                         SEQUENCE LISTING

<110>  The Government of the United States of America, as 
       represented by the Secretary of the Department of Health and 
       Human Services, Centers for Disease Control and Prevention
       Switzer, William M
       Heneine, Walid
       Folks, Thomas M
       Wolfe, Nathan D
       Burke, Donald S
       Sintasath, David M
 
<120>  NOVEL SIMIAN T-CELL LYMPHOTROPIC VIRUS

<130>  6395-76253-03

<150>  US 60/990,138
<151>  2007-11-26

<150>  US 60/939,304
<151>  2007-05-21

<160>  26    

<170>  PatentIn version 3.5

<210>  1
<211>  8913
<212>  DNA
<213>  STLV-3 subtype D

<400>  1
tgacagtgac agcaagcccc aaggcgagcc acaactacta gccaaagggc atacagttga       60

atcatctgtc taggggacgt ctcgcaccca gagtatgtcc aaagaacacc agggctctga      120

cgtctctccc tgccttgtct cccggaaaaa accttaaacc acccatttcc tcatgtttgc      180

ccaaggctct gacgataacc ctgaaaaatt tgactaacaa ataaaggaac ctggacccta      240

taaaagggga gagcgaccta aaaatgggat caaccttttc tccccaacgc cctttcgcgc      300

cccgcggaca gccactgtcc gggctactcc tggcctacct agatcattgc tccgcgcccg      360

agccattctt ctgcagccaa gcggcacctt gcaccttcgc ttctcctgtc ctggtaagat      420

cccactgggt agagctaggc cgttactccc tggccgctcc cctggagctc ctttgcttag      480

ctcttaaggt cgctctctcc ttctcgttag ggtccaagga ctaactttac ttccgtgtct      540

cggtctcctt tctttggcgg tctcgtctaa agtcgaaagt aacacctcaa actgtcagca      600

gcgaggcctg gcccggggcc agcgcctgtg agctttactc ggctcggagc caggggctca      660

gaaagtaaag gctgtagctg ccagcctttg aggggaacca aaaacaggtg ggggctcgtc      720

cgggattgat caccctccta ttaaacatgg gaaattcata cagccgtgcc gccaacccca      780

tccccaaggc cccaaaaggg ctagcaattc accactggtt aaactttcta caagctgcct      840

atcggctgca accggggccc tcagagtttg atttccatca gttacgaaat tttcttaaat      900

tagctataaa aacccctgtt tggctaaacc ccatcaatta ttccgtccta gctgaactcg      960

ttcctaaaaa ttatccaggc agaatccaag aaattatagc catcctaatc caagaaacct     1020

ctacgcagga ggttccccca tccgccccac cggccagcga accccaaaat cccccgcctt     1080

atccagaacc agggcaagcc ataccccagt gcctacctgt tctgcacccc catggtgccc     1140

ctgccgccca tcgcccttgg cagatgaaag atctccaagc tataaaacag gaagttacct     1200

cttccgcacc agggagccct cagttcatgc aaaccgtgcg cctggcagtc caacaatttg     1260

acccgactgc caaagacctc catgacctct tacaatacct gtgctcctca ctagttgcct     1320

ccctgcacca ccagcagctc gagaccctca tcgctcaggc tgaaacccaa gggataaccg     1380

gatataatcc cctggccggc cccctgcgag tacaggccaa caacccaact cagcaagggc     1440

tccggcgaga ataccaaaac ttatggctgt cggccttttc tgccctccca ggaaatacta     1500

aagaccccac ctgggcggca atcctccagg gccccgagga accgttttgc acattcgtag     1560

aaagacttaa tgtggcccta gacaacggcc tccctgaagg aacccccaaa gagcctattc     1620

ttcggtcctt agcatattct aatgccaaca aagaatgcca gaaactccta caagcccgag     1680

ggcagacaaa cggtccctta ggggacatgc tcagagcttg ccaggcgtgg acgccccggg     1740

acaaaaacaa agtactaatg gtccaaccta aaaagacacc tcccccaaat caaccatgct     1800

tccggtgcgg gcaggcgggc cactggagca gagactgtaa acaacctcgt ccccccccag     1860

gcccatgtcc gctctgtcaa gaccccaccc actggaagcg agattgcccg cagctaaaac     1920

cagatcctga agaaggcatg ttgttagatc tgccttgtga agacccagcg gccagagacc     1980

aaaaaaactt catagggggg gaggactagc ctccccccaa acagtgctgc cttttatacc     2040

attatcccag caaaaacaac cagtcctaca cgtccgagta tccttcccag gtaccccccc     2100

agtaagcatc caggcgcttt tagacacagg ggcagatgta accgtcctcc cagcccgtct     2160

atgcccccct gacctaaaat tacaagacac cactgtcctt ggagccagcg ggccaagcac     2220

cgacaagttt aaagttctac cctgttttac gtatgtccat ctgcccttcc gaggacgacc     2280

agtaacctta ccatcatgct taattgatat taataatcaa tgggccattc taggccgaga     2340

tgtcctccag caatgccaaa gttcccttta ccttgcagac caaccctctc gcgttctacc     2400

aatccagaca cctagtgtca ttgggctgga acatctcccc ccgcccccag aagttccaca     2460

atttccgtta aaccagagcg cctccaggcc ttgactgacc tggtatccaa ggcgctggag     2520

gccaaataca tagaacctta tcaaggacca ggcaataatc caattttccc ggtcaaaaaa     2580

ccgaatggaa aatggcgctt catccatgat ctccgggcca ccaactgcct cactaaaacc     2640

ctaacttccc cgtctcccgg cccccccgac cttaccagtc tgccccaagg cctcccacat     2700

cttcgaacca ttgacctgac tgacgccttt tttcaaatcc cactgcctgt tgccttccag     2760

ccctattttg catttaccct ccctcagccc aacaaccatg gccccggggc tcggtattcc     2820

tggaaagtac taccccaagg gtttaaaaat agcccaactc tatttgaaca acaactctct     2880

catatactca cacctgtaag acaggccttt ccaaaatcta tagtcattca gtacatggat     2940

gacatactct tggccagccc tacccttgaa gagtccatcg ttctcgccca ggaaataacc     3000

aatgctctag cccaggaggg cttgcccatg tccacagaaa aaacccaatc cactcctggt     3060

cccatacact ttctcggaca aaccatatcc aaaaaataca taacttatga aaccctccct     3120

accatacatg tcaagcctaa ttggacctta acagaattac agtccacctt aggggaattg     3180

caatgggtat ccaaagggac tcctacactc cgctcatccc tccatcaatt atatacggcc     3240

ctccgaggtc atcatgaccc ccgcgatacc atacaactta ccccaccaca actacaagcg     3300

ctcaacacgc ttcaaaaggc tctgacccac aattgcagaa gcagaatagt cagtaatctg     3360

cctatcctgg ccctcataat gctccgcccc acaggcacta cagcagttct ttttcaaaca     3420

aaacaaaagt ggccacttgt ctggctgcac accccccacc cggccactag tctgcgcctt     3480

tggggacaat tattggccaa tgccatcatt actctagata agtactcact acaacactat     3540

ggccaggtat gcaaatcctt tcatcataac atatctaatc aggcccttac ccactaccta     3600

cacacgtcag accagtcaag tgttgccatt ctcctacagc actcgcatag gttccataat     3660

ctcggggccc aaccatcggg accatggaaa ggcctcctac aagtacccca aatcttccaa     3720

aatgttgcca cacttagccc tccattcact atttcacctg tggttatcaa ccacgcccct     3780

tgcctctttt ccgatggatc caactctcag gctgccttca ctatctggga taaaaaaata     3840

attcaccaac aagtccttcc tcttcctacc gccagctcgg ctcaagcagg ggaacttttt     3900

gccctattag cggccctacg agaatgcaaa ccctggtcat cactaaacat attcttagac     3960

tcaaagtttc ttgttggcca gctccggcgc ctggcccttg gggctttcat aggtccatcc     4020

acccaatgtg acttacactc gcaactcctg ccgctcttgt ataacaaaac catttatgtt     4080

catcatgtaa gaagccacac cttattacag gaccctatat cccgcctcaa tgaggctacc     4140

gatgccctca tgctcgcacc ccttctgccc ctcagtccag cgacccttca tgaaatcacc     4200

cactgcaacc cccctgcact gtgcaaccat ggggctacag caactgagac taaggctatt     4260

gtccgggcat gtcacacctg taagataacc aatccccaag ggagactgcc ccagggtcac     4320

attcgcagag ggcacgcccc aaacactatc tggcaaggag atgtcactca cctacaatac     4380

aaaaaatata aatactgcct tttagtctgg gtcgatactt actcaggagc agtagctgtg     4440

tcgtgccggc gtaaagaaac cagctcagaa tgtgtggcct cgctgctagc agccatttcc     4500

atcctaggaa aaccacacac cattaataca gacaatgggg cagcatattt gtcccaggaa     4560

ttccaacaat tttgtacctc actctccata aaacacacca ctcatgtccc ctacaatccc     4620

accagttccg gattagtgga aagaactaat ggaatcctaa aaaccttaat ctccaaatac     4680

ctcctagatg accaccactt gcccctggac acagccattt ccaaaacttt gtggaccata     4740

aaccatctca atgtcctctc ttcctgccaa aagacacgat ggcagttaca tcaagctcaa     4800

cccctgcccc ccgttcctga gaatttgccc cttcctgaac cagtgccaaa atggtattat     4860

tataaaatcc caggtcttac cagttcaagg tggagtgggc ctgtacaatc tgttaaagaa     4920

gcagccggag cggccctcat cccggtaggt actaggcaca tctggattcc gtggcgtctc     4980

ctgaaacgag gtgcatgccc aagacccgga gacagcgtaa ccaccgaatc aaaacacaaa     5040

gaccttcaac tccatgggta agtctagtct ctttatttgc ctcttttgct catacatggc     5100

tagtctcttt gtccctggcg accccagtcg gtgcacactt tttataggag cctcctccta     5160

ccactccagt ccctgcgggt ctaactaccc tcaatgtact tggacactcg acctagtgtc     5220

acttaccagg gatcaaagtc taaaccctcc atgcccagat ctagtcacct actcccagta     5280

tcacagacct tattccttgt atctttttcc ccattggatt actaaaccga atcgtcaagg     5340

ccttggttat tactctgcct cctactcaga tccctgtgct atcaagtgcc cctacctagg     5400

atgtcaatct tggacatgtc cctatacagg acctatgtcc agcccatact ggaagtacac     5460

ctcagaccta aatttcaccc aaaaggtgtc ctctgtcacc ctccatctac atttctcaaa     5520

atgcggatcc tccttctctc ttttactcga cgcacccggt tatgaccccg tatggttcct     5580

ttcctcccaa actacacagg ccccacctac acccgcccct ctgacacaag actccgactt     5640

ccaacatatc ttggagccct ctgtgccctg gagctccaaa atcctcaacc ttatcctctt     5700

aactcttaaa agcactaact actcctgcat ggtttgcgtt gaccgctcca gcctctcctc     5760

atggcatgtc ttgtatgacc cactaaaagt tcccaagcaa cacgaacccc gtgcccgggc     5820

cctcttgcgg ccctctctgg ccattccaat aactaatacc acacccccct ttccttggtc     5880

ccattgctac tgcccccttc tacaggctgt catctccaat aactgcaaca actcagttat     5940

actgcccccc ttctctctgt cccctgtcct cgatctctcc aagcctcgtc agcgccgagc     6000

cgtccccatc gccgtttggc tggtgtccgc cctagcggtc ggtacaggta tagccggcgg     6060

caccaccggg tccctatcct tggcatccag caggagcctg ctacatgaag tagaccaaga     6120

tataagccat ctcactcaag ccatagttaa gaaccataac aatatccttc gggttgctca     6180

atacgctgca caaaaccgac gaggcctaga tttactcttc tgggaacaag gaggtctatg     6240

caaggctatc agggaacaat gttgttttct caatatcagc aatacccacg tgtctgtgct     6300

ccaagagaga ccccccttag aaaaaagggt gattaccggt tggggactca attgggacct     6360

cggcctatcc caatgggccc gtgaagccct ccagaccggt attaccctgt tagccctctt     6420

cctcctactt atcatggtag gcccttgtgt cctgcgccag ctacaggccc tcctgttccg     6480

cctacagcac cgtagccacc catactccct cctcaatcgc gaaaccaacc tataacacct     6540

ctgcaacctc ctgtagcaat gagccatagt cctcgcccct accagaaacc cacatacagc     6600

ataggcccga agaatctccc caaatatcca tgccttgact ccagtaatcc atgtacccaa     6660

agtattcccc taatgcctcc tcacaatcca cgcgaagttg gaaattctct cgttccaaaa     6720

agtctatata acccgtcaac aaattgcaaa acccctcaaa ccccagtaag tctatacaat     6780

ccaactgctg ccgccgctcc ttttttctcc tctttctctc ctctttttcc tcgtgacacc     6840

tcctccggcg ctcttctctt cttttccgac cccgccagta gcttagcaat tgcttctgct     6900

cctgagcaag gtcttctaag cgacccttcc aatatcctga atcctttgta ctagatccca     6960

gaggacgccc tcggggtcgc ctaccacccc cctgcagcat gtccacttga tcttttcccg     7020

attgatcaca caactccaat aaagcttcca ccggtgtgag aggatcttcg gccgccagta     7080

tcggtggtcc cacactccta gaccgagagg tcaagctgcc cccggaagta gagacgcagg     7140

aatacaccac aggcatagtc cccgcagttg tggtctctgg agtcagtaaa ggcatcttcc     7200

taaaataccc tgtaaaataa tctcctgtca gcccactttc caggtttcgg gcagagcctg     7260

ctctacgggt accctgtcta cgttttcggc gattgtgtgc aggccgattg gtgccccatt     7320

tccggggggc tttgttccgc ccggctacat cggcacgcct tactggccac ctgtcctgaa     7380

caccagatca cctgggaccc catcgatgga cgcgttgtca gctcgcctct acaatacctt     7440

atccctcgcc tcccctcctt ccccacccaa agaacttccc gcaccctcaa ggtcctcacc     7500

ccgccgccca ctgctacaac ccccaaagtt cctccctcct tcttccatgc agtcaggaaa     7560

cacacccctt tccgaaacaa ctgcctcgag ctcaccttgg gagagcaact acccgccatg     7620

tctttccccg accccggcct ccgaccccaa aatgtctata ccatgtgggg aagcaccatc     7680

gtgtgcttat acctctacca actcacacct ccaatgacct ggccgttaat cccacatgtc     7740

attttttgcc atccggacca actaggggcc ttcctaacaa aaatccctac caaacgcttg     7800

gaagaactct tatacaaact attcttaagt acaggggcca tacttatcct acctgaaaat     7860

tgcttcccaa ctaccctgtt tcagcccacc cgcgcaccag taattcaagc cccctggcac     7920

tcaggcctac tcccatacct aaaggaaatt gtcacccccg ggctgatttg ggtgtttact     7980

gacggtagtt ctatgatttc cggaccctgc cccaaggaag ggcagccatc tttggtggtc     8040

caatcatcta cattcatttt ccaaaaattt caaaccaaag cctatcaccc agccttcctc     8100

ctgtcccata aattaatcca atactcctcg ttccattccc tccatctact ttttgaagaa     8160

tacaccactg tccccttttc tttattgttt aacgaaaaag aggcaaatga cagtgacagc     8220

aagccccaag gcgagccaca actactagcc aaagggcata cagttgaatc atctgtctag     8280

gggacgtctc gcacccagag tatgtccaaa gaacaccagg gctctgacgt ctctccctgc     8340

cttgtctccc ggaaaaaacc ttaaaccacc catttcctca tgtttgccca aggctctgac     8400

gataaccctg aaaaatttga ctaacaaata aaggaacctg gaccctataa aaggggagag     8460

cgacctaaaa atgggatcaa ccttttctcc ccaacgccct ttcgcgcccc gcggacagcc     8520

actgtccggg ctactcctgg cctacctaga tcattgctcc gcgcccgagc cattcttctg     8580

cagccaagcg gcaccttgca ccttcgcttc tcctgtcctg gtaagatccc actgggtaga     8640

gctaggccgt tactccctgg ccgctcccct ggagctcctt tgcttagctc ttaaggtcgc     8700

tctctccttc tcgttagggt ccaaggacta actttacttc cgtgtctcgg tctcctttct     8760

ttggcggtct cgtctaaagt cgaaagtaac acctcaaact gtcagcagcg aggcctggcc     8820

cggggccagc gcctgtgagc tttactcggc tcggagccag gggctcagaa agtaaaggct     8880

gtagctgcca gcctttgagg ggaaccaaaa aca                                  8913


<210>  2
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Theoretical nucleic acid molecule illustrating percent sequence 
       identity.

<400>  2
atggtggacc cggtgggctt                                                   20


<210>  3
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Theoretical nucleic acid molecule illustrating percent sequence 
       identity.

<400>  3
acgggggatc cggcgggcct                                                   20


<210>  4
<211>  25
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  4
gtaccctgtc tacgttttcg gcgat                                             25


<210>  5
<211>  26
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (6)..(6)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (11)..(11)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is a, c, g, or t

<400>  5
gangantgna ntacnaaaga tggctg                                            26


<210>  6
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  6
ttactggcca cctgtcctga acac                                              24


<210>  7
<211>  23
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (7)..(7)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is a, c, g, or t

<400>  7
ttngggnang gnccggaaat cat                                               23


<210>  8
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  8
catccggacc aactaggggc cttc                                              24


<210>  9
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  9
cagcccaccc gcgcaccagt aatt                                              24


<210>  10
<211>  27
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.


<220>
<221>  misc_feature
<222>  (9)..(9)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (13)..(16)
<223>  n is a, c, g, or t

<400>  10
tcctgaacng tcnnnncgct tttatag                                           27


<210>  11
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  11
aacaaaaatc cctaccaaac gctt                                              24


<210>  12
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  12
ctctgacgtc tctccctgcc ttgt                                              24


<210>  13
<211>  18
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  13
atcccggacg agccccca                                                     18


<210>  14
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  14
ccggaaaaaa ccttaaacca ccca                                              24


<210>  15
<211>  493
<212>  PRT
<213>  STLV-3 subtype D

<400>  15

Met Gly Lys Ser Ser Leu Phe Ile Cys Leu Phe Cys Ser Tyr Met Ala 
1               5                   10                  15      


Ser Leu Phe Val Pro Gly Asp Pro Ser Arg Cys Thr Leu Phe Ile Gly 
            20                  25                  30          


Ala Ser Ser Tyr His Ser Ser Pro Cys Gly Ser Asn Tyr Pro Gln Cys 
        35                  40                  45              


Thr Trp Thr Leu Asp Leu Val Ser Leu Thr Arg Asp Gln Ser Leu Asn 
    50                  55                  60                  


Pro Pro Cys Pro Asp Leu Val Thr Tyr Ser Gln Tyr His Arg Pro Tyr 
65                  70                  75                  80  


Ser Leu Tyr Leu Phe Pro His Trp Ile Thr Lys Pro Asn Arg Gln Gly 
                85                  90                  95      


Leu Gly Tyr Tyr Ser Ala Ser Tyr Ser Asp Pro Cys Ala Ile Lys Cys 
            100                 105                 110         


Pro Tyr Leu Gly Cys Gln Ser Trp Thr Cys Pro Tyr Thr Gly Pro Met 
        115                 120                 125             


Ser Ser Pro Tyr Trp Lys Tyr Thr Ser Asp Leu Asn Phe Thr Gln Lys 
    130                 135                 140                 


Val Ser Ser Val Thr Leu His Leu His Phe Ser Lys Cys Gly Ser Ser 
145                 150                 155                 160 


Phe Ser Leu Leu Leu Asp Ala Pro Gly Tyr Asp Pro Val Trp Phe Leu 
                165                 170                 175     


Ser Ser Gln Thr Thr Gln Ala Pro Pro Thr Pro Ala Pro Leu Thr Gln 
            180                 185                 190         


Asp Ser Asp Phe Gln His Ile Leu Glu Pro Ser Val Pro Trp Ser Ser 
        195                 200                 205             


Lys Ile Leu Asn Leu Ile Leu Leu Thr Leu Lys Ser Thr Asn Tyr Ser 
    210                 215                 220                 


Cys Met Val Cys Val Asp Arg Ser Ser Leu Ser Ser Trp His Val Leu 
225                 230                 235                 240 


Tyr Asp Pro Leu Lys Val Pro Lys Gln His Glu Pro Arg Ala Arg Ala 
                245                 250                 255     


Leu Leu Arg Pro Ser Leu Ala Ile Pro Ile Thr Asn Thr Thr Pro Pro 
            260                 265                 270         


Phe Pro Trp Ser His Cys Tyr Cys Pro Leu Leu Gln Ala Val Ile Ser 
        275                 280                 285             


Asn Asn Cys Asn Asn Ser Val Ile Leu Pro Pro Phe Ser Leu Ser Pro 
    290                 295                 300                 


Val Leu Asp Leu Ser Lys Pro Arg Gln Arg Arg Ala Val Pro Ile Ala 
305                 310                 315                 320 


Val Trp Leu Val Ser Ala Leu Ala Val Gly Thr Gly Ile Ala Gly Gly 
                325                 330                 335     


Thr Thr Gly Ser Leu Ser Leu Ala Ser Ser Arg Ser Leu Leu His Glu 
            340                 345                 350         


Val Asp Gln Asp Ile Ser His Leu Thr Gln Ala Ile Val Lys Asn His 
        355                 360                 365             


Asn Asn Ile Leu Arg Val Ala Gln Tyr Ala Ala Gln Asn Arg Arg Gly 
    370                 375                 380                 


Leu Asp Leu Leu Phe Trp Glu Gln Gly Gly Leu Cys Lys Ala Ile Arg 
385                 390                 395                 400 


Glu Gln Cys Cys Phe Leu Asn Ile Ser Asn Thr His Val Ser Val Leu 
                405                 410                 415     


Gln Glu Arg Pro Pro Leu Glu Lys Arg Val Ile Thr Gly Trp Gly Leu 
            420                 425                 430         


Asn Trp Asp Leu Gly Leu Ser Gln Trp Ala Arg Glu Ala Leu Gln Thr 
        435                 440                 445             


Gly Ile Thr Leu Leu Ala Leu Phe Leu Leu Leu Ile Met Val Gly Pro 
    450                 455                 460                 


Cys Val Leu Arg Gln Leu Gln Ala Leu Leu Phe Arg Leu Gln His Arg 
465                 470                 475                 480 


Ser His Pro Tyr Ser Leu Leu Asn Arg Glu Thr Asn Leu 
                485                 490             


<210>  16
<211>  420
<212>  PRT
<213>  STLV-3 subtype D

<400>  16

Met Gly Asn Ser Tyr Ser Arg Ala Ala Asn Pro Ile Pro Lys Ala Pro 
1               5                   10                  15      


Lys Gly Leu Ala Ile His His Trp Leu Asn Phe Leu Gln Ala Ala Tyr 
            20                  25                  30          


Arg Leu Gln Pro Gly Pro Ser Glu Phe Asp Phe His Gln Leu Arg Asn 
        35                  40                  45              


Phe Leu Lys Leu Ala Ile Lys Thr Pro Val Trp Leu Asn Pro Ile Asn 
    50                  55                  60                  


Tyr Ser Val Leu Ala Glu Leu Val Pro Lys Asn Tyr Pro Gly Arg Ile 
65                  70                  75                  80  


Gln Glu Ile Ile Ala Ile Leu Ile Gln Glu Thr Ser Thr Gln Glu Val 
                85                  90                  95      


Pro Pro Ser Ala Pro Pro Ala Ser Glu Pro Gln Asn Pro Pro Pro Tyr 
            100                 105                 110         


Pro Glu Pro Gly Gln Ala Ile Pro Gln Cys Leu Pro Val Leu His Pro 
        115                 120                 125             


His Gly Ala Pro Ala Ala His Arg Pro Trp Gln Met Lys Asp Leu Gln 
    130                 135                 140                 


Ala Ile Lys Gln Glu Val Thr Ser Ser Ala Pro Gly Ser Pro Gln Phe 
145                 150                 155                 160 


Met Gln Thr Val Arg Leu Ala Val Gln Gln Phe Asp Pro Thr Ala Lys 
                165                 170                 175     


Asp Leu His Asp Leu Leu Gln Tyr Leu Cys Ser Ser Leu Val Ala Ser 
            180                 185                 190         


Leu His His Gln Gln Leu Glu Thr Leu Ile Ala Gln Ala Glu Thr Gln 
        195                 200                 205             


Gly Ile Thr Gly Tyr Asn Pro Leu Ala Gly Pro Leu Arg Val Gln Ala 
    210                 215                 220                 


Asn Asn Pro Thr Gln Gln Gly Leu Arg Arg Glu Tyr Gln Asn Leu Trp 
225                 230                 235                 240 


Leu Ser Ala Phe Ser Ala Leu Pro Gly Asn Thr Lys Asp Pro Thr Trp 
                245                 250                 255     


Ala Ala Ile Leu Gln Gly Pro Glu Glu Pro Phe Cys Thr Phe Val Glu 
            260                 265                 270         


Arg Leu Asn Val Ala Leu Asp Asn Gly Leu Pro Glu Gly Thr Pro Lys 
        275                 280                 285             


Glu Pro Ile Leu Arg Ser Leu Ala Tyr Ser Asn Ala Asn Lys Glu Cys 
    290                 295                 300                 


Gln Lys Leu Leu Gln Ala Arg Gly Gln Thr Asn Gly Pro Leu Gly Asp 
305                 310                 315                 320 


Met Leu Arg Ala Cys Gln Ala Trp Thr Pro Arg Asp Lys Asn Lys Val 
                325                 330                 335     


Leu Met Val Gln Pro Lys Lys Thr Pro Pro Pro Asn Gln Pro Cys Phe 
            340                 345                 350         


Arg Cys Gly Gln Ala Gly His Trp Ser Arg Asp Cys Lys Gln Pro Arg 
        355                 360                 365             


Pro Pro Pro Gly Pro Cys Pro Leu Cys Gln Asp Pro Thr His Trp Lys 
    370                 375                 380                 


Arg Asp Cys Pro Gln Leu Lys Pro Asp Pro Glu Glu Gly Met Leu Leu 
385                 390                 395                 400 


Asp Leu Pro Cys Glu Asp Pro Ala Ala Arg Asp Gln Lys Asn Phe Ile 
                405                 410                 415     


Gly Gly Glu Asp 
            420 


<210>  17
<211>  176
<212>  PRT
<213>  STLV-3 subtype D

<400>  17

Pro Ser Gly Gln Arg Pro Lys Lys Leu His Arg Gly Gly Gly Leu Ala 
1               5                   10                  15      


Ser Pro Gln Thr Val Leu Pro Phe Ile Pro Leu Ser Gln Gln Lys Gln 
            20                  25                  30          


Pro Val Leu His Val Arg Val Ser Phe Pro Gly Thr Pro Pro Val Ser 
        35                  40                  45              


Ile Gln Ala Leu Leu Asp Thr Gly Ala Asp Val Thr Val Leu Pro Ala 
    50                  55                  60                  


Arg Leu Cys Pro Pro Asp Leu Lys Leu Gln Asp Thr Thr Val Leu Gly 
65                  70                  75                  80  


Ala Ser Gly Pro Ser Thr Asp Lys Phe Lys Val Leu Pro Cys Phe Thr 
                85                  90                  95      


Tyr Val His Leu Pro Phe Arg Gly Arg Pro Val Thr Leu Pro Ser Cys 
            100                 105                 110         


Leu Ile Asp Ile Asn Asn Gln Trp Ala Ile Leu Gly Arg Asp Val Leu 
        115                 120                 125             


Gln Gln Cys Gln Ser Ser Leu Tyr Leu Ala Asp Gln Pro Ser Arg Val 
    130                 135                 140                 


Leu Pro Ile Gln Thr Pro Ser Val Ile Gly Leu Glu His Leu Pro Pro 
145                 150                 155                 160 


Pro Pro Glu Val Pro Gln Phe Pro Leu Asn Gln Ser Ala Ser Arg Pro 
                165                 170                 175     


<210>  18
<211>  880
<212>  PRT
<213>  STLV-3 subtype D

<400>  18

His Trp Ala Gly Thr Ser Pro Pro Ala Pro Arg Ser Ser Thr Ile Ser 
1               5                   10                  15      


Val Lys Pro Glu Arg Leu Gln Ala Leu Thr Asp Leu Val Ser Lys Ala 
            20                  25                  30          


Leu Glu Ala Lys Tyr Ile Glu Pro Tyr Gln Gly Pro Gly Asn Asn Pro 
        35                  40                  45              


Ile Phe Pro Val Lys Lys Pro Asn Gly Lys Trp Arg Phe Ile His Asp 
    50                  55                  60                  


Leu Arg Ala Thr Asn Cys Leu Thr Lys Thr Leu Thr Ser Pro Ser Pro 
65                  70                  75                  80  


Gly Pro Pro Asp Leu Thr Ser Leu Pro Gln Gly Leu Pro His Leu Arg 
                85                  90                  95      


Thr Ile Asp Leu Thr Asp Ala Phe Phe Gln Ile Pro Leu Pro Val Ala 
            100                 105                 110         


Phe Gln Pro Tyr Phe Ala Phe Thr Leu Pro Gln Pro Asn Asn His Gly 
        115                 120                 125             


Pro Gly Ala Arg Tyr Ser Trp Lys Val Leu Pro Gln Gly Phe Lys Asn 
    130                 135                 140                 


Ser Pro Thr Leu Phe Glu Gln Gln Leu Ser His Ile Leu Thr Pro Val 
145                 150                 155                 160 


Arg Gln Ala Phe Pro Lys Ser Ile Val Ile Gln Tyr Met Asp Asp Ile 
                165                 170                 175     


Leu Leu Ala Ser Pro Thr Leu Glu Glu Ser Ile Val Leu Ala Gln Glu 
            180                 185                 190         


Ile Thr Asn Ala Leu Ala Gln Glu Gly Leu Pro Met Ser Thr Glu Lys 
        195                 200                 205             


Thr Gln Ser Thr Pro Gly Pro Ile His Phe Leu Gly Gln Thr Ile Ser 
    210                 215                 220                 


Lys Lys Tyr Ile Thr Tyr Glu Thr Leu Pro Thr Ile His Val Lys Pro 
225                 230                 235                 240 


Asn Trp Thr Leu Thr Glu Leu Gln Ser Thr Leu Gly Glu Leu Gln Trp 
                245                 250                 255     


Val Ser Lys Gly Thr Pro Thr Leu Arg Ser Ser Leu His Gln Leu Tyr 
            260                 265                 270         


Thr Ala Leu Arg Gly His His Asp Pro Arg Asp Thr Ile Gln Leu Thr 
        275                 280                 285             


Pro Pro Gln Leu Gln Ala Leu Asn Thr Leu Gln Lys Ala Leu Thr His 
    290                 295                 300                 


Asn Cys Arg Ser Arg Ile Val Ser Asn Leu Pro Ile Leu Ala Leu Ile 
305                 310                 315                 320 


Met Leu Arg Pro Thr Gly Thr Thr Ala Val Leu Phe Gln Thr Lys Gln 
                325                 330                 335     


Lys Trp Pro Leu Val Trp Leu His Thr Pro His Pro Ala Thr Ser Leu 
            340                 345                 350         


Arg Leu Trp Gly Gln Leu Leu Ala Asn Ala Ile Ile Thr Leu Asp Lys 
        355                 360                 365             


Tyr Ser Leu Gln His Tyr Gly Gln Val Cys Lys Ser Phe His His Asn 
    370                 375                 380                 


Ile Ser Asn Gln Ala Leu Thr His Tyr Leu His Thr Ser Asp Gln Ser 
385                 390                 395                 400 


Ser Val Ala Ile Leu Leu Gln His Ser His Arg Phe His Asn Leu Gly 
                405                 410                 415     


Ala Gln Pro Ser Gly Pro Trp Lys Gly Leu Leu Gln Val Pro Gln Ile 
            420                 425                 430         


Phe Gln Asn Val Ala Thr Leu Ser Pro Pro Phe Thr Ile Ser Pro Val 
        435                 440                 445             


Val Ile Asn His Ala Pro Cys Leu Phe Ser Asp Gly Ser Asn Ser Gln 
    450                 455                 460                 


Ala Ala Phe Thr Ile Trp Asp Lys Lys Ile Ile His Gln Gln Val Leu 
465                 470                 475                 480 


Pro Leu Pro Thr Ala Ser Ser Ala Gln Ala Gly Glu Leu Phe Ala Leu 
                485                 490                 495     


Leu Ala Ala Leu Arg Glu Cys Lys Pro Trp Ser Ser Leu Asn Ile Phe 
            500                 505                 510         


Leu Asp Ser Lys Phe Leu Val Gly Gln Leu Arg Arg Leu Ala Leu Gly 
        515                 520                 525             


Ala Phe Ile Gly Pro Ser Thr Gln Cys Asp Leu His Ser Gln Leu Leu 
    530                 535                 540                 


Pro Leu Leu Tyr Asn Lys Thr Ile Tyr Val His His Val Arg Ser His 
545                 550                 555                 560 


Thr Leu Leu Gln Asp Pro Ile Ser Arg Leu Asn Glu Ala Thr Asp Ala 
                565                 570                 575     


Leu Met Leu Ala Pro Leu Leu Pro Leu Ser Pro Ala Thr Leu His Glu 
            580                 585                 590         


Ile Thr His Cys Asn Pro Pro Ala Leu Cys Asn His Gly Ala Thr Ala 
        595                 600                 605             


Thr Glu Thr Lys Ala Ile Val Arg Ala Cys His Thr Cys Lys Ile Thr 
    610                 615                 620                 


Asn Pro Gln Gly Arg Leu Pro Gln Gly His Ile Arg Arg Gly His Ala 
625                 630                 635                 640 


Pro Asn Thr Ile Trp Gln Gly Asp Val Thr His Leu Gln Tyr Lys Lys 
                645                 650                 655     


Tyr Lys Tyr Cys Leu Leu Val Trp Val Asp Thr Tyr Ser Gly Ala Val 
            660                 665                 670         


Ala Val Ser Cys Arg Arg Lys Glu Thr Ser Ser Glu Cys Val Ala Ser 
        675                 680                 685             


Leu Leu Ala Ala Ile Ser Ile Leu Gly Lys Pro His Thr Ile Asn Thr 
    690                 695                 700                 


Asp Asn Gly Ala Ala Tyr Leu Ser Gln Glu Phe Gln Gln Phe Cys Thr 
705                 710                 715                 720 


Ser Leu Ser Ile Lys His Thr Thr His Val Pro Tyr Asn Pro Thr Ser 
                725                 730                 735     


Ser Gly Leu Val Glu Arg Thr Asn Gly Ile Leu Lys Thr Leu Ile Ser 
            740                 745                 750         


Lys Tyr Leu Leu Asp Asp His His Leu Pro Leu Asp Thr Ala Ile Ser 
        755                 760                 765             


Lys Thr Leu Trp Thr Ile Asn His Leu Asn Val Leu Ser Ser Cys Gln 
    770                 775                 780                 


Lys Thr Arg Trp Gln Leu His Gln Ala Gln Pro Leu Pro Pro Val Pro 
785                 790                 795                 800 


Glu Asn Leu Pro Leu Pro Glu Pro Val Pro Lys Trp Tyr Tyr Tyr Lys 
                805                 810                 815     


Ile Pro Gly Leu Thr Ser Ser Arg Trp Ser Gly Pro Val Gln Ser Val 
            820                 825                 830         


Lys Glu Ala Ala Gly Ala Ala Leu Ile Pro Val Gly Thr Arg His Ile 
        835                 840                 845             


Trp Ile Pro Trp Arg Leu Leu Lys Arg Gly Ala Cys Pro Arg Pro Gly 
    850                 855                 860                 


Asp Ser Val Thr Thr Glu Ser Lys His Lys Asp Leu Gln Leu His Gly 
865                 870                 875                 880 


<210>  19
<211>  182
<212>  PRT
<213>  STLV-3 subtype D

<400>  19

Met Pro Lys Thr Arg Arg Gln Arg Asn His Arg Ile Lys Thr Gln Arg 
1               5                   10                  15      


Pro Ser Thr Pro Trp Pro Thr Phe Gln Val Ser Gly Arg Ala Cys Ser 
            20                  25                  30          


Thr Gly Thr Leu Ser Thr Phe Ser Ala Ile Val Cys Arg Pro Ile Gly 
        35                  40                  45              


Ala Pro Phe Pro Gly Gly Phe Val Pro Pro Gly Tyr Ile Gly Thr Pro 
    50                  55                  60                  


Tyr Trp Pro Pro Val Leu Asn Thr Arg Ser Pro Gly Thr Pro Ser Met 
65                  70                  75                  80  


Asp Ala Leu Ser Ala Arg Leu Tyr Asn Thr Leu Ser Leu Ala Ser Pro 
                85                  90                  95      


Pro Ser Pro Pro Lys Glu Leu Pro Ala Pro Ser Arg Ser Ser Pro Arg 
            100                 105                 110         


Arg Pro Leu Leu Gln Pro Pro Lys Phe Leu Pro Pro Ser Ser Met Gln 
        115                 120                 125             


Ser Gly Asn Thr Pro Leu Ser Glu Thr Thr Ala Ser Ser Ser Pro Trp 
    130                 135                 140                 


Glu Ser Asn Tyr Pro Pro Cys Leu Ser Pro Thr Pro Ala Ser Asp Pro 
145                 150                 155                 160 


Lys Met Ser Ile Pro Cys Gly Glu Ala Pro Ser Cys Ala Tyr Thr Ser 
                165                 170                 175     


Thr Asn Ser His Leu Gln 
            180         


<210>  20
<211>  350
<212>  PRT
<213>  STLV-3 subtype D

<400>  20

Met Ala His Phe Pro Gly Phe Gly Gln Ser Leu Leu Tyr Gly Tyr Pro 
1               5                   10                  15      


Val Tyr Val Phe Gly Asp Cys Val Gln Ala Asp Trp Cys Pro Ile Ser 
            20                  25                  30          


Gly Gly Leu Cys Ser Ala Arg Leu His Arg His Ala Leu Leu Ala Thr 
        35                  40                  45              


Cys Pro Glu His Gln Ile Thr Trp Asp Pro Ile Asp Gly Arg Val Val 
    50                  55                  60                  


Ser Ser Pro Leu Gln Tyr Leu Ile Pro Arg Leu Pro Ser Phe Pro Thr 
65                  70                  75                  80  


Gln Arg Thr Ser Arg Thr Leu Lys Val Leu Thr Pro Pro Pro Thr Ala 
                85                  90                  95      


Thr Thr Pro Lys Val Pro Pro Ser Phe Phe His Ala Val Arg Lys His 
            100                 105                 110         


Thr Pro Phe Arg Asn Asn Cys Leu Glu Leu Thr Leu Gly Glu Gln Leu 
        115                 120                 125             


Pro Ala Met Ser Phe Pro Asp Pro Gly Leu Arg Pro Gln Asn Val Tyr 
    130                 135                 140                 


Thr Met Trp Gly Ser Thr Ile Val Cys Leu Tyr Leu Tyr Gln Leu Thr 
145                 150                 155                 160 


Pro Pro Met Thr Trp Pro Leu Ile Pro His Val Ile Phe Cys His Pro 
                165                 170                 175     


Asp Gln Leu Gly Ala Phe Leu Thr Lys Ile Pro Thr Lys Arg Leu Glu 
            180                 185                 190         


Glu Leu Leu Tyr Lys Leu Phe Leu Ser Thr Gly Ala Ile Leu Ile Leu 
        195                 200                 205             


Pro Glu Asn Cys Phe Pro Thr Thr Leu Phe Gln Pro Thr Arg Ala Pro 
    210                 215                 220                 


Val Ile Gln Ala Pro Trp His Ser Gly Leu Leu Pro Tyr Leu Lys Glu 
225                 230                 235                 240 


Ile Val Thr Pro Gly Leu Ile Trp Val Phe Thr Asp Gly Ser Ser Met 
                245                 250                 255     


Ile Ser Gly Pro Cys Pro Lys Glu Gly Gln Pro Ser Leu Val Val Gln 
            260                 265                 270         


Ser Ser Thr Phe Ile Phe Gln Lys Phe Gln Thr Lys Ala Tyr His Pro 
        275                 280                 285             


Ala Phe Leu Leu Ser His Lys Leu Ile Gln Tyr Ser Ser Phe His Ser 
    290                 295                 300                 


Leu His Leu Leu Phe Glu Glu Tyr Thr Thr Val Pro Phe Ser Leu Leu 
305                 310                 315                 320 


Phe Asn Glu Lys Glu Ala Asn Asp Ser Asp Ser Lys Pro Gln Gly Glu 
                325                 330                 335     


Pro Gln Leu Leu Ala Lys Gly His Thr Val Glu Ser Ser Val 
            340                 345                 350 


<210>  21
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  21
ccctcaaggt cctcaccccg ccgc                                              24


<210>  22
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  22
taacggccag gtcattggag gtgt                                              24


<210>  23
<211>  24
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  23
aagttcctcc ctccttcttc catg                                              24


<210>  24
<211>  27
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Synthetic oligonucleotide primer.

<400>  24
tggtagaggt ataagcacac gatggtg                                           27


<210>  25
<211>  1053
<212>  DNA
<213>  STLV-3 subtype D

<400>  25
atggcccact ttccaggttt cgggcagagc ctgctctacg ggtaccctgt ctacgttttc       60

ggcgattgtg tgcaggccga ttggtgcccc atttccgggg ggctttgttc cgcccggcta      120

catcggcacg ccttactggc cacctgtcct gaacaccaga tcacctggga ccccatcgat      180

ggacgcgttg tcagctcgcc tctacaatac cttatccctc gcctcccctc cttccccacc      240

caaagaactt cccgcaccct caaggtcctc accccgccgc ccactgctac aacccccaaa      300

gttcctccct ccttcttcca tgcagtcagg aaacacaccc ctttccgaaa caactgcctc      360

gagctcacct tgggagagca actacccgcc atgtctttcc ccgaccccgg cctccgaccc      420

caaaatgtct ataccatgtg gggaagcacc atcgtgtgct tatacctcta ccaactcaca      480

cctccaatga cctggccgtt aatcccacat gtcatttttt gccatccgga ccaactaggg      540

gccttcctaa caaaaatccc taccaaacgc ttggaagaac tcttatacaa actattctta      600

agtacagggg ccatacttat cctacctgaa aattgcttcc caactaccct gtttcagccc      660

acccgcgcac cagtaattca agccccctgg cactcaggcc tactcccata cctaaaggaa      720

attgtcaccc ccgggctgat ttgggtgttt actgacggta gttctatgat ttccggaccc      780

tgccccaagg aagggcagcc atctttggtg gtccaatcat ctacattcat tttccaaaaa      840

tttcaaacca aagcctatca cccagccttc ctcctgtccc ataaattaat ccaatactcc      900

tcgttccatt ccctccatct actttttgaa gaatacacca ctgtcccctt ttctttattg      960

tttaacgaaa aagaggcaaa tgacagtgac agcaagcccc aaggcgagcc acaactacta     1020

gccaaagggc atacagttga atcatctgtc tag                                  1053


<210>  26
<211>  549
<212>  DNA
<213>  STLV-3 subtype D

<400>  26
atgcccaaga cccggagaca gcgtaaccac cgaatcaaaa cacaaagacc ttcaactcca       60

tggcccactt tccaggtttc gggcagagcc tgctctacgg gtaccctgtc tacgttttcg      120

gcgattgtgt gcaggccgat tggtgcccca tttccggggg gctttgttcc gcccggctac      180

atcggcacgc cttactggcc acctgtcctg aacaccagat cacctgggac cccatcgatg      240

gacgcgttgt cagctcgcct ctacaatacc ttatccctcg cctcccctcc ttccccaccc      300

aaagaacttc ccgcaccctc aaggtcctca ccccgccgcc cactgctaca acccccaaag      360

ttcctccctc cttcttccat gcagtcagga aacacacccc tttccgaaac aactgcctcg      420

agctcacctt gggagagcaa ctacccgcca tgtctttccc cgaccccggc ctccgacccc      480

aaaatgtcta taccatgtgg ggaagcacca tcgtgtgctt atacctctac caactcacac      540

ctccaatga                                                              549


