Table 14.1. Genome wide association study results in the Quebec Founder Population (QFP). SNP
markers found to be associated with Endometriosis from the analysis of genome wide scan (GWS) data:
has_DNAH5-1_cr. Columns include: Region ID; Chromosome; Build 36 location in base pairs (bp); rs#,
dbSNP data base (NCBI) reference number; Sequence ID, unique numerical identifier for this patent
application; Sequence, 21 bp of sequence covering 10 base pair of unique sequence flanking either
side of central polymorphic SNP; - log10 P values for GWS, - log10 of the P value for statistical
significance from the GWS for single SNP markers (both T test and Permutation test p-values are
displayed; see Example section) and for the most highly associated multi-marker haplotypes centered
at the reference marker and defined by the sliding windows of specified sizes.

                                                                             ldstatv2        ldstatv2   ldstatv2   ldstatv2   ldstatv2   
Region ID   Chr   B36 Position   RS#        Seq ID   Flanking Sequence       Single Marker   W03        W05        W07        W09        
225         3     12420807       1151996    4657     AGGCCCCTACMAAACAATAGT   0.657           -          -          -          -          
225         3     12425354       709149     4658     AAAAAGCCTCRGTGGTCAAGA   0.373           1.458      -          -          -          
225         3     12437024       709157     4659     GCCTCATTCTRAGCTGGCTGT   0.073           0.889      2.611      -          -          
225         3     12443463       13099634   4660     ATTAAAAATCYTGAAGGTCAT   0.948           0.882      1.737      1.832      -          
225         3     12456375       4498025    4661     TTTAGTGCCAYGGGCTTGACT   0.019           0.483      0.466      1.017      1.184      
225         3     12458451       1152005    4662     AAGGAGAATAYTCCGCACAGG   0.521           0.188      0.805      1.137      1.503      
225         3     12461964       10440120   4663     CAAGGCCCTCMGGCCTGGGGA   0.508           0.643      0.965      1.008      1.356      
225         3     12468347       9855622    4664     TGGTTGTTGGYGGGAGGCCTC   1.509           0.880      1.398      2.131      1.386      
225         3     12475651       9809905    4665     GTGGGGTATTKCACCAGGTTC   0.152           1.545      2.055      2.133      3.114      
225         3     12486512       1151988    4666     AGTAGCTGGCRTTATTGAGCA   1.840           2.445      2.639      2.971      1.815      
225         3     12489569       709163     4667     GACAAGTTTCRGAAGTAGCAG   4.137           2.897      3.348      1.729      1.699      
225         3     12496180       709162     4668     TCACACACAGKGTCAACTCTA   1.358           4.135      3.778      2.507      1.933      
225         3     12526807       6766510    4669     TCACATTCTTYAACTGTGTTG   0.747           2.011      3.227      2.847      1.784      
225         3     12554944       1466835    4670     TGTAACTAACKCTCAGTTGGC   3.290           1.655      1.093      2.104      1.407      
225         3     12577494       2450855    4671     GGACAAGCAGRATGTGCTCTA   1.931           1.437      0.977      0.472      0.969      
225         3     12583045       2442802    4672     AAACTCATCTMATGTAATTCT   2.055           1.055      0.986      0.760      1.560      
225         3     12591533       3773341    4673     TCTTAGCTGTRGGAGCTAGGA   0.058           0.820      0.423      2.406      2.277      
225         3     12599070       15997      4674     CTGGCTCTTAYCTTTGATCTT   1.009           1.198      3.389      2.873      2.607      
225         3     12610706       1532533    4675     AGGGATGAAGRTAAGAAATCC   1.882           4.920      5.384      3.364      3.057      
225         3     12611255       1532534    4676     TTCTAAATCCKCACTACTATG   6.508           5.441      7.051      5.595      3.585      
225         3     12630689       9809501    4677     CCAAGACTTTKGGCTCATATG   1.473           5.636      7.114      7.051      5.201      
225         3     12643726       6792773    4678     CTAAACCATAYAAATTATTTC   2.284           1.707      7.427      6.773      6.407      
225         3     12648275       11128607   4679     CCATGTGTCTRGTATACAGAC   2.284           2.284      4.011      6.678      5.710      
225         3     12651113       9817675    4680     CAAGAATCCAYAATTATGTGA   2.284           3.245      4.007      6.406      5.710      
225         3     12664858       6442322    4681     AAACACTAACRATTTCCACAC   1.053           2.808      6.855      6.183      5.505      
225         3     12671288       11710163   4682     ACAACATTATRCACAAGTTTA   0.981           2.419      6.183      5.440      5.699      
225         3     12680048       5746154    4683     AATGCGCATGRCATAAGGGTG   0.770           1.823      5.951      5.699      6.563      
225         3     12684167       7617041    4684     GACTTGGAGARCTCATTTAAA   2.872           4.580      6.258      7.291      3.437      
225         3     12697870       6442323    4685     TTTAGCCTTARGATGAACCTT   1.544           4.792      6.757      3.689      2.741      
225         3     12704485       4684111    4686     TATTTGTCCTKCCTGAGGTTT   2.254           5.551      4.786      2.895      2.205      
225         3     12704887       6792154    4687     GATTATTTCTYTAATATAGAG   6.546           4.503      4.950      1.767      1.407      
225         3     12731946       12637499   4688     ATTAAGAATGYACCAGATATT   2.826           4.108      2.841      1.859      1.387      
225         3     12738841       6442325    4689     CTCCATGTCTMCATGTTTCTA   0.738           1.914      2.908      1.818      1.628      
225         3     12763938       1467025    4690     ATGGGTTGCTRTGAGAATTGA   2.549           0.908      2.619      2.368      1.454      
225         3     12772563       6770851    4691     GAAAGGAGTCYGACACATGAA   0.123           1.086      0.723      1.935      1.944      
225         3     12772747       6783990    4692     CCACTACCATKGGTGATTGAA   0.038           0.963      0.655      0.684      0.999      
225         3     12780910       9812144    4693     TCTTCACTCARGTCTCCCTGA   1.761           1.310      0.400      0.229      0.700      
225         3     12792622       7624896    4694     AGTCTCACGARATCTGATAGT   2.484           0.760      0.439      0.296      0.235      
225         3     12805775       1467026    4695     ATCACCATTCRACAGTAATAC   2.097           1.042      0.426      0.312      0.703      
225         3     12811792       4034942    4696     CCTTGTTGTAYAGATCTGCAC   1.829           0.714      0.432      1.045      0.295      
225         3     12823822       11718898   4697     CCTCTGGTGGYCAAAGTGAAG   1.330           0.856      0.984      0.586      0.300      
225         3     12832493       2305397    4698     GAGCATATGCYTGTGCTGGTA   1.716           1.384      0.715      0.460      0.184      
225         3     12835988       906671     4699     TTCTCTACTCRGAAAGCAAGC   0.681           0.736      0.465      0.136      0.082      
225         3     12836608       3817121    4700     CCGGAGCACCRTCATCACAGC   0.095           0.050      0.075      0.238      0.210      
225         3     12841725       7629133    4701     GACATTGAGGYTCTCCAAGGT   0.347           0.920      0.129      0.009      -          
225         3     12846267       7612690    4702     TATGAGACCTRTTTTCTAGAA   0.305           0.969      0.239      -          -          
225         3     12848265       3732680    4703     GGCTTTGAGARGTTGTTATTG   0.367           0.145      -          -          -          
225         3     12860815       7617901    4704     CAGCTCGAAGRCTCCATGCCC   0.258           -          -          -          -          
