                         SEQUENCE LISTING

<110>  HELLYER, Tobin J.
       PRICE, JR., James A.
       JONES, Erika L.
 
<120>  SEQUENCES AND METHODS FOR DETECTING INFLUENZA A AND INFLUENZA B 
       VIRUS

<130>  2411-0112PUS1

<160>  77    

<170>  PatentIn version 3.3

<210>  1
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: BsoBI restriction enzyme recognition site 

<400>  1
ctcggg                                                                 6


<210>  2
<211>  6
<212>  DNA
<213>  Artificial Sequence

<220>  
<221>  misc_feature
<222>  (4)..(6)
<223>  Description of Artificial Sequence: Modified BsoB1 site with phosphorothioate linkages

<400>  2
gagnnn                                                                 6


<210>  3
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' bumper primer

<400>  3
tcaggccccc tcaaagc                                                    17


<210>  4
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 3' bumper primer

<400>  4
ggcacggtga gcgtgaa                                                    17


<210>  5
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B 5' bumper primer

<400>  5
tgtcgctgtt tggagac                                                    17


<210>  6
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B 3' bumper primer

<400>  6
aggcaccaat tagtgctt                                                   18


<210>  7
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' amplification primer

<400>  7
cgattccgct ccagacttct cgggaggctc tcatggaat                            39


<210>  8
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 3' amplification primer

<400>  8
accgcatcga atgactgtct cgggccctta gtcagaggt                            39


<210>  9
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B 5' amplification primer

<400>  9
accgcatcga atgactgtct cgggctttcc caccgaacc                            39


<210>  10
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B 3' amplification primer

<400>  10
cgattccgct ccagacttct cgggattgcc tacctgcttt                           40


<210>  11
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A adapter primer for universal detection of influenza A RNA

<400>  11
acgttagcca ccatacttga gacaggattg gtcttgtctt t                         41


<210>  12
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B signal primer for universal detection of influenza B RNA 

<400>  12
acgttagcca ccatacttga gttctgcttt gccttctcca tc                        42


<210>  13
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A signal primer for detection of internal control RNA 

<400>  13
actgatccgc actaacgact gacaggattg gtctatctac a                         41


<210>  14
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B signal primer for detection of internal control RNA 

<400>  14
actgatccgc actaacgact agttctgctt tgccttccac ct                        42


<210>  15
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Target Reporter Probe 

<400>  15
tccccgagta cgttagccac catacttga                                       29


<210>  16
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Internal Control Reporter Probe

<400>  16
tccccgagta ctgatccgca ctaacgact                                       29


<210>  17
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' Amplification primer #2

<400>  17
cgattccgct ccagacttct cgggaggctc tcatggagt                            39


<210>  18
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' Amplification primer #2

<400>  18
cgattccgct ccagacttct cgggtgaggc tctcatgga                            39


<210>  19
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' target sequence

<400>  19
aggctctcat ggaat                                                      15


<210>  20
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 3' target sequence

<400>  20
cccttagtca gaggt                                                      15


<210>  21
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B 5' target sequence

<400>  21
ctttcccacc gaacc                                                      15


<210>  22
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza B 3' target sequence

<400>  22
attgcctacc tgcttt                                                     16


<210>  23
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' target sequence

<400>  23
aggctctcat ggagt                                                      15


<210>  24
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Influenza A 5' target sequence

<400>  24
tgaggctctc atgga                                                      15


<210>  25
<211>  719
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Fig. 3 - influenza A matrix gene 

<400>  25
atgagccttc taaccgaggt cgaaacgtgt gttctctcta tcgttccatc aggccccctc     60

aaagccgaaa tcgcgcagag acttgaagat gtctttgctg ggaaaaacac agatcttgag    120

gctctcatgg aatggctaaa gacaagacca attctgtcac ctctgactaa ggggattttg    180

gggtttgtgt tcacgctcac cgtgcccagt gagcgaggac tgcagcgtag acgctttgtc    240

caaaatgccc tcaatgggaa tggggatcca aataacatgg acaaagcagt taaactgtat    300

agaaaactta agagggagat aacattccat ggggccaaag aaatagcact cagttattct    360

gctggtgcac ttgctagttg catgggcctc atatacaata ggatgggggc tgtaaccacc    420

gaagtggcat ttggcctggt atgtgcaaca tgtgaacaga ttgctgactc ccagcacagg    480

tctcataggc aaatggtggc aacaaccaat ccattaataa aacatgagaa cagaatggtt    540

ttggccagca ctacagctaa agctatggag caaatggctg gatcaagtga gcaggcagcg    600

gaggccatgg agattgctag tcaggccagg caaatggtgc aggcaatgag aaccgttggg    660

actcatccta gttccagtac tggtctaaga gatgatcttc ttgaaaattt gcagaccta     719


<210>  26
<211>  891
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Fig. 4 - influenza B matrix gene 

<400>  26
atgtcgctgt ttggagacac aattgcctac ctgctttcat tgacagaaga tggagaaggc     60

aaagcagaac tagcagaaaa attacactgt tggttcggtg ggaaagaatt tgacctagac    120

tctgccttgg aatggataaa aaacaaaaga tgcttaactg atatacaaaa agcactaatt    180

ggtgcctcta tatgcttttt aaaacccaaa gaccaggaaa ggaaaagaag attcatcaca    240

gagcctctat caggaatggg aacaacagca acaaaaaaga aaggcctgat tctagctgag    300

agaaaaatga gaagatgtgt gagctttcat gaagcatttg aaatagcaga aggccatgaa    360

agctcagcgc tactgtattg tctcatggtc atgtacctga atcctggaaa ttattcaatg    420

caagtaaaac taggaacgct ctgtgctttg tgcgagaaac aagcatcaca ttcacacagg    480

gctcatagca gagcagcgag atcttcagtg cccggagtga gacgagaaat gcagatggtc    540

tcagctatga acacagcaaa aacaatgaat ggaatgggaa aaggagaaga cgtccaaaag    600

ctggcagaag agctgcaaag caacattgga gtgttgagat ctctcggagc aagtcaaaag    660

aatggggaag gaattgcaaa ggatgtaatg gaagtgctaa agcagagctc tatgggaaat    720

tcagctcttg tgaagaaata tctataatgc tcgaaccatt tcagattctt tcaatttgtt    780

cttttatctt atcagctctc cacttcatgg cttggacaat agggcatttg aatcaaataa    840

aaagaggagt aaacatgaaa atacgaataa aaggtccaaa caaagagaca a             891


<210>  27
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  27
tcaggccccc tcaaag                                                     16


<210>  28
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  28
tcgggccccc tcaaag                                                     16


<210>  29
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  29
tcgggccccc tcaaaa                                                     16


<210>  30
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  30
tcaggccccc tcaaaa                                                     16


<210>  31
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  31
gaggctctca tggaatgg                                                   18


<210>  32
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  32
gaagctctca tggaatgg                                                   18


<210>  33
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  33
gaagttctca tggaatgg                                                   18


<210>  34
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  34
gaagcactca tggaatgg                                                   18


<210>  35
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  35
gaagctctca tggagtgg                                                   18


<210>  36
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  36
gaagtactca tggaatgg                                                   18


<210>  37
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  37
gaagtactca tggagtgg                                                   18


<210>  38
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  38
gaagcactca tggagtgg                                                   18


<210>  39
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  39
gaagttctca tggagtgg                                                   18


<210>  40
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  40
gaggttctca tggaatgg                                                   18


<210>  41
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  41
gaggtactca tggaatgg                                                   18


<210>  42
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  42
gaggttctca tggagtgg                                                   18


<210>  43
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  43
gaggtactca tggagtgg                                                   18


<210>  44
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  44
gaggcactca tggaatgg                                                   18


<210>  45
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  45
gaggcactca tggagtgg                                                   18


<210>  46
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  46
gaggctctca tggagtgg                                                   18


<210>  47
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  47
aaagacaaga ccaatcctgt cacctc                                          26


<210>  48
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  48
aaagacaaga ccgatcctgt cacctc                                          26


<210>  49
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  49
aaagacaaga ccgattctgt cacctc                                          26


<210>  50
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  50
aaagacaaga ccgatcttgt cacctc                                          26


<210>  51
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  51
aaagacaaga ccgatcctgt cacctt                                          26


<210>  52
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  52
aaagacaaga ccgattttgt cacctc                                          26


<210>  53
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  53
aaagacaaga ccgattttgt cacctt                                          26


<210>  54
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  54
aaagacaaga ccgattctgt cacctt                                          26


<210>  55
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  55
aaagacaaga ccgatcttgt cacctt                                          26


<210>  56
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  56
aaagacaaga ccaattctgt cacctc                                          26


<210>  57
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  57
aaagacaaga ccaattttgt cacctc                                          26


<210>  58
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  58
aaagacaaga ccaattttgt cacctt                                          26


<210>  59
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  59
aaagacaaga ccaattctgt cacctt                                          26


<210>  60
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  60
aaagacaaga ccaatcttgt cacctc                                          26


<210>  61
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  61
aaagacaaga ccaatcttgt cacctt                                          26


<210>  62
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  62
aaagacaaga ccaatcctgt cacctt                                          26


<210>  63
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  63
tgggcacggt gagcgt                                                     16


<210>  64
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  64
tgggcacggt gagtgt                                                     16


<210>  65
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  65
gcacggtgag cgtgaa                                                     16


<210>  66
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  66
gcacggtgag tgtgaa                                                     16


<210>  67
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  67
gcacggtgag tgtaaa                                                     16


<210>  68
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  68
gcacggtgag cgtaaa                                                     16


<210>  69
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  69
tgtcgctgtt tggagacac                                                  19


<210>  70
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  70
atggagaagg caaagcagaa ctag                                            24


<210>  71
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  71
atggagaagg caaagcagag ctag                                            24


<210>  72
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  72
atggagaagg caaagcagag ttag                                            24


<210>  73
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       probe

<400>  73
atggagaagg caaagcagaa ttag                                            24


<210>  74
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  74
ttctttccca ccgaacca                                                   18


<210>  75
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  75
ctctttccca ccgaacca                                                   18


<210>  76
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  76
ctctttccca ccaaacca                                                   18


<210>  77
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Description of Artificial Sequence: Synthetic PCR oligonucleotide
       primer

<400>  77
ttctttccca ccaaacca                                                   18




