Table 11.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with Endometriosis from the analysis of genome wide scan (GWS) data:
Stage 3 & 4. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#,
dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent
application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either
side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for statistical
significance from the GWS for single SNP markers (both T test and Permutation test p-values are
displayed; see Example section) and for the most highly associated multi-marker haplotypes centered
at the reference marker and defined by the sliding windows of specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   ldstatv4        ldstatv4   ldstatv4   ldstatv4   ldstatv4   singletype                         singletype                       
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        Single Marker   W03        W05        W07        W09        Single Genotype Likelihood Ratio   Single Allele Likelihood Ratio   
174         1     81904886       561278     4234     CTGATGTAAAMATGATAATCT   0.144           -          -          -          -          0.121           -          -          -          -          0.517                              0.144                            
174         1     81911328       627084     4235     TGCCTCATTTRATCAAGTGAC   1.008           0.526      -          -          -          0.964           0.498      -          -          -          1.155                              0.942                            
164, 174    1     81916833       493850     4236     TATTTTTGTTRTTCCTGGAAA   0.093           1.798      2.382      -          -          0.055           1.775      2.116      -          -          0.104                              0.093                            
164, 174    1     81918160       9661521    4237     TGGGAACCTCRTAAAATGGTT   2.651           1.885      1.875      3.290      -          2.535           1.896      1.764      2.713      -          2.113                              2.651                            
164, 174    1     81919788       10493701   4238     TTACTTATCARTTGGTTATTG   1.024           1.862      3.150      4.577      4.149      0.963           1.818      2.766      3.651      3.485      0.657                              1.024                            
164, 174    1     81919877       559728     4239     TTACACAGAGYTTTCCAAAAG   1.274           3.510      5.808      4.418      3.622      1.224           3.533      4.521      3.563      3.099      1.072                              1.249                            
164, 174    1     81920658       11163349   4240     CATTTGTTTARGAACTATCTT   4.747           4.671      5.656      4.546      -          4.616           5.208      4.364      3.773      -          4.439                              4.747                            
164, 174    1     81929270       645997     4241     AGAAGTTCCARTCAGCAGCAG   0.462           3.330      6.341      -          -          0.393           3.885      4.470      -          -          0.696                              0.462                            
164, 174    1     81935677       535873     4242     TTGATTGATTKTTGCCAATCT   0.605           0.537      -          -          -          0.541           0.594      -          -          -          0.539                              0.605                            
164, 174    1     81942285       485240     4243     GCTACCCCTTYCCCCTGCTCA   0.720           -          -          -          -          0.660           -          -          -          -          0.717                              0.720                            
165         1     83169134       1144269    4244     CTTTGAGCCCRCCTACTTCTG   0.524           -          -          -          -          0.470           -          -          -          -          0.781                              0.524                            
165         1     83185401       4662179    4245     AATTTAGACCKGTGAGTGAAA   0.597           0.439      -          -          -          0.508           0.447      -          -          -          0.364                              0.597                            
165         1     83209125       10493733   4246     AATTATTGTTYCGAATAGGTA   0.069           2.397      2.260      -          -          0.019           2.627      2.062      -          -          0.021                              0.069                            
165         1     83233769       1440445    4247     CCCCGTGTTAYAATTCCATTT   0.382           1.762      3.284      2.251      -          0.348           1.903      2.864      2.110      -          1.258                              0.393                            
165         1     83237313       7556305    4248     GTGACTAGATRGGCACACCTA   0.112           1.102      1.265      -          -          0.072           1.311      1.281      -          -          0.490                              0.112                            
165         1     83238413       6702898    4249     TAAATTATCAYGTGAGGACAG   0.053           0.982      -          -          -          0.032           1.115      -          -          -          0.345                              0.053                            
165         1     83247431       2184006    4250     TTTCAGATGAYCCCAAATGTG   0.552           -          -          -          -          0.506           -          -          -          -          0.230                              0.552                            
175         6     23512255       7775425    5052     GAAATCAATCYTGGAACCTGC   0.094           -          -          -          -          0.036           -          -          -          -          0.213                              0.094                            
175         6     23514367       11752213   5053     TTTGTAAATAYATTAGAATGG   0.421           2.633      -          -          -          0.373           2.924      -          -          -          0.179                              0.421                            
175         6     23516311       7758866    5054     ATAGGCTTTAKGTTTGAACCT   4.630           2.845      2.443      -          -          4.527           2.984      2.258      -          -          4.205                              4.630                            
175         6     23516653       913009     5055     CCCTTCTCCTYGTGGGTCTCA   0.473           2.854      -          -          -          0.408           3.158      -          -          -          0.407                              0.473                            
175         6     23516797       1079154    5056     TTGTCTGTGCYTAATAGTAAT   0.048           -          -          -          -          0.000           -          -          -          -          0.047                              0.048                            
166         6     152681941      2306915    5113     CATTTTAACTKCTTTGGCATT   0.137           -          -          -          -          0.074           -          -          -          -          0.037                              0.137                            
166         6     152685658      7776399    5114     TCTGAAGGGAYGCCTTCTTTG   2.105           3.147      -          -          -          2.007           3.302      -          -          -          1.527                              2.105                            
166         6     152690620      6557213    5115     AATGTTTTTCRAGAATGAAAA   4.063           3.627      2.864      -          -          3.936           3.777      2.556      -          -          3.416                              4.054                            
166         6     152695457      725235     5116     ATGTGCTTTCYTTTGTGAAGA   0.097           2.978      3.858      3.352      -          0.055           3.070      3.329      2.901      -          0.020                              0.097                            
166         6     152695853      959024     5117     AACAAACCAGRAAATGGTATA   0.131           0.510      4.242      5.782      5.710      0.059           0.548      3.588      4.939      4.824      0.135                              0.131                            
166         6     152702530      9371587    5118     TGTAGCCTACKCTGTCCTGCC   1.520           1.243      3.787      4.037      5.843      1.398           1.332      3.154      3.349      4.785      2.019                              1.520                            
166         6     152706954      4645434    5119     GAGGACTTGGMTCTAAATCCG   2.623           3.637      4.220      3.562      2.626      2.542           3.922      3.486      3.084      2.460      2.347                              2.623                            
166         6     152712868      4870099    5120     GATTCTCTCARTACAATCATT   1.061           4.052      4.768      3.162      2.233      0.957           4.851      3.871      2.848      2.132      0.452                              1.061                            
166         6     152715782      2029413    5121     TTTAAACTCTKTACAAGCACT   2.317           3.226      4.972      3.617      -          2.261           3.589      4.198      3.219      -          2.268                              2.408                            
166         6     152725106      4407724    5122     ACTGTCGAACKCCATCCTGAT   2.380           1.529      2.875      -          -          2.245           1.651      2.458      -          -          1.997                              2.380                            
166         6     152739399      214955     5123     GAAAAGGTGAYGCAAAAATTT   3.042           1.152      -          -          -          2.948           1.275      -          -          -          2.770                              3.042                            
166         6     152744514      214959     5124     TTGCTCCTGTRAATGATTAAA   1.398           -          -          -          -          1.359           -          -          -          -          1.109                              1.398                            
167         7     127482050      3757759    5207     CGTGACCTACMATCATTTCCC   1.083           -          -          -          -          0.986           -          -          -          -          0.707                              1.083                            
167         7     127492410      3808055    5208     AGTTAGATGCYGGTGAAAAAG   0.420           1.323      -          -          -          0.371           1.573      -          -          -          0.402                              0.420                            
167         7     127496211      322840     5209     GCAGGAGGACRCGTCCCACTG   1.230           1.447      1.066      -          -          1.151           1.526      1.027      -          -          0.832                              1.230                            
167         7     127503138      322832     5210     TCAGCTCCTAYAGGAAAGGAG   0.620           1.861      3.247      3.195      -          0.575           1.924      2.942      2.858      -          0.421                              0.620                            
167         7     127521058      17151739   5211     GCAGCGCCTCMGGCTTAGCCA   2.460           3.051      3.948      3.828      3.331      2.373           3.067      3.354      3.229      2.775      2.332                              2.460                            
167         7     127521248      6960004    5212     AGCAGAGAAGYACACTCTCAC   2.424           3.227      5.039      5.448      4.446      2.285           3.193      3.631      3.413      3.486      1.841                              2.424                            
167         7     127526902      6953698    5213     GTTTGGCTTCRCAATGCGTTT   1.097           3.065      5.345      5.240      4.439      1.024           3.555      3.478      3.747      3.328      0.809                              1.097                            
167         7     127532023      322812     5214     GATACAGTCAYCGGATTGCTC   0.212           0.903      5.356      4.453      4.643      0.171           1.196      3.762      3.467      3.414      0.456                              0.212                            
167         7     127542220      322786     5215     ACGGGGTTGTYGTGAAAAACA   0.248           0.322      0.812      4.750      3.784      0.215           0.300      0.861      3.432      2.951      0.423                              0.248                            
167         7     127555771      322768     5216     CTGATTTTCTMATAAATGTAT   0.368           0.191      0.307      0.466      3.286      0.328           0.192      0.329      0.483      2.760      0.770                              0.368                            
167         7     127559437      322763     5217     TTGGGTTCACKCTACAAAATA   0.279           0.247      0.119      3.931      4.412      0.210           0.204      0.119      2.889      3.325      0.039                              0.279                            
167         7     127560624      322760     5218     GTTTAACCTAYAACAGGTATA   0.457           0.338      3.824      3.196      -          0.420           0.329      2.946      2.773      -          0.820                              0.457                            
167         7     127565748      4731401    5219     CTGCAACTGCRGAACATAAAG   0.395           3.370      3.421      -          -          0.325           3.363      2.997      -          -          0.174                              0.395                            
167         7     127572617      322738     5220     GGGCAACCCCRTTTCCCCTGT   2.507           3.583      -          -          -          2.386           3.598      -          -          -          2.002                              2.507                            
167         7     127572870      322737     5221     TACTGAAAGARGCCAATATAA   1.057           -          -          -          -          1.017           -          -          -          -          0.780                              1.057                            
176         10    99757014       482787     5516     ATAGGTGTGGYCTTATTGTAA   0.540           -          -          -          -          0.478           -          -          -          -          1.368                              0.540                            
176         10    99762875       522110     5517     TTTTCAAGGGRTGACCTCTAT   0.179           0.158      -          -          -          0.158           0.137      -          -          -          0.225                              0.179                            
176         10    99775626       7922066    5518     CCTGGGACCCRTAAAATTTCT   0.603           3.566      2.917      -          -          0.522           4.059      2.673      -          -          0.345                              0.643                            
176         10    99789814       1867075    5519     TAAGGGCATTRGCACAGAGTA   4.504           2.615      2.840      1.927      -          4.382           3.078      2.524      1.827      -          3.833                              4.504                            
176         10    99805125       10786380   5520     AATGGCTGGTYTAGAGGATCC   0.824           2.697      2.268      -          -          0.756           3.180      2.039      -          -          0.483                              0.824                            
176         10    99827291       2225693    5521     AGAATCAGAAYGGGCAGAACA   0.824           0.235      -          -          -          0.769           0.199      -          -          -          0.546                              0.824                            
176         10    99836661       928578     5522     GGAAAGAGGAMACAGGAGTCA   0.663           -          -          -          -          0.602           -          -          -          -          0.636                              0.663                            
168         11    4869633        10836914   5535     ACTAAACTATRGCAAGATTGG   0.894           -          -          -          -          0.811           -          -          -          -          1.826                              0.894                            
168         11    4873665        2570574    5536     TTAATCTGGGKGAAGCTATGA   0.224           1.035      -          -          -          0.184           1.071      -          -          -          0.159                              0.224                            
168         11    4878592        4910693    5537     TCTCCTTCCARCAGCCTGGTC   1.677           1.850      3.033      -          -          1.544           1.859      2.642      -          -          1.270                              1.677                            
168         11    4882509        10500632   5538     TGACTTTACCRCTTAAAATAT   2.274           2.958      4.049      3.033      -          2.150           3.243      3.195      2.611      -          1.767                              2.274                            
168         11    4882769        10742412   5539     GTAGGGTAGGKTTACATGAAA   4.334           3.242      4.274      4.135      3.149      4.235           3.582      3.216      3.092      2.516      3.823                              4.334                            
168         11    4883261        10500629   5540     ACAAAATACARTATGAATTCA   4.159           3.242      5.721      4.286      3.246      3.993           3.623      3.546      3.091      2.581      3.755                              4.266                            
168         11    4885197        11034596   5541     CAATAACTCCRAAGTCAAGCT   1.876           3.022      5.387      3.365      3.010      1.707           3.347      3.628      2.813      2.515      2.503                              1.876                            
168         11    4885417        7108225    5542     CTTCCTACCAYGTTGAGGGTC   2.403           3.077      3.494      4.366      3.996      2.272           3.578      2.903      3.584      3.315      1.902                              2.403                            
168         11    4885442        7941509    5543     TGTTCAATGCYATGGGAATTT   3.921           2.820      3.795      3.471      3.254      3.802           2.872      3.286      3.003      2.830      3.905                              3.921                            
168         11    4892046        7112101    5544     TACATGGGCCYTCTCCACGTC   0.889           3.118      3.041      2.501      2.622      0.814           3.446      2.678      2.304      2.274      0.631                              0.889                            
168         11    4893714        919900     5545     AGTGATGAGCYAAACTGGGTG   0.555           0.415      3.405      2.726      -          0.478           0.408      2.936      2.387      -          0.403                              0.555                            
168         11    4894928        2570580    5546     ATTTAGAACAYGCCCCAGTAC   0.201           1.479      1.963      -          -          0.134           1.493      1.786      -          -          0.063                              0.201                            
168         11    4898480        1433897    5547     TGTTGTGTGCRGTTCTGTCAA   0.470           0.375      -          -          -          0.449           0.380      -          -          -          0.534                              0.472                            
168         11    4901562        12796015   5548     GTGATTGACARTGATGCTAGA   1.129           -          -          -          -          1.027           -          -          -          -          0.761                              1.129                            
169         11    17023194       7930058    5560     AAAGAAGGTAYACCAATGGCC   0.216           -          -          -          -          0.174           -          -          -          -          0.512                              0.216                            
169         11    17041768       7949405    5561     GGGGACCTCTMCTCTAGGGCC   0.901           1.141      -          -          -          0.842           1.120      -          -          -          0.732                              0.901                            
169         11    17042743       17472886   5562     AAATACAGATRTCTGGTTCCC   0.216           1.462      4.894      -          -          0.181           1.473      4.100      -          -          0.512                              0.216                            
169         11    17075263       11604561   5563     AAGGAGTATGYTTTAGGTGAA   2.306           3.643      3.930      3.930      -          2.204           3.850      3.524      3.505      -          1.928                              2.306                            
169         11    17104753       2040859    5564     AGTGTAATAAYAATAATCATC   5.045           4.020      3.751      3.299      3.544      4.975           4.029      3.333      3.048      3.186      4.944                              5.142                            
169         11    17132633       7946010    5565     CCACACTGAARACAATGCTGG   0.470           4.260      3.973      3.432      3.688      0.403           4.443      3.542      3.109      3.283      0.294                              0.470                            
169         11    17160341       621246     5566     ACCCAAGTATKTATTTATAAT   0.296           0.310      4.921      4.561      3.574      0.236           0.258      4.100      3.855      3.181      0.398                              0.296                            
169         11    17204284       7949699    5567     CACAAACTTTRGCTCTCATTT   0.258           4.002      5.317      4.263      3.568      0.255           4.757      4.336      3.713      3.041      0.243                              0.258                            
169         11    17216692       12577525   5568     TGATCATAATRATGAGGTTGA   2.839           3.995      5.777      4.324      2.629      2.761           4.049      4.480      3.631      2.439      2.706                              2.839                            
169         11    17223605       1488933    5569     ATGGCAGATAYTCATATTCCA   0.711           3.394      3.951      3.684      4.488      0.682           3.430      3.420      3.357      4.051      0.470                              0.711                            
169         11    17242259       10832753   5570     AATACCTGTGYAGGAAAAGGG   2.677           3.440      3.500      3.978      3.842      2.528           3.822      3.171      3.578      3.454      3.018                              2.677                            
169         11    17248075       214097     5571     CACAACTATAKGAAGCTTGAA   0.396           1.796      4.098      3.827      4.011      0.359           1.980      3.646      3.513      3.484      0.139                              0.366                            
169         11    17270097       214105     5572     TACAAGTCATRTAACTTAATC   1.369           1.389      4.553      3.712      2.714      1.253           1.579      3.942      3.291      2.530      1.015                              1.447                            
169         11    17272605       1330       5573     AAAAAATTGGYATAAAGATAG   1.097           0.603      2.718      3.702      2.642      1.042           0.605      2.398      3.335      2.470      0.848                              1.088                            
169         11    17277373       10741725   5574     AAAACATATTKCTGTTTCCTA   0.767           2.862      2.942      1.478      2.519      0.759           3.225      2.644      1.389      2.394      0.462                              0.767                            
169         11    17286374       10766383   5575     TTCTTAAGGGKCAACTATATT   1.306           2.616      2.300      2.429      -          1.223           2.876      2.167      2.298      -          0.989                              1.306                            
169         11    17327277       2354867    5576     CTAACATGTGYACTCACATAC   0.966           1.413      1.930      -          -          0.906           1.545      1.816      -          -          0.536                              0.906                            
169         11    17350220       12791318   5577     AAGAAAGAGCRCCTCATATTC   1.609           0.953      -          -          -          1.523           0.916      -          -          -          1.131                              1.543                            
169         11    17351173       4756887    5578     TGTCTCCTGTKAGGTATGTTT   0.846           -          -          -          -          0.792           -          -          -          -          0.623                              0.846                            
170         11    123499218      880321     5651     AAGAGTCGATYGACAGGGCCC   0.254           -          -          -          -          0.197           -          -          -          -          0.288                              0.254                            
170         11    123512203      2276053    5652     CTGACCGGGARGATGCCAGTG   2.065           1.372      -          -          -          1.961           1.624      -          -          -          1.503                              2.065                            
170         11    123516790      7103676    5653     CAGGCATGAAYCTCTGTGCCC   2.200           1.601      1.995      -          -          2.054           1.845      1.843      -          -          1.593                              2.200                            
170         11    123517032      10502275   5654     AGATACTTTARTGAATGATCG   0.416           2.407      4.775      5.235      -          0.314           2.612      3.815      4.556      -          0.405                              0.416                            
170         11    123517841      2276051    5655     CTTACCATGCRGATGAGGCAG   0.253           3.610      6.561      6.441      4.919      0.199           3.966      5.602      5.409      4.236      0.621                              0.253                            
170         11    123522301      1939861    5656     GGTAAGCTTGYGTAGGAGGAG   1.991           4.229      6.528      5.167      5.147      1.893           4.701      5.569      4.521      4.447      1.564                              1.991                            
170         11    123537557      1939852    5657     ACTAGAACGTMCCATCATTAA   0.626           1.119      3.843      4.390      3.581      0.530           1.172      3.469      3.944      3.169      0.320                              0.626                            
170         11    123538105      2508885    5658     TCTGTGTTCTRTAATCTAAGG   0.667           0.735      0.876      3.202      3.498      0.567           0.722      0.844      2.900      3.145      0.331                              0.667                            
170         11    123545494      2512255    5659     CAAATTATAGRTAGATATAAA   1.520           1.050      0.915      0.731      2.813      1.453           1.073      0.933      0.738      2.621      1.027                              1.520                            
170         11    123552785      2508876    5660     AGCATCACCTRCACTGGGACC   1.520           1.542      0.950      0.753      0.731      1.430           1.547      0.924      0.746      0.738      1.027                              1.520                            
170         11    123560412      2724661    5661     GATGTCCAAAYGAAAAACATG   2.086           1.216      1.266      0.950      1.617      1.974           1.219      1.219      0.922      1.504      2.104                              2.086                            
170         11    123561776      7937809    5662     TTAGCCCAGARGGTGAGCTTC   0.676           1.216      1.266      2.408      1.925      0.630           1.219      1.219      1.995      1.739      0.558                              0.676                            
170         11    123561791      2466584    5663     AGCTTCACCARCGTTGGCCTC   0.724           1.080      2.408      2.408      2.316      0.663           1.093      2.013      2.013      1.904      0.467                              0.724                            
170         11    123561997      2512226    5664     GCTGGGAACCRTGGTACAAAT   1.520           1.845      2.310      2.316      2.250      1.457           1.957      1.957      1.862      1.883      1.027                              1.520                            
170         11    123577441      2724664    5665     GTCATTCTGTRAGTAAAAAAC   0.463           1.590      2.316      2.250      2.250      0.416           1.587      1.898      1.855      1.929      0.988                              0.463                            
170         11    123590672      948071     5666     TGACAAGATCRTGGACCCTGG   1.991           2.259      2.002      2.250      2.250      1.898           2.303      1.745      1.862      1.862      1.946                              1.991                            
170         11    123605456      2466605    5667     TACAGTAACAYGAGAGGTTTT   0.888           1.133      2.098      2.002      -          0.823           1.123      1.916      1.752      -          1.176                              0.958                            
170         11    123615652      2466650    5668     TTGAGACACARATTAGAAGAA   0.118           0.520      1.169      -          -          0.079           0.516      1.082      -          -          0.026                              0.118                            
170         11    123640648      2512167    5669     ATCTTTAGTGRAATTAACATC   0.888           0.520      -          -          -          0.868           0.551      -          -          -          1.077                              0.888                            
170         11    123653176      2466629    5670     CTAATTCTCCRGGGGCTGTGA   0.118           -          -          -          -          0.088           -          -          -          -          0.026                              0.118                            
177         12    27590018       306664     5684     AAATTGGTGTRCTGTTTAAAG   0.667           -          -          -          -          0.595           -          -          -          -          0.307                              0.667                            
177         12    27590587       306665     5685     AAATAATAGTRTGATTTTTGA   0.060           2.062      -          -          -          0.024           2.086      -          -          -          0.110                              0.078                            
177         12    27592240       100877     5686     GCAAAACTGARGGAAGAGATT   2.195           2.247      2.000      -          -          2.081           2.281      1.819      -          -          1.424                              2.195                            
177         12    27594746       899069     5687     TATGTTATTCRTGCTTTATGA   0.212           1.798      2.011      1.780      -          0.163           2.013      1.824      1.617      -          0.091                              0.213                            
177         12    27601182       10506022   5688     AAATCTTGAAMTAGGTCTTAC   1.710           1.880      2.209      1.895      1.778      1.586           2.093      2.059      1.741      1.672      1.951                              1.710                            
177         12    27609684       10506023   5689     TCACCTCACCRTATTTCTCTA   2.524           2.197      2.260      2.105      1.299      2.420           2.177      1.844      1.900      1.244      1.804                              2.524                            
177         12    27609825       10506024   5690     TAAGCACATARCTAATGACTC   0.976           2.144      2.258      1.365      3.299      0.917           2.330      1.927      1.292      2.891      0.530                              0.976                            
177         12    27617467       9300175    5691     ATTAAATACCYGAATGAATGG   2.871           2.110      1.199      2.707      2.813      2.767           2.123      1.168      2.284      2.391      2.222                              2.871                            
177         12    27617637       10506025   5692     AGGTTTTGATRTTGGTAGTAG   2.222           1.452      3.153      2.712      2.676      2.150           1.482      2.654      2.384      2.379      1.635                              2.222                            
177         12    27619281       4931150    5693     AAGTAGCAGGYTTTTTAGACC   0.257           3.178      2.681      2.818      2.523      0.196           3.555      2.346      2.500      2.214      0.307                              0.257                            
177         12    27620211       10506026   5694     ATTCAGTCCTKGTTAGGCCAA   4.667           2.996      3.246      3.112      3.419      4.561           3.309      2.862      2.676      2.954      4.010                              4.667                            
177         12    27622486       4402334    5695     ACTCTCTAAARCCTGCAATTT   3.056           3.266      3.775      2.909      2.686      2.911           3.638      3.036      2.546      2.310      2.868                              3.056                            
177         12    27627253       1975920    5696     AGATATTTTTKAGGAAAAGGT   0.457           2.615      4.643      3.126      2.136      0.394           3.009      3.498      2.681      1.943      0.264                              0.457                            
177         12    27629871       10771349   5697     CACTAACTACRGGTAAAAGTG   0.612           0.337      2.160      2.541      -          0.566           0.320      1.981      2.240      -          0.323                              0.612                            
177         12    27637547       10492371   5698     TAAGATTCTGYGGTTCAACCC   0.000           1.312      1.431      -          -          0.000           1.439      1.443      -          -          0.171                              0.050                            
177         12    27637748       3751226    5699     GGAGCTGCCGKACAGCTGGAA   1.851           1.051      -          -          -          1.744           1.151      -          -          -          1.383                              1.851                            
177         12    27638020       3751229    5700     TGAATTTGGTMTTGTCTCTTC   0.146           -          -          -          -          0.134           -          -          -          -          0.170                              0.146                            
178         13    73330323       9565053    5812     AGAAAGAAATYTAAAAGGGGA   0.686           -          -          -          -          0.596           -          -          -          -          0.363                              0.686                            
178         13    73331360       7139811    5813     GGGTAGGGAGRGCTTCTAAGG   0.773           1.856      -          -          -          0.692           2.054      -          -          -          0.401                              0.773                            
178         13    73344906       4885124    5814     AGGCTCATACRTGTTGTATGT   2.203           1.700      1.698      -          -          2.121           1.836      1.566      -          -          1.712                              2.203                            
178         13    73347180       9573320    5815     GTCATCTTAGRTTTTCATATA   1.001           2.522      2.954      1.655      -          0.917           3.048      2.436      1.541      -          0.622                              1.001                            
178         13    73355690       9573322    5816     CTGACCTGAAMCTGATTTCAG   1.391           1.265      3.904      2.877      2.002      1.268           1.488      2.911      2.572      1.845      0.984                              1.391                            
178         13    73357949       17061640   5817     CAGAAGTTAGRGAAACCATTT   1.949           1.588      3.747      2.741      1.312      1.783           1.967      2.927      2.373      1.267      2.096                              1.949                            
178         13    73358339       17061643   5818     ATGTATCCTCRATGGGAAATG   1.080           3.241      3.558      2.104      2.243      0.975           3.764      2.772      1.965      2.052      1.739                              1.080                            
178         13    73360547       8002473    5819     TAAGACTGTGYTTTGATTATG   4.698           3.229      3.165      2.569      1.236      4.588           3.533      2.759      2.328      1.218      3.900                              4.698                            
178         13    73363485       2148746    5820     CAGATAAAAAYTCCACTTGTT   0.230           3.465      3.176      3.099      1.995      0.188           3.671      2.871      2.884      1.917      0.138                              0.332                            
178         13    73372852       8000776    5821     AGAAAGTGAAYTCATTCTGCT   2.732           1.715      3.116      2.373      1.894      2.599           1.760      2.839      2.251      1.783      2.296                              2.732                            
178         13    73383312       9573326    5822     TCTATACTGTRTGCACATCAG   2.037           1.990      1.884      2.198      1.772      1.919           1.987      1.784      2.113      1.684      1.550                              2.037                            
178         13    73389266       9318225    5823     ATGGATTATAYACCAAGTGTC   2.299           1.769      2.237      0.830      -          2.207           1.965      2.081      0.825      -          1.645                              2.299                            
178         13    73389458       12856248   5824     TCTGCCTAGARTGATTCCTCT   0.036           1.402      1.281      -          -          0.000           1.415      1.285      -          -          0.033                              0.036                            
178         13    73391003       1887346    5825     AATGTTGCTCRGTTTACTCTT   0.493           0.130      -          -          -          0.421           0.122      -          -          -          0.793                              0.493                            
178         13    73391987       9318226    5826     GGAGATTATAYCCTTAGATTC   0.146           -          -          -          -          0.110           -          -          -          -          0.381                              0.146                            
171         15    23928868       693798     5916     ACACCATGCTRTCCCGTGGTG   1.384           -          -          -          -          1.221           -          -          -          -          0.810                              1.263                            
171         15    23929825       11632360   5917     ATTATAAAACMATAATAAATG   1.488           1.295      -          -          -          1.390           1.345      -          -          -          1.652                              1.488                            
171         15    23942258       4906864    5918     CTCTTTGGCAYCTTGCAAATA   0.491           2.128      3.193      -          -          0.438           2.178      2.882      -          -          0.656                              0.491                            
171         15    23956205       6576533    5919     TGAGGAAAAGYTTCATGGAAG   0.112           0.261      2.373      5.454      -          0.081           0.222      2.197      4.767      -          0.453                              0.112                            
171         15    23964069       1435835    5920     GTTGTGACATRAATGCGGGGA   0.502           0.393      0.251      -          -          0.427           0.369      0.261      -          -          0.444                              0.502                            
171         15    23967136       487586     5921     CTATCTCTGARTGTTTTACAT   0.026           0.177      -          -          -          0.000           0.195      -          -          -          0.393                              0.026                            
171         15    23968687       1282810    5922     GTCAGGTCACMGTGTTCCTAT   0.026           -          -          -          -          0.000           -          -          -          -          0.023                              0.026                            
179         16    75680433       10514408   5992     GGAGAGTTCAYTTGGAGAAAC   0.404           -          -          -          -          0.351           -          -          -          -          0.165                              0.404                            
179         16    75680718       964282     5993     TGACTTTTTCRAGACATGATA   1.424           3.086      -          -          -          1.327           3.511      -          -          -          2.716                              1.424                            
179         16    75682603       9929566    5994     ATTGTTGCAAYTGGGACAGGA   0.660           3.233      2.522      -          -          0.633           3.688      2.271      -          -          1.602                              0.660                            
179         16    75687840       7404856    5995     ACTTTTGCACMAACCTAATAC   1.536           2.322      2.820      3.789      -          1.431           2.481      2.500      3.246      -          1.243                              1.536                            
179         16    75690592       284987     5996     ATACTGCTAAYGGGAACCAGT   1.848           2.372      4.305      3.666      3.755      1.779           2.658      3.648      3.084      3.186      1.505                              1.848                            
179         16    75691782       6564386    5997     ATCTTCATCCYATGCATTATT   2.020           3.941      4.717      3.766      3.414      1.961           4.173      3.929      3.301      2.999      1.814                              2.020                            
179         16    75695421       7500253    5998     TGAAGAGATGYTCGCTCTGAT   1.859           3.641      5.742      4.643      3.614      1.778           3.697      4.688      4.003      3.147      1.867                              1.859                            
179         16    75697639       11643521   5999     CAAGGAAACARGATGTGTAAA   0.576           4.027      3.827      4.819      3.129      0.492           4.162      3.313      4.033      2.796      0.333                              0.576                            
179         16    75701124       12600205   6000     AAATATAAAAMGCTCATGGAA   4.752           4.436      3.977      2.727      -          4.652           4.519      3.311      2.429      -          4.008                              4.991                            
179         16    75706421       284976     6001     TCCCTTTGCTRGAAACACACA   0.952           4.007      3.651      -          -          0.872           4.281      3.152      -          -          1.355                              0.952                            
179         16    75706979       6564392    6002     GCTTTCATGAYTCCTTTGCTT   0.786           0.457      -          -          -          0.731           0.488      -          -          -          0.407                              0.786                            
179         16    75718127       8056764    6003     TTACTTCCAAYATAAAAGCCC   0.082           -          -          -          -          0.060           -          -          -          -          0.027                              0.082                            
172         18    60764163       6566147    6214     GACCACAGCARCAGTTATAGC   0.061           -          -          -          -          0.032           -          -          -          -          0.702                              0.077                            
172         18    60773086       17758356   6215     TTTTCCCAATRTACTATTAAG   0.797           0.430      -          -          -          0.687           0.432      -          -          -          0.698                              0.797                            
172         18    60829171       17758948   6216     TTGTCTGGCAMCTGCACAAAA   0.519           0.277      0.134      -          -          0.428           0.254      0.126      -          -          1.213                              0.519                            
172         18    60843814       12963466   6217     CTGGAATAGARTTTTCTCCTT   0.212           0.109      1.113      2.723      -          0.181           0.101      1.101      2.471      -          0.872                              0.290                            
172         18    60846163       4488562    6218     TCTTTCAGCARCCTCCTGAAT   0.119           1.460      3.178      2.519      3.932      0.071           1.580      2.856      2.349      3.553      0.019                              0.119                            
172         18    60846963       12960630   6219     ATTCAAACTCMATAAAAGCAA   2.309           2.082      4.792      4.323      3.048      2.219           2.299      4.122      3.727      2.839      1.825                              2.309                            
172         18    60860235       11662184   6220     GAACTCCCTCRATAAAACTCT   1.056           2.216      2.972      5.510      5.476      1.014           2.440      2.516      4.656      4.484      0.918                              1.056                            
172         18    60868959       1642571    6221     CATTCTTGGGRCAGAAGGAGT   1.145           1.644      2.405      3.496      -          1.026           1.811      2.214      3.090      -          1.812                              1.056                            
172         18    60871166       17175096   6222     ATAGTAACCCYATAAGAAGGC   2.295           1.596      1.803      -          -          2.214           1.699      1.715      -          -          1.777                              2.295                            
172         18    60899889       611411     6223     CATTTAAAGAYTGCAATGGCT   0.972           1.526      -          -          -          0.926           1.820      -          -          -          0.658                              0.972                            
172         18    60900483       598526     6224     ATGTTAATGTYTGCCTAGAAA   0.908           -          -          -          -          0.885           -          -          -          -          0.589                              0.908                            
180         18    69629703       7226689    6225     GCATGAAAACYGCAGAAGGGT   0.327           -          -          -          -          0.302           -          -          -          -          0.355                              0.327                            
180         18    69629831       4892142    6226     TCCACTCAGAMCTTAGTGAAT   1.191           1.085      -          -          -          1.119           1.066      -          -          -          0.722                              1.112                            
180         18    69630052       1367344    6227     GTGTGGAGGAYGAGGGGAGTT   0.837           1.969      1.697      -          -          0.754           2.194      1.603      -          -          0.720                              0.939                            
180         18    69637596       2344173    6228     TGAGAATTCAYTCATGAACCC   1.853           2.363      3.786      1.085      -          1.709           2.744      3.215      1.053      -          1.588                              1.890                            
180         18    69638805       17088372   6229     TGATCCAACCMCATAGGCTAT   1.338           3.296      2.385      2.004      -          1.288           3.463      2.080      1.913      -          0.913                              1.338                            
180         18    69643743       17188412   6230     AAAGGAAATAYAGCAGAGCAT   4.782           2.909      4.232      -          -          4.633           3.123      3.529      -          -          4.521                              4.742                            
180         18    69645111       10514090   6231     TGCTATGATGKTCTTTTAAAA   0.204           2.775      -          -          -          0.162           3.235      -          -          -          0.222                              0.204                            
180         18    69645472       10514091   6232     TTTCTTCACTRAAAATTAGGC   0.175           -          -          -          -          0.131           -          -          -          -          0.051                              0.175                            
181         19    36670548       8113581    6265     CAGGGTATATRCTGGTGAACA   0.177           -          -          -          -          0.142           -          -          -          -          0.593                              0.177                            
181         19    36707544       11084588   6266     TTTTAGGGGCRGAAATGATAA   0.891           2.922      -          -          -          0.833           3.137      -          -          -          0.658                              0.900                            
181         19    36710123       12976546   6267     GACAGATTCARGAGAGAGAGA   1.126           3.485      2.862      -          -          1.069           4.117      2.527      -          -          0.734                              1.126                            
181         19    36713839       717680     6268     CCGCAGATGGRGCTTGAGTCC   4.697           3.074      5.045      3.398      -          4.578           3.126      4.306      2.995      -          4.420                              4.697                            
181         19    36728531       2194198    6269     CTTCCTAGATRTCTGAGCACC   0.026           3.746      3.835      2.808      1.479      0.000           3.952      3.307      2.514      1.434      0.744                              0.026                            
181         19    36745585       929812     6270     TCAATCTTCAYGTCTGGAGTA   1.515           0.765      3.515      3.495      -          1.443           0.838      2.927      3.219      -          1.292                              1.515                            
181         19    36751984       17499846   6271     TCCCTTTCCAYAGAAGCTGGA   1.628           0.510      0.855      -          -          1.560           0.531      0.850      -          -          1.067                              1.628                            
181         19    36796819       11084596   6272     AGAAGAGGAAYAGCTGGAACT   1.244           0.646      -          -          -          1.174           0.645      -          -          -          0.912                              1.244                            
181         19    36843292       745868     6273     TGGGGCTGGGRGAGCAGAGAC   1.007           -          -          -          -          0.954           -          -          -          -          0.602                              1.007                            
173         21    46413527       2839128    6378     TGGACAGGGCYTGTTTCCATG   0.109           -          -          -          -          0.073           -          -          -          -          0.075                              0.109                            
173         21    46429763       12482934   6379     CCTTCTTAAAYGTCGGATAGA   2.352           2.043      -          -          -          2.209           2.132      -          -          -          1.931                              2.352                            
173         21    46434105       914247     6380     AAGAGCAGATRAGGAGGTATA   2.094           2.231      2.295      -          -          2.041           2.418      2.096      -          -          1.446                              2.094                            
173         21    46438897       2254524    6381     GCACTCTGCAMATAACGCCGC   1.829           1.730      2.699      2.620      -          1.734           2.116      2.368      2.329      -          1.254                              1.829                            
173         21    46444212       4819214    6382     TGGTGGGCACRTGCATCACAC   2.200           1.581      2.934      3.303      2.759      2.110           1.639      2.494      2.895      2.531      1.517                              2.200                            
173         21    46449972       2075906    6383     ATTTTTGTATYATAACTGTGC   0.502           2.497      2.464      2.480      3.831      0.432           2.539      2.306      2.202      3.384      0.578                              0.502                            
173         21    46457423       2839151    6384     CCAAGTCAGGYGCAAGGAGAA   1.233           1.095      2.464      2.906      2.911      1.127           1.354      2.120      2.513      2.450      0.557                              1.233                            
173         21    46464420       2839155    6385     GAGTAGCTCCRGCACGCTGGC   0.770           1.334      1.966      2.949      2.906      0.704           1.614      1.784      2.505      2.513      0.932                              0.770                            
173         21    46465624       2839156    6386     CCCAGAAGGTRGACATATTAA   0.508           0.291      2.386      2.074      3.919      0.442           0.276      2.160      1.942      3.374      0.585                              0.508                            
173         21    46466222       2839158    6387     GTTCCGGGCTYGTACCAGGTC   0.278           0.291      0.270      3.528      3.463      0.231           0.291      0.284      3.092      3.035      1.251                              0.278                            
173         21    46466444       2280958    6388     ACATAACATGYCAACACAGGA   0.770           0.409      3.278      3.640      3.352      0.715           0.405      2.853      2.971      2.822      0.932                              0.770                            
173         21    46466700       2280957    6389     TTTTCTTCTGYCTTAAGTGAT   0.770           2.178      3.497      3.252      3.341      0.749           2.408      3.016      2.876      2.967      0.932                              0.770                            
173         21    46474790       2298694    6390     CACACTCCACYCTATCTGTTC   3.068           2.038      2.702      3.275      4.180      2.917           2.286      2.475      2.995      3.624      2.449                              2.956                            
173         21    46476371       2839159    6391     GGAAGTCTCCMGTAGTTGAAT   0.215           2.435      2.827      3.634      4.089      0.151           2.404      2.617      3.258      3.716      0.060                              0.215                            
173         21    46476613       2839160    6392     TACCCATTGAYAGTTTCCAAC   2.117           2.054      3.420      4.089      3.581      1.975           2.194      2.975      3.689      3.255      1.672                              2.117                            
173         21    46486043       2839168    6393     TGATGAATTTYAGAACTTACC   1.225           2.090      4.283      3.744      3.581      1.156           2.236      3.771      3.384      3.304      0.790                              1.225                            
173         21    46490760       2839169    6394     TAAGACAGACRTAGATGAAGG   0.739           1.793      3.744      3.744      4.042      0.656           1.864      3.412      3.414      3.599      1.770                              0.739                            
173         21    46503202       2839178    6395     TACAGAAACTRATAGCTCATA   0.921           1.885      1.933      4.042      4.805      0.867           1.882      1.753      3.580      4.103      1.172                              0.921                            
173         21    46505469       2839179    6396     GCTCCATCCAYCCCCTGGGCT   0.359           0.670      1.502      2.582      4.977      0.317           0.660      1.447      2.308      4.280      0.183                              0.359                            
173         21    46510580       2839182    6397     AGTGCCCTGCYGAGTACTGCA   0.438           0.519      0.339      5.543      4.905      0.379           0.509      0.339      4.553      4.160      0.502                              0.438                            
173         21    46514496       2839186    6398     TATGTTTTCCYAAAGAGATTT   1.224           0.577      3.474      2.935      6.109      1.136           0.573      2.980      2.541      5.149      1.458                              1.224                            
173         21    46517226       2839188    6399     AAGAGGCAACYGTGAGAAGGA   0.269           1.025      1.513      5.036      4.241      0.220           1.190      1.441      4.358      3.621      0.578                              0.269                            
173         21    46522771       2839193    6400     TAAACTGCTCRTCACAAAACG   2.043           1.320      4.566      3.205      3.286      1.955           1.454      3.825      2.834      2.930      1.503                              2.043                            
173         21    46524926       4438580    6401     GCCTGGAAAAYAGTCCACAAC   1.526           5.157      4.369      2.920      2.324      1.410           5.420      3.720      2.668      2.171      0.773                              1.526                            
173         21    46540022       2839201    6402     CCCCAAAGCTYTACCCAGAGT   4.816           3.313      4.604      3.161      2.482      4.697           3.341      3.928      2.809      2.290      3.742                              4.816                            
173         21    46543361       914249     6403     ACACACCGTGYCCGGCCCAAT   0.515           2.637      2.600      3.975      2.626      0.475           3.032      2.354      3.409      2.375      0.424                              0.515                            
173         21    46586802       9980536    6404     ACCAGCAGTGYAAAGGTTTTC   1.950           2.634      2.902      2.062      -          1.827           2.647      2.494      1.932      -          1.298                              1.950                            
173         21    46588905       11701361   6405     AGTTCCCCAGYTGGGGCAGAA   2.270           1.588      2.613      -          -          2.141           1.738      2.284      -          -          1.671                              2.270                            
173         21    46597605       2249060    6406     GAAGACCTAAYCCTGTTACAG   0.897           1.221      -          -          -          0.771           1.335      -          -          -          0.514                              0.897                            
173         21    46610952       2839227    6407     TAAAGAGATCRCCGAGAAATT   0.650           -          -          -          -          0.565           -          -          -          -          0.412                              0.650                            
182         22    31317955       739104     6433     CCATTATCACRGAATGTTCAA   0.242           -          -          -          -          0.170           -          -          -          -          0.254                              0.242                            
182         22    31318254       1009401    6434     ACCCCCTCACYGTCCCCAGGT   0.615           0.146      -          -          -          0.535           0.127      -          -          -          0.837                              0.597                            
182         22    31325281       2858729    6435     AAATAAAACAYTGCTTAGACA   0.588           0.825      0.432      -          -          0.529           0.899      0.410      -          -          0.764                              0.588                            
182         22    31329830       2710359    6436     TCACATGCCCYGGGCACTCCA   0.862           0.292      0.982      3.396      -          0.785           0.276      0.982      3.059      -          0.735                              0.862                            
182         22    31330069       7364201    6437     CTCAATCCACRGAGTCAGAGA   0.218           1.496      2.233      2.039      1.718      0.167           1.694      2.004      1.939      1.714      0.060                              0.218                            
182         22    31331177       4820084    6438     ACGAAGTCTCMCACAACAAGC   2.415           2.687      3.630      1.949      1.587      2.218           3.050      3.200      1.862      1.526      2.587                              2.415                            
182         22    31333307       762968     6439     GCTGCAGAACYTGCAACTCAA   3.505           3.574      2.682      3.443      2.187      3.383           3.848      2.428      3.103      2.106      2.824                              3.505                            
182         22    31340757       2858226    6440     GAGGTTCAAGYTTGTCAAATG   3.261           3.390      4.337      2.845      3.371      3.134           3.644      3.598      2.631      3.099      2.844                              3.261                            
182         22    31343062       9621508    6441     GAGATTCCTCMATGGTCTCTC   1.138           3.403      3.463      3.719      2.578      1.059           3.754      3.121      3.216      2.396      1.185                              1.138                            
182         22    31347869       9609603    6442     GCAGGCCTCCYGACTCAGATC   0.742           3.653      3.932      3.201      3.602      0.692           4.091      3.287      2.854      3.190      0.851                              0.742                            
182         22    31349789       2858223    6443     AGAGGGGACTKGGGTCCAGGG   4.889           3.427      4.039      2.898      4.344      4.770           3.443      3.386      2.582      3.729      4.137                              4.889                            
182         22    31351647       3788467    6444     TGGTTGACCAYCTGGCTGTGA   0.524           3.873      2.941      3.974      3.875      0.445           3.935      2.692      3.421      3.225      0.262                              0.524                            
182         22    31355155       2051568    6445     GGATTTGAGCRTGGGATCTGG   2.725           3.901      4.568      4.096      4.057      2.619           3.886      3.946      3.533      3.355      2.199                              2.788                            
182         22    31355180       2051569    6446     GTGATAGCAAMAGAGCAGCCC   3.505           2.659      4.714      4.011      4.228      3.369           2.722      3.845      3.522      3.655      3.271                              3.505                            
182         22    31361176       8137407    6447     GGGTGGTATGYCTGTAGGCTA   0.430           2.334      2.664      4.434      -          0.346           2.500      2.393      3.868      -          1.255                              0.430                            
182         22    31363048       9619283    6448     AGAAATGACARCAACAACAAC   0.879           0.802      2.649      -          -          0.817           0.781      2.448      -          -          0.660                              0.879                            
182         22    31367195       9609608    6449     TGACTTGTGAYCTGAACCGTG   0.237           0.635      -          -          -          0.158           0.645      -          -          -          0.249                              0.237                            
182         22    31371767       1547412    6450     TAGGAGACAAYAGATTTGGGA   0.570           -          -          -          -          0.541           -          -          -          -          0.361                              0.538                            
