                         SEQUENCE LISTING

<110>  UNIVERSITA' DEGLI STUDI DI TRIESTE
 
<120>  Method for distinguishing between the species Coffea arabica and 
       Coffea canephora and hybrids thereof based on the concomitant 
       analysis of nuclear and chloroplastic DNA polymorphisms

<130>  8840PTWO

<150>  PD2008A000307
<151>  2008-10-27

<160>  8     

<170>  PatentIn version 3.5

<210>  1
<211>  261
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(261)
<223>  polymorphic insertion after nucletide 87 (starting at position 
       88)

<400>  1
cgtcaaggga ggaaaagaga agggtttgga aatggttaag gctgttgagg cttacctcca       60

cgcaaatcct actgcctaca actaattata ttttcttcaa gattgaagta taaactgagg      120

gtgtctgttt ccttttttgc ttggtttgct ttaagctgtt tggttgagtt atttgcagct      180

atgatcataa tatttgatcg aagtgtgctt ttcttgcaac ctttgtatcg ttacaaggaa      240

taaaatcttg tttggagctt t                                                261


<210>  2
<211>  30
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(30)
<223>  insertion, repetition or deletion in RM018

<400>  2
ataatgaatg ctactgaagg actcttcgac                                        30


<210>  3
<211>  21
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  PCR primer forward

<400>  3
tggaaatggt taaggctgtt g                                                 21


<210>  4
<211>  25
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(25)
<223>  PCR primer reverse

<400>  4
agctccaaac aagattttat tcctt                                             25


<210>  5
<211>  864
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(864)
<223>  Chloroplast DNA: polymorphic insertion /repetition at position 
       393 (after nucleotide 392)

<400>  5
tcacaaaata aaaagaaaag ccattccatt tcgacaaaag accgacaccc aagttccata       60

gcttttggtc cgctatcccc accattctac ccccagaggg aagggtactt cccccttggg      120

ccggttgtgg gcgaggaggg attcgaaccc ccgacaccgt ggttcgtagc cacgtgctct      180

aatcctctga gctacaggcc ccacctcgtc tccactggat atgttaccgg gagtaccctc      240

aaaaaaggga ctcctctccc cagccatttc gggttaagaa gatgtgaaag cgcgtttatc      300

tctataagaa cggtgcgttc cgaggtgtga agtgggagag aagggatgtc ataattgggg      360

ttttgaataa gacgaccttt ttctttttca ttaatgagag gtcttaagct ttttatcatc      420

ctggcgtcga gctatttttc cgcaggacct cccctacagt atcgtcaccg cagtagagtt      480

taaccaccaa gttcgggatg gattggtgtg gttcctctac gcctaggaca ccagaatatc      540

gaatcctgaa cgaagaaagg catgagagaa aagtatattg gctagtgatt atgaggtccc      600

aattcttgac tgggggggac accaaaggcc tctgcccttc catcccttag atagagaggg      660

agggcggagc ttttggtttt ttcatgttgt caaagagttg aacaatgttt tttcatgttg      720

tcaaagattt gaacaatgaa aatagatggc gagtgcctga tcgaattgat caggtcatgt      780

aggaacaagg ttcaagtcta ccggtctgtt aggatgcctc agctgcatac atcactgcac      840

ttccacttga cacctatcgt aatg                                             864


<210>  6
<211>  32
<212>  DNA
<213>  Coffea arabica


<220>
<221>  satellite
<222>  (1)..(32)
<223>  insertion repetition or deletion

<400>  6
ttttcgtttt catatattga aaaagtaata ag                                     32


<210>  7
<211>  21
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(21)
<223>  forward primer P-AC

<400>  7
ttggggtttt gaataagacg a                                                 21


<210>  8
<211>  20
<212>  DNA
<213>  Coffea arabica


<220>
<221>  misc_feature
<222>  (1)..(20)
<223>  PCR primer reverse

<400>  8
acgccaggat gataaaaagc                                                   20

