
                                SEQUENCE LISTING

<110> Yin, Peng
      Pierce, Niles A.

<120> A VERSATILE NUCLEIC ACID HAIRPIN MOTIF
  FOR PROGRAMMING BIOMOLECULAR SELF-ASSEMBLY PATHWAYS
  

<130> CALTE.042VPC

<150> 60/930,457          
<151> 2007-05-16  

<160> 107

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 54
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 1
gcttgagatg ttagggagta gtgctccaat cacaacgcac tactccctaa catc       54

<210> 2
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 2
gcttgagatg ttagg                                                  15

<210> 3
<211> 39
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 3
gagtagtgct ccaatcacaa cgcactactc cctaacatc                        39

<210> 4
<211> 54
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 4
agggagtagt gcgttgtgat tggaaacatc tcaagctcca atcacaacgc acta       54

<210> 5
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 5
agggagtagt gcgtt                                                  15

<210> 6
<211> 39
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 6
gtgattggaa acatctcaag ctccaatcac aacgcacta                        39

<210> 7
<211> 54
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 7
gttgtgattg gagcttgaga tgttgcacta ctccctaaca tctcaagctc caat       54

<210> 8
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 8
gttgtgattg gagct                                                  15

<210> 9
<211> 39
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 9
tgagatgttg cactactccc taacatctca agctccaat                        39

<210> 10
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 10
gcactactcc ctaacatctc aagc                                        24

<210> 11
<211> 72
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 11
gcttgagatg ttagggagta gtgctccaat cacaacgcac tactccctaa catcaaccac 60
caccaaccac cc                                                     72

<210> 12
<211> 46
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 12
gcttgagatg ttagggagta gtgctccaat cacaacgcac tactcc                46

<210> 13
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 13
ctaacatcaa ccaccaccaa ccaccc                                      26

<210> 14
<211> 72
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 14
agggagtagt gcgttgtgat tggaactcat ctaccgtcca atcacaacgc actaacaaca 60
cacacaaacc ac                                                     72

<210> 15
<211> 45
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 15
agggagtagt gcgttgtgat tggaactcat ctaccgtcca atcac                 45

<210> 16
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 16
aacgcactaa caacacacac aaaccac                                     27

<210> 17
<211> 72
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 17
gttgtgattg gacggtagat gagtaacatc tcaagcactc atctaccgtc caatatcctt 60
cccttcctct cc                                                     72

<210> 18
<211> 46
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 18
gttgtgattg gacggtagat gagtaacatc tcaagcactc atctac                46

<210> 19
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 19
cgtccaatat ccttcccttc ctctcc                                      26

<210> 20
<211> 72
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 20
cggtagatga gtgcttgaga tgttgcacta ctccctaaca tctcaagcac tcattctctt 60
cttctcttct tc                                                     72

<210> 21
<211> 46
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 21
cggtagatga gtgcttgaga tgttgcacta ctccctaaca tctcaa                46

<210> 22
<211> 26
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 22
gcactcattc tcttcttctc ttcttc                                      26

<210> 23
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 23
gcactactcc ctaacatctc aagc                                        24

<210> 24
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 24
gggtggttgg tggtggttga tgtt                                        24

<210> 25
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 25
gtggtttgtg tgtgttgtta gtgc                                        24

<210> 26
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 26
ggagaggaag ggaaggatat tgga                                        24

<210> 27
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 27
gaagaagaga agaagagaat gagt                                        24

<210> 28
<211> 78
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 28
acaactgaac acgttagacc acttccatcc tcgcaaatct ccacaactaa gtggtctaac 60
gtgttcagtt gtggagat                                               78

<210> 29
<211> 62
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' tetrachlorofluorescein

<220> 
<223> Synthetic oligonucleotide

<400> 29
ttacaactga acacgttaga ccacttccat cctcgcaaat ctccacaact aagtggtcta 60
ac                                                                62

<210> 30
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<221> modified_base  
<222> 18
<223> 3' black hole quencher-1

<220> 
<223> Synthetic oligonucleotide

<400> 30
gtgttcagtt gtggagat                                               18

<210> 31
<211> 96
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 31
gaacactgct ctccacttcc atcctcgcaa atctccacaa ctgaacacgt tagaccactt 60
agttgtggag atttgcgagg atggaagtgg tctaac                           96

<210> 32
<211> 78
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 32
gaacactgct ctccacttcc atcctcgcaa atctccacaa ctgaacacgt tagaccactt 60
agttgtggag atttgcga                                               78

<210> 33
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 33
ggatggaagt ggtctaac                                               18

<210> 34
<211> 78
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 34
ttgcgaggat ggaagtggag agcagtgttc ccatcctcgc aaatctccac aactgaacac 60
tgctctccac ttccatcc                                               78

<210> 35
<211> 68
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 35
ttgcgaggat ggaagtggag agcagtgttc ccatcctcgc aaatctccac aactgaacac 60
tgctctcc                                                          68

<210> 36
<211> 10
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 36
acttccatcc                                                        10

<210> 37
<211> 96
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 37
agagcagtgt tcagttgtgg agatttgcga ggatgggaac actgctctcc acttccatcc 60
tcgcaaatct ccacaactga acacgttaga ccactt                           96

<210> 38
<211> 72
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 38
agagcagtgt tcagttgtgg agatttgcga ggatgggaac actgctctcc acttccatcc 60
tcgcaaatct cc                                                     72

<210> 39
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 39
acaactgaac acgttagacc actt                                        24

<210> 40
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 40
atctccacaa ctgaacacgt tagaccactt                                  30

<210> 41
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 41
caaactctta tctatctctg ccattttaat gcaatgtcac ggtaatggca gagatagata 60
atgcaatgtc acggtaa                                                77

<210> 42
<211> 52
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 42
caaactctta tctatctctg ccattttaat gcaatgtcac ggtaatggca ga         52

<210> 43
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 43
gatagataat gcaatgtcac ggtaa                                       25

<210> 44
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<221> modified_base  
<222> 27
<223> 3' Cy5

<220> 
<223> Synthetic oligonucleotide

<400> 44
gatagataat gcaatgtcac ggtaatt                                     27

<210> 45
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 45
tctgccatta ccgtgacatt gcattttaag ctacaggact acgaatgcaa tgtcacggta 60
agctacagga ctacgaa                                                77

<210> 46
<211> 52
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 46
tctgccatta ccgtgacatt gcattttaag ctacaggact acgaatgcaa tg         52

<210> 47
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 47
tcacggtaag ctacaggact acgaa                                       25

<210> 48
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 48
cattgcattc gtagtcctgt agcttttaag tatcagatcg ccgaagctac aggactacga 60
agtatcagat cgccgaa                                                77

<210> 49
<211> 52
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 49
cattgcattc gtagtcctgt agcttttaag tatcagatcg ccgaagctac ag         52

<210> 50
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 50
gactacgaag tatcagatcg ccgaa                                       25

<210> 51
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 51
ctgtagcttc ggcgatctga tacttttaat gaccaaacca cctaagtatc agatcgccga 60
atgaccaaac cacctaa                                                77

<210> 52
<211> 52
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 52
ctgtagcttc ggcgatctga tacttttaat gaccaaacca cctaagtatc ag         52

<210> 53
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 53
atcgccgaat gaccaaacca cctaa                                       25

<210> 54
<211> 61
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 54
ctgatactta ggtggtttgg tcattttaac tccactccta ctcaatgacc aaaccaccta 60
a                                                                 61

<210> 55
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 55
ctgatactta ggtggt                                                 16

<210> 56
<211> 45
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 56
ttggtcattt taactccact cctactcaat gaccaaacca cctaa                 45

<210> 57
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 57
aagctacagg actacgaatg caatgtcacg gtaagctaca ggactacgaa ttttaccgtg 60
acattgcatt atctatc                                                77

<210> 58
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 58
aagctacagg actacgaatg caatg                                       25

<210> 59
<211> 52
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 59
tcacggtaag ctacaggact acgaatttta ccgtgacatt gcattatcta tc         52

<210> 60
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 60
aagtatcaga tcgccgaagc tacaggacta cgaagtatca gatcgccgaa ttttcgtagt 60
cctgtagctt accgtga                                                77

<210> 61
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 61
aagtatcaga tcgccgaagc tacag                                       25

<210> 62
<211> 52
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 62
gactacgaag tatcagatcg ccgaattttc gtagtcctgt agcttaccgt ga         52

<210> 63
<211> 61
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 63
aatgaccaaa ccacctaact ccactcctac tcaattttag gtggtttggt cattcggcga 60
t                                                                 61

<210> 64
<211> 45
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 64
aatgaccaaa ccacctaact ccactcctac tcaattttag gtggt                 45

<210> 65
<211> 16
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 65
ttggtcattc ggcgat                                                 16

<210> 66
<211> 25
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 66
aatggcagag atagataaga gtttg                                       25

<210> 67
<211> 59
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 67
aagtagtgat tgagcgtgat gaatgtcact acttcaactc gcattcatca cgctcaatc  59

<210> 68
<211> 49
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 68
aagtagtgat tgagcgtgat gaatgtcact acttcaactc gcattcatc             49

<210> 69
<211> 10
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 69
acgctcaatc                                                        10

<210> 70
<211> 59
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 70
tgatgaatgc gagttgaagt agtgacattc atcacgctca atcactactt caactcgca  59

<210> 71
<211> 49
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 71
tgatgaatcc gagttgaagt agtgacattc atcacgctca atcactact             49

<210> 72
<211> 10
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 72
tcaactcgca                                                        10

<210> 73
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 73
gacattcatc acgctcaatc actactt                                     27

<210> 74
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 27
<223> 3' 6-carboxyfluorescein

<220> 
<223> Synthetic oligonucleotide

<400> 74
gacattcatc acgctcaatc actactt                                     27

<210> 75
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 75
ggtagttcta ggcagctgaa gtagtgattg agcgtgatga atgtcactac ttcaactcgc 60
attcatcacg ctcaatc                                                77

<210> 76
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 76
ggtagttcta ggcagctgaa gtagtgattg agcgt                            35

<210> 77
<211> 42
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 77
gatgaatgtc actacttcaa ctcgcattca tcacgctcaa tc                    42

<210> 78
<211> 70
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 78
tcataggcac cgtcagacag gatagagcag tgcatagata gtcatagcct tggacctgcc 60
tagaactacc                                                        70

<210> 79
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 79
gtccaaggct atgactatct atgcact                                     27

<210> 80
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 80
gctctatcct gtctgctgaa gtagtgattg agcgtgatga atgtcactac ttcaactcgc 60
attcatcacg ctcaatc                                                77

<210> 81
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 81
gctctatcct gtctgctgaa gtagtgattg agcgt                            35

<210> 82
<211> 42
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 82
gatgaatgtc actacttcaa ctcgcattca tcacgctcaa tc                    42

<210> 83
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 83
acggtgccta tgacatggta ctcagct                                     27

<210> 84
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 84
gctcgtatct ggtcgctgaa gtagtgattg agcgtgatga atgtcactac ttcaactcgc 60
attcatcacg ctcaatc                                                77

<210> 85
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 85
gctcgtatct ggtcgctgaa gtagtgattg agcgt                            35

<210> 86
<211> 42
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 86
gatgaatgtc actacttcaa ctcgcattca tcacgctcaa tc                    42

<210> 87
<211> 128
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 87
cgtaagtcgc agagtatgcc attgcctcat cagcgtagca tcgagatcta agttagtaac 60
tctggcagcc tggtagagcg agcctatcgt cctgatgtac gaccagatac gagcagctga 120
gtaccatg                                                          128

<210> 88
<211> 114
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 88
cgtaagtcgc agagtatgcc attgcctcat cagcgtagca tcgagatcta agttagtaac 60
tctggcagcc tggtagagcg agcctatcgt cctgatgtac gaccagatac gagc       114

<210> 89
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' carboxytetramethylrhodamine (NHS Ester)

<220> 
<223> Synthetic oligonucleotide

<400> 89
tacatcagga cgataggctc gctctac                                     27

<210> 90
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' 6-carboxy-4', 5'dichloro-2',
      7'-dimethoxyfluorescein (NHS Ester)

<220> 
<223> Synthetic oligonucleotide

<400> 90
tacatcagga cgataggctc gctctac                                     27

<210> 91
<211> 76
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 91
caggctgcca gagttctgaa gtagtgattg agcgtgatga atgtcatact tcaactcgca 60
ttcatcacgc tcaatc                                                 76

<210> 92
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 92
caggctgcca gagttctgaa gtagtgattg agcgt                            35

<210> 93
<211> 42
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 93
gatgaatgtc actacttcaa ctcgcattca tcacgctcaa tc                    42

<210> 94
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' carboxytetramethylrhodamine (NHS Ester)

<220> 
<223> Synthetic oligonucleotide

<400> 94
actaacttag atctcgatgc tacgctg                                     27

<210> 95
<211> 27
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' 6-carboxy-4', 5'dichloro-2',
      7'-dimethoxyfluorescein (NHS Ester)

<220> 
<223> Synthetic oligonucleotide

<400> 95
actaacttag atctcgatgc tacgctg                                     27

<210> 96
<211> 77
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 96
atgaggcaat ggcattagaa gtagtgattg agcgtgatga atgtcactac ttcaactcgc 60
attcatcacg ctcaatc                                                77

<210> 97
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 97
atgaggcaat ggcattagaa gtagtgattg agcgt                            35

<210> 98
<211> 42
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 98
gatgaatgtc actacttcaa ctcgcattca tcacgctcaa tc                    42

<210> 99
<211> 15
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 1
<223> 5' phosphorylation

<220> 
<223> Synthetic oligonucleotide

<400> 99
actctgcgac ttacg                                                  15

<210> 100
<211> 58
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 100
ttgcctcgta tcctaaccga acggactcca ggacattcat cacgctcaat cactactt   58

<210> 101
<211> 29
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 101
ttgcctcgta tcctaaccga acggactcc                                   29

<210> 102
<211> 29
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 29
<223> 3' black hole quencher-1

<220> 
<223> Synthetic oligonucleotide

<400> 102
aggacattca tcacgctcaa tcactactt                                   29

<210> 103
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 103
cgtgatgaat gtcctggagt ccgttcggtt                                  30

<210> 104
<211> 58
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 104
gtccgttcgg ttaggatacg aggcaatcca ggacattcat cacgctcaat cactactt   58

<210> 105
<211> 29
<212> DNA
<213> Artificial Sequence

<220> 
<221> modified_base  
<222> 29
<223> 3' black hole quencher-1

<220> 
<223> Synthetic oligonucleotide

<400> 105
gtccgttcgg ttaggatacg aggcaatcc                                   29

<210> 106
<211> 29
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 106
aggacattca tcacgctcaa tcactactt                                   29

<210> 107
<211> 30
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 107
cgtgatgaat gtcctggatt gcctcgtatc                                  30
