
                                SEQUENCE LISTING

<110> GENEOHM SCIENCES, INC.
      Catherine Lippe
      Isabelle Duteaud
      Celine Roger-Dalbert

<120> METHODS FOR THE DETECTION AND
  IDENTIFICATION OF EXTENDED SPECTRUM BETA LACTAMASES
  

<130> GENOM.097VPC

<150> 61/153954           
<151> 2009-02-19  

<160> 51

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<400> 1
cygcttcctg ggttgtgg                                               18

<210> 2
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 2
ttgrggctgg gtgaagtaag                                             20

<210> 3
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> m = a or c
      

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> s = g or c

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> w = a or t

<400> 3
ggtmtgccga aatswtgg                                               18

<210> 4
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> h = a, c or t

<400> 4
cgcagccaga ahatcccgac                                             20

<210> 5
<211> 37
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<400> 5
ccagcgtatg gyaccaccaa cgatatcgcg gcgctgg                          37

<210> 6
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> s = g or c

<400> 6
tgtrtgcsca ggcgaacg                                               18

<210> 7
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<400> 7
gtagagcgtc tgtgygttat cg                                          22

<210> 8
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 8
tttatgcgca gacgagtg                                               18

<210> 9
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 9
aaagcacctg cgtattatct                                             20

<210> 10
<211> 32
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 10
cgaggcgcgg cgctggaraa aagcaggcct cg                               32

<210> 11
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> w = a or t

<400> 11
gyattcaggc wggactgcc                                              19

<210> 12
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 12
gggggataaa accggcag                                               18

<210> 13
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 13
gctttctgcc ttaggttgrg                                             20

<210> 14
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 14
artgaccaga atcagcggc                                              19

<210> 15
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 15
tagcgcgagc attcrggc                                               18

<210> 16
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> k = g or t

<400> 16
tgggkagtgg gcgataaa                                               18

<210> 17
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 17
tacgattttc gccgccgcag                                             20

<210> 18
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<400> 18
gacggytttc cgccttct                                               18

<210> 19
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> s = g or c

<400> 19
ygccgctgtr tgcscaggc                                              19

<210> 20
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> s = g or c

<400> 20
acgaygttca rcaaaagc                                               18

<210> 21
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 21
ctcrtcggcg cggtagagc                                              19

<210> 22
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<400> 22
tatcggcggt gtyaatcarc g                                           21

<210> 23
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> m = a or c

<400> 23
crmcgcttta tgcgcagac                                              19

<210> 24
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> r = g or a

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> k = g or t

<400> 24
artgcggkgc arcaaaag                                               18

<210> 25
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> k = g or t

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> y = t or c

<400> 25
tatctkyggt atcgatgagc                                             20

<210> 26
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 26
gttcatcacc gcgataaagc                                             20

<210> 27
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 27
cagcaccagt aargtgatg                                              19

<210> 28
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 28
ttgtagttaa ycargtcyga rg                                          22

<210> 29
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 29
cggtgatgaa cgctttcc                                               18

<210> 30
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 30
atcggcaggc ttgatctc                                               18

<210> 31
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 31
cggcgataag caragtgaaa cgcaaaagat cgccg                            35

<210> 32
<211> 17
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 32
ccaccaacga tatcgcg                                                17

<210> 33
<211> 24
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 33
tggyaccacc aacgatatcg cggt                                        24

<210> 34
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 34
aactgacact gggctctg                                               18

<210> 35
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 35
atacmctccg caggttcc                                               18

<210> 36
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 36
cgcgatcaca cgaccggcaa ccaccgcaga tcgcg                            35

<210> 37
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 37
gatrgatacc ggctcagg                                               18

<210> 38
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 38
gtaacggatg ggtgtgtc                                               18

<210> 39
<211> 34
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 39
cgcgatcgct gccgctgtgc tggctcggat cgcg                             34

<210> 40
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 40
gacgatgtca ctggctgagc                                             20

<210> 41
<211> 19
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 41
agccgccgac gctaataca                                              19

<210> 42
<211> 22
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 42
gcgacctggt taactacaat cc                                          22

<210> 43
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 43
cggtagtatt gcccttaagc c                                           21

<210> 44
<211> 21
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 44
cgctttgcca tgtgcagcac c                                           21

<210> 45
<211> 18
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 45
gctcagtacg atcgagcc                                               18

<210> 46
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 46
gctggagaaa agcagcggag                                             20

<210> 47
<211> 20
<212> DNA
<213> Artificial Sequence

<220> 
<223> Synthetic oligonucleotide

<400> 47
gtaagctgac gcaacgtctg                                             20

<210> 48
<211> 806
<212> DNA
<213> Artificial Sequence

<220> 
<223> Consensus DNA sequence

<220> 
<221> misc_feature   
<222> (0)...(0)
<223> n = a, t, c or g

<400> 48
tgccgctgta tgcgcaaacg gcggacgtac agcaaaaact tgccgaatta gagcggcagt 60
cgggaggcag actgggtgtg gcattgatta acacagcaga taattcgcaa atactttatc 120
gtgctgatga gcgctttgcg atgtgcagca ccagtaaagt gatggccgcg gccgcggtgc 180
tgaagaaaag tgaaagcgaa ccgaatctgt taaatcagcg agttgagatc aaaaaatctg 240
acctggttaa ctataatncc gattgcggaa aagcacgtca atgggacgat gtcactggct 300
gagcttagcg cggccgcgct acagtacagc gataacgtgg cgatgaataa gctgattgct 360
cacgttggcg gcccggctag cgtcaccgcg ttcgcccgac agctgggaga cgaaacgttc 420
cgtgtcgacc gtaccgagcc gacgttaaac accgccattc cgggcgatcc gcgtgatacc 480
acttcacctc gggcaatggc gcaaactctg cggaatctga cgctgggtaa agcattgggc 540
gacagccaac gggcgcagct ggtgacatgg atgaaaggca ataccaccgg tgcagcgagc 600
attcaggctg gactgcctgc ttcctgggtt gtgggggata aaaccggcag cggtgactat 660
ggcaccacca acgatatcgc ggtgatctgg ccaaaagatc gtgcgccgct gattctggtc 720
acttacttca cccagcctca acctaaggca gaaagccgtc gcgatgtatt agcgtcggcg 780
gctaaaatcg tcaccacggt ttgtaa                                      806

<210> 49
<211> 806
<212> DNA
<213> Artificial Sequence

<220> 
<223> Consensus DNA sequence

<400> 49
caacgctgca tgcgcaggcg aacagcgtgc aacagcagct ggaagccctg gagaaaagtt 60
cgggaggtcg gcttggcgtt gcgctgatta acaccgccga taattcgcag attctctacc 120
gtgccgatga acgttttgcg atgtgcagta ccagtaaggt gatggcggcc gcggcggtgc 180
ttaaacagag cgagagcgat aagcacctgc taaatcagcg cgttgaaatc aagaagagcg 240
acctggttaa ctacaatccc attgcggaga aacacgttaa cggcacgatg acgctggctg 300
agcttggcgc agcggcgctg cagtatagcg acaatactgc catgaataag ctgattgccc 360
atctgggtgg tcccgataaa gtgacggcgt ttgctcgctc gttgggtgat gagaccttcc 420
gtctggacag aaccgagccc acgctcaata ccgccattcc aggcgacccg cgtgatacca 480
ccacgccgct cgcgatggcg cagaccctga aaaatctgac gctgggtaaa gcgctggcgg 540
aaactcagcg ggcacagttg gtgacgtggc ttaagggcaa tactaccggt agcgcgagca 600
ttcgggcggg tctgccgaaa tcatgggtag tgggcgataa aaccggcagc ggagattatg 660
gcaccaccaa cgatatcgcg gttatctggc cggaaaacca cgcaccgctg gttctggtga 720
cctactttac ccaaccggag cagaaggcgg aaagccgtcg ggatattctg gctgcggcgg 780
cgaaaatcgt aacccacggt ttctga                                      806

<210> 50
<211> 806
<212> DNA
<213> Artificial Sequence

<220> 
<223> Consensus DNA sequence

<400> 50
tgccgctgtg tgcccaggcg aacgatgttc aacaaaagct cgcggcgctg gagaaaagca 60
gcgggggacg actgggtgtg gcgttgatta acaccgccga taacacgcag acgctctacc 120
gcgccgacga gcgttttggc catgtgcagc accagtaaag tgatggcggc agcggcggtg 180
ttaagcaaag tgaaacgcaa aagggcttgt tgagtcagcg ggttgaaatt aagccctcag 240
acttgattaa ctacaacccc attgcggaaa aacacgtcaa tggcacgatg acattcgggg 300
agttgagcgc ggcggcgcta cagtacagcg ataatactgc catgaataag ctgattgccc 360
atctcggggg gccggataaa gtgacggcat ttgcccgtac gattggcgat gacacgttcc 420
ggctcgatcg taccgagccg acgctcaaca ccgcgatccc cggcgacccg cgcgatacca 480
ccacgccgtt agcgatggcg caggctctgc gcaatctgac gttgggcaat gccctgggtg 540
acactcagcg tgcgcagctg gtgatgtggc tgaaaggcaa caccaccggc gctgccagca 600
ttcaggcagg gctacccaca tcgtgggttg tcggggataa aaccggcagc ggcgattatg 660
gtacgacgaa tgatatcgcg gttatttggc cggaaggtcg cgcgccgctc gttctggtga 720
cttacttcac ccagtcggag ccgaaggcag agagccgtcg tgacgtgctc gctgctgccg 780
ccagaattgt caccgacggt tattaa                                      806

<210> 51
<211> 806
<212> DNA
<213> Artificial Sequence

<220> 
<223> Consensus DNA sequence

<400> 51
cgccgcttta tgcgcagacg agtgcggtgc agcaaaagct ggcggcgctg gagaaaagca 60
gcggagggcg gctgggcgtc gcgctcatcg ataccgcaga taatacgcag gtgctttatc 120
gcggtgatga acgctttcca atgtgcagta ccagtaaagt tatggcggcc gcggcggtgc 180
ttaagcagag tgaaacgcaa aagcagctgc ttaatcagcc tgtcgagatc aagcctgccg 240
atctggttaa ctacaatccg attgccgaaa aacacgtcaa cggcacaatg acgctggcag 300
aactgagcgc ggccgcgttg cagtacagcg acaataccgc catgaacaaa ttgattgccc 360
agctcggtgg cccgggaggc gtgacggctt ttgcccgcgc gatcggcgat gagacgtttc 420
gtctggatcg cactgaacct acgctgaata ccgccattcc cggcgacccg agagacacca 480
ccacgccgcg ggcgatggcg cagacgttgc gtcagcttac gctgggtcat gcgctgggcg 540
aaacccagcg ggcgcagttg gtgacgtggc tcaaaggcaa tacgaccggc gcagccagca 600
ttcgggccgg cttaccgacg tcgtggactg tgggtgataa gaccggcagc ggcgactacg 660
gcaccaccaa tgatattgcg gtgatctggc cgcagggtcg tgcgccgctg gttctggtga 720
cctattttac ccagccgcaa cagaacgcag agagccgccg cgatgtgctg gcttcagcgg 780
cgagaatcat cgccgaaggg ctgtaa                                      806
