Gly Gln Ala Asn Leu Met Leu Thr 
65                  70                  75                  80  


Lys Leu Ser Glu Asp Leu Arg Gln Leu Ser Ser Ser Val Asp Asn Leu 
                85                  90                  95      


Val Thr Ser Val Ser Asp Leu Ser Thr Thr Val Ser Gly His Gln Asp 
            100                 105                 110         


Ala Ile Ala Ala Ile Gln Thr Ser Val His Ala Asn Thr Thr Asp Ile 
        115                 120                 125             


Ser Asn Leu Lys Ser Asn Val Ser Thr Ile Gly Leu Asn Ile Thr Asp 
    130                 135                 140                 


Leu Ala Gln Arg Val Ala Asn Ile Glu Ser Ser Ser Gly Ser Ser Leu 
145                 150                 155                 160 


Arg Phe Val Ser Pro Leu Ser Leu Ser Gln Gly Val Val Ser Leu Ile 
                165                 170                 175     


Met Asp Pro Tyr Phe Cys Ser Asp Asn Lys Ala Leu Thr Ser Tyr Ser 
            180                 185                 190         


Thr Asp Ala Gln Leu Met Gln Phe Gln Trp Leu Ala Arg Gly Glu Asp 
        195                 200                 205             


Gly Ser Ser Ser Ser Val Asp Met Leu Val Asn Ala His Cys His Gly 
    210                 215                 220                 


Arg Arg Thr Asp Tyr Met Met Ser Thr Thr Glu Ser Phe Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Ser Leu Val Phe Asn Leu Asp Tyr Ile Thr Lys Pro 
                245                 250                 255     


Pro Ser Asp Met Ser Arg Leu Val Pro Arg Ala Gly Phe Gln Ala Ala 
            260                 265                 270         


Ser Phe Pro Val Asp Val Ser Phe Thr Arg Asp Thr Thr Pro His Ala 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ala Phe Ser Ser Pro Arg Ile Phe Lys Ile Thr 
    290                 295                 300                 


Phe Leu Thr Gly Gly Thr Gly Thr Ala Asn Leu Arg Phe 
305                 310                 315         


<210>  26
<211>  966
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 55255 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(966)

<400>  26
atg gaa ggt tta agt cag tta cag cga aga gaa gtc gtg ggg ctg ata       48
Met Glu Gly Leu Ser Gln Leu Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tcg ttg act tcg aac gtg act ata agt cct ggc gat tta acg gaa       96
Leu Ser Leu Thr Ser Asn Val Thr Ile Ser Pro Gly Asp Leu Thr Glu         
            20                  25                  30                  

ctg cgt gaa cgc gtc tca gcg tta gaa tct gct act gcg tcg ttg aat      144
Leu Arg Glu Arg Val Ser Ala Leu Glu Ser Ala Thr Ala Ser Leu Asn         
        35                  40                  45                      

gag act gta aag ggc gtg cta ggt cag ctg gtg gat ttg gcg cag aag      192
Glu Thr Val Lys Gly Val Leu Gly Gln Leu Val Asp Leu Ala Gln Lys         
    50                  55                  60                          

ttg agc aac gcg gca gat gct gtg gtt gag ctg cga gga gat ttg aat      240
Leu Ser Asn Ala Ala Asp Ala Val Val Glu Leu Arg Gly Asp Leu Asn         
65                  70                  75                  80          

tca tta acc gtt agc gtc caa act atc caa tcc tct ttg gga tca ctt      288
Ser Leu Thr Val Ser Val Gln Thr Ile Gln Ser Ser Leu Gly Ser Leu         
                85                  90                  95              

aca gaa agc atg tcg gat ctt tcc ggc cag gtg act act aat gct tcg      336
Thr Glu Ser Met Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Ala Ser         
            100                 105                 110                 

tcg atc acg aat ttg agg agt gtg gtg gat ggt ctc aca gtc gac gtg      384
Ser Ile Thr Asn Leu Arg Ser Val Val Asp Gly Leu Thr Val Asp Val         
        115                 120                 125                     

gct aat ctt aag cgc gac atg tca aac cag ggt ctt aaa gtc act ggt      432
Ala Asn Leu Lys Arg Asp Met Ser Asn Gln Gly Leu Lys Val Thr Gly         
    130                 135                 140                         

ctc gag cag cgt gta gct gat ttg gag tct ggc gct gga tct ctt ccc      480
Leu Glu Gln Arg Val Ala Asp Leu Glu Ser Gly Ala Gly Ser Leu Pro         
145                 150                 155                 160         

aca ttt gct gct ccc ctt aaa tta gat agc ggg gtt gta tca ctc gac      528
Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Val Val Ser Leu Asp         
                165                 170                 175             

ctg gat cct tac ttt tgt tct gtg gac cat aat ctt acg tcg tat tcc      576
Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gca agt gca tcg tta atg aat ttt cag tgg ctc gtt cga ggt gag ggc      624
Ala Ser Ala Ser Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly         
        195                 200                 205                     

gga tcg tct gac tct ttc gat atg aat gtg aca gct cat agc cat ggc      672
Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly         
    210                 215                 220                         

cag agg aca gac tat atg atg tct act act caa tca ttg act gtt act      720
Gln Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr         
225                 230                 235                 240         

gga aat tca gtc acc cta gtc ttt gat ctt aac gcc ctt att tct cca      768
Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro         
                245                 250                 255             

ccc tct gat tac tct cgc ttg ata cca tgt cat ggc ttc caa caa gcg      816
Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

acg ttc cca gtg gac ctt tcg ttt aag cga gat gac gtc ata cac tca      864
Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Ile His Ser         
        275                 280                 285                     

tat cag gtg tat ggt tcg tac aca act ccc cgc gtt ttc agg ata aca      912
Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Val Phe Arg Ile Thr         
    290                 295                 300                         

ttc tct ccc ggc aat cca gtg ccc gcg gtc ata cgc ttc ata acc ggc      960
Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Gly         
305                 310                 315                 320         

gac gag                                                              966
Asp Glu                                                                 
                                                                        


<210>  27
<211>  322
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 55255 segment 1 encoding the minor outer capsid protein sigma C

<400>  27

Met Glu Gly Leu Ser Gln Leu Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Asn Val Thr Ile Ser Pro Gly Asp Leu Thr Glu 
            20                  25                  30          


Leu Arg Glu Arg Val Ser Ala Leu Glu Ser Ala Thr Ala Ser Leu Asn 
        35                  40                  45              


Glu Thr Val Lys Gly Val Leu Gly Gln Leu Val Asp Leu Ala Gln Lys 
    50                  55                  60                  


Leu Ser Asn Ala Ala Asp Ala Val Val Glu Leu Arg Gly Asp Leu Asn 
65                  70                  75                  80  


Ser Leu Thr Val Ser Val Gln Thr Ile Gln Ser Ser Leu Gly Ser Leu 
                85                  90                  95      


Thr Glu Ser Met Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Ala Ser 
            100                 105                 110         


Ser Ile Thr Asn Leu Arg Ser Val Val Asp Gly Leu Thr Val Asp Val 
        115                 120                 125             


Ala Asn Leu Lys Arg Asp Met Ser Asn Gln Gly Leu Lys Val Thr Gly 
    130                 135                 140                 


Leu Glu Gln Arg Val Ala Asp Leu Glu Ser Gly Ala Gly Ser Leu Pro 
145                 150                 155                 160 


Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Val Val Ser Leu Asp 
                165                 170                 175     


Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Ser Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly 
    210                 215                 220                 


Gln Arg Thr Asp Tyr Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro 
                245                 250                 255     


Pro Ser Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Ile His Ser 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Val Phe Arg Ile Thr 
    290                 295                 300                 


Phe Ser Pro Gly Asn Pro Val Pro Ala Val Ile Arg Phe Ile Thr Gly 
305                 310                 315                 320 


Asp Glu 
        


<210>  28
<211>  957
<212>  DNA
<213>  Avian orthoreovirus isolate chicken 55259 segment 1 encoding the minor outer capsid protein sigma C


<220>
<221>  CDS
<222>  (1)..(957)

<400>  28
atg gaa ggc tta act cag tca cag cga aga gag gtc gtg ggg ctg ata       48
Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile         
1               5                   10                  15              

ctc tca ttg act tcg aac gtg act ata aat cct ggc gat ttg atg gaa       96
Leu Ser Leu Thr Ser Asn Val Thr Ile Asn Pro Gly Asp Leu Met Glu         
            20                  25                  30                  

ctg cgt gag cgc gtc tca gcg tta gaa tcg gtc act gcg tcg ttg aat      144
Leu Arg Glu Arg Val Ser Ala Leu Glu Ser Val Thr Ala Ser Leu Asn         
        35                  40                  45                      

ggg act ata aaa ggc gtg tta gac cag ctg gtg gat ttg gca cag aag      192
Gly Thr Ile Lys Gly Val Leu Asp Gln Leu Val Asp Leu Ala Gln Lys         
    50                  55                  60                          

tta ggt aat gcg gcg ggt gct gta gtt gac cta cga ggc gag ctg aac      240
Leu Gly Asn Ala Ala Gly Ala Val Val Asp Leu Arg Gly Glu Leu Asn         
65                  70                  75                  80          

tca tta act gcc agc gtt caa act gtc caa tcc tct ttg gaa tca ctc      288
Ser Leu Thr Ala Ser Val Gln Thr Val Gln Ser Ser Leu Glu Ser Leu         
                85                  90                  95              

acg gac agt atg tcg gat ctt tct ggc caa gtg act act aac acc tcg      336
Thr Asp Ser Met Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Thr Ser         
            100                 105                 110                 

tcg ctc acg aat ctg gag agt acg gtg gct ggt ctt aca gtc gat gta      384
Ser Leu Thr Asn Leu Glu Ser Thr Val Ala Gly Leu Thr Val Asp Val         
        115                 120                 125                     

act aat ctt aaa cgt gac gta tcg agt cag ggt ctt caa att acg agt      432
Thr Asn Leu Lys Arg Asp Val Ser Ser Gln Gly Leu Gln Ile Thr Ser         
    130                 135                 140                         

ctc gag cag cgt gta act agt ttg gaa tct ggc gct gga tct att ccc      480
Leu Glu Gln Arg Val Thr Ser Leu Glu Ser Gly Ala Gly Ser Ile Pro         
145                 150                 155                 160         

acg ttt gct gct ccc ctt aaa tta gat agc ggg att gta tca ctc gac      528
Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Ile Val Ser Leu Asp         
                165                 170                 175             

ttg gat cct tac ttt tgt tct gta gac cat aac ctc acg tcg tat tcc      576
Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser         
            180                 185                 190                 

gca agc gct ctg cta atg aat ttt cag tgg ctt gtt cga ggt gag gga      624
Ala Ser Ala Leu Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly         
        195                 200                 205                     

gga tcg tct gat tca ttc gat atg aat gtg aca gct cat agc cat ggt      672
Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly         
    210                 215                 220                         

cag agg aca gac ttt atg atg tct act acc cag tcg tta act gtt act      720
Gln Arg Thr Asp Phe Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr         
225                 230                 235                 240         

gga aat tct gtc act cta gtc ttt gat ctt aac gcg ctt att tct cca      768
Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro         
                245                 250                 255             

ccc cct gac tac tct cgc ttg ata ccc tgc cat ggt ttt caa caa gcg      816
Pro Pro Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala         
            260                 265                 270                 

acg ttc cca gtg gac ctt tcg ttc aag cga gac gac gtc acg cac tca      864
Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Thr His Ser         
        275                 280                 285                     

tat cag gtg tat ggt tcg tac acg act cct cgc att ttc aag ata acc      912
Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Ile Phe Lys Ile Thr         
    290                 295                 300                         

ttc tct cct ggc aat acc agt gcc tgc ggt cat acg ttt ata agc          957
Phe Ser Pro Gly Asn Thr Ser Ala Cys Gly His Thr Phe Ile Ser             
305                 310                 315                             


<210>  29
<211>  319
<212>  PRT
<213>  Avian orthoreovirus isolate chicken 55259 segment 1 encoding the minor outer capsid protein sigma C

<400>  29

Met Glu Gly Leu Thr Gln Ser Gln Arg Arg Glu Val Val Gly Leu Ile 
1               5                   10                  15      


Leu Ser Leu Thr Ser Asn Val Thr Ile Asn Pro Gly Asp Leu Met Glu 
            20                  25                  30          


Leu Arg Glu Arg Val Ser Ala Leu Glu Ser Val Thr Ala Ser Leu Asn 
        35                  40                  45              


Gly Thr Ile Lys Gly Val Leu Asp Gln Leu Val Asp Leu Ala Gln Lys 
    50                  55                  60                  


Leu Gly Asn Ala Ala Gly Ala Val Val Asp Leu Arg Gly Glu Leu Asn 
65                  70                  75                  80  


Ser Leu Thr Ala Ser Val Gln Thr Val Gln Ser Ser Leu Glu Ser Leu 
                85                  90                  95      


Thr Asp Ser Met Ser Asp Leu Ser Gly Gln Val Thr Thr Asn Thr Ser 
            100                 105                 110         


Ser Leu Thr Asn Leu Glu Ser Thr Val Ala Gly Leu Thr Val Asp Val 
        115                 120                 125             


Thr Asn Leu Lys Arg Asp Val Ser Ser Gln Gly Leu Gln Ile Thr Ser 
    130                 135                 140                 


Leu Glu Gln Arg Val Thr Ser Leu Glu Ser Gly Ala Gly Ser Ile Pro 
145                 150                 155                 160 


Thr Phe Ala Ala Pro Leu Lys Leu Asp Ser Gly Ile Val Ser Leu Asp 
                165                 170                 175     


Leu Asp Pro Tyr Phe Cys Ser Val Asp His Asn Leu Thr Ser Tyr Ser 
            180                 185                 190         


Ala Ser Ala Leu Leu Met Asn Phe Gln Trp Leu Val Arg Gly Glu Gly 
        195                 200                 205             


Gly Ser Ser Asp Ser Phe Asp Met Asn Val Thr Ala His Ser His Gly 
    210                 215                 220                 


Gln Arg Thr Asp Phe Met Met Ser Thr Thr Gln Ser Leu Thr Val Thr 
225                 230                 235                 240 


Gly Asn Ser Val Thr Leu Val Phe Asp Leu Asn Ala Leu Ile Ser Pro 
                245                 250                 255     


Pro Pro Asp Tyr Ser Arg Leu Ile Pro Cys His Gly Phe Gln Gln Ala 
            260                 265                 270         


Thr Phe Pro Val Asp Leu Ser Phe Lys Arg Asp Asp Val Thr His Ser 
        275                 280                 285             


Tyr Gln Val Tyr Gly Ser Tyr Thr Thr Pro Arg Ile Phe Lys Ile Thr 
    290                 295                 300                 


Phe Ser Pro Gly Asn Thr Ser Ala Cys Gly His Thr Phe Ile Ser 
305                 310                 315                 


<210>  30
<211>  20
<212>  DNA
<213>  Artificial Sequence 

<220>
<223>  Synthetic Primer

<400>  30
agtatttgtg agtacgattg                                                 20


<210>  31
<211>  17
<212>  DNA
<213>  Artificial Sequence 

<220>
<223>  Synthetic Primer

<400>  31
ggcgccacac cttaggt                                                    17


