
                                SEQUENCE LISTING

<110> PARDINAS, JOSE
      ZHAO, SHANRONG

<120> METHODS AND ALGORITHMS FOR SELECTING
  POLYNUCLEOTIDES FOR SYNTHETIC ASSEMBLY
  

<130> CEN5286PCT

<140> TO BE ASSIGNED      
<141> 2011-03-09  

<150> 12/720060
<151> 2010-03-09

<160> 13

<170> FastSEQ for Windows Version 4.0

<210> 1
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant L

<400> 1
gaactcacgt acggtattaa agacgtcccg ggcgatttaa ccaccataga tctgaccgaa 60
ttagaaaacc agtattcaat tggtttactt aagccggata ccgaatattt agtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 2
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant M

<400> 2
gaactcacgt acggtattaa agacgtcccg ggcgatatga ccaccataga tctgaccgaa 60
atggaaaacc agtattcaat tggtatgctt aagccggata ccgaatatat ggtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 3
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant N

<400> 3
gaactcacgt acggtattaa agacgtcccg ggcgataaca ccaccataga tctgaccgaa 60
aacgaaaacc agtattcaat tggtaacctt aagccggata ccgaatataa cgtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 4
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant P

<400> 4
gaactcacgt acggtattaa agacgtcccg ggcgatccga ccaccataga tctgaccgaa 60
ccggaaaacc agtattcaat tggtccgctt aagccggata ccgaatatcc ggtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 5
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant R

<400> 5
gaactcacgt acggtattaa agacgtcccg ggcgatcgaa ccaccataga tctgaccgaa 60
cgagaaaacc agtattcaat tggtcgactt aagccggata ccgaatatcg agtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 6
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant S

<400> 6
gaactcacgt acggtattaa agacgtcccg ggcgatagta ccaccataga tctgaccgaa 60
agtgaaaacc agtattcaat tggtagtctt aagccggata ccgaatatag tgtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 7
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant T

<400> 7
gaactcacgt acggtattaa agacgtcccg ggcgatacaa ccaccataga tctgaccgaa 60
acagaaaacc agtattcaat tggtacactt aagccggata ccgaatatac agtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 8
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant V

<400> 8
gaactcacgt acggtattaa agacgtcccg ggcgatgtta ccaccataga tctgaccgaa 60
gttgaaaacc agtattcaat tggtgttctt aagccggata ccgaatatgt tgtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 9
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant W

<400> 9
gaactcacgt acggtattaa agacgtcccg ggcgattgga ccaccataga tctgaccgaa 60
tgggaaaacc agtattcaat tggttggctt aagccggata ccgaatattg ggtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 10
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant Y

<400> 10
gaactcacgt acggtattaa agacgtcccg ggcgattata ccaccataga tctgaccgaa 60
tatgaaaacc agtattcaat tggttatctt aagccggata ccgaatatta tgtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 11
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant A

<400> 11
gaactcacgt acggtattaa agacgtcccg ggcgatgcca ccaccataga tctgaccgaa 60
gccgaaaacc agtattcaat tggtgccctt aagccggata ccgaatatgc cgtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 12
<211> 144
<212> DNA
<213> Artificial Sequence

<220> 
<223> Tenascin Fn domain variant E

<400> 12
gaactcacgt acggtattaa agacgtcccg ggcgatgaga ccaccataga tctgaccgaa 60
gaggaaaacc agtattcaat tggtgagctt aagccggata ccgaatatga ggtaagcttg 120
atctcgcgcc gcggcgatat gggc                                        144

<210> 13
<211> 7616
<212> DNA
<213> Homo sapiens

<400> 13
attacagagg aaggagctcg ctatataagc cagccaaagt tggctgcacc ggccacagcc 60
tgcctactgt cacccgcctc tcccgcgcgc agatacacgc ccccgcctcc gtgggcacaa 120
aggcagcgct gctggggaac tcgggggaac gcgcacgtgg gaaccgccgc agctccacac 180
tccaggtact tcttccaagg acctaggtct ctcgcccatc ggaaagaaaa taattctttc 240
aagaagatca gggacaactg atttgaagtc tactctgtgc ttctaaatcc ccaattctgc 300
tgaaagtgag ataccctaga gccctagagc cccagcagca cccagccaaa cccacctcca 360
ccatgggggc catgactcag ctgttggcag gtgtctttct tgctttcctt gccctcgcta 420
ccgaaggtgg ggtcctcaag aaagtcatcc ggcacaagcg acagagtggg gtgaacgcca 480
ccctgccaga agagaaccag ccagtggtgt ttaaccacgt ttacaacatc aagctgccag 540
tgggatccca gtgttcggtg gatctggagt cagccagtgg ggagaaagac ctggcaccgc 600
cttcagagcc cagcgaaagc tttcaggagc acacagtgga tggggaaaac cagattgtct 660
tcacacatcg catcaacatc ccccgccggg cctgtggctg tgccgcagcc cctgatgtta 720
aggagctgct gagcagactg gaggagctgg agaacctggt gtcttccctg agggagcaat 780
gtactgcagg agcaggctgc tgtctccagc ctgccacagg ccgcttggac accaggccct 840
tctgtagcgg tcggggcaac ttcagcactg aaggatgtgg ctgtgtctgc gaacctggct 900
ggaaaggccc caactgctct gagcccgaat gtccaggcaa ctgtcacctt cgaggccggt 960
gcattgatgg gcagtgcatc tgtgacgacg gcttcacggg cgaggactgc agccagctgg 1020
cttgccccag cgactgcaat gaccagggca agtgcgtaaa tggagtctgc atctgtttcg 1080
aaggctacgc cggggctgac tgcagccgtg aaatctgccc agtgccctgc agtgaggagc 1140
acggcacatg tgtagatggc ttgtgtgtgt gccacgatgg ctttgcaggc gatgactgca 1200
acaagcctct gtgtctcaac aattgctaca accgtggacg atgcgtggag aatgagtgcg 1260
tgtgtgatga gggtttcacg ggcgaagact gcagtgagct catctgcccc aatgactgct 1320
tcgaccgggg ccgctgcatc aatggcacct gctactgcga agaaggcttc acaggtgaag 1380
actgcgggaa acccacctgc ccacatgcct gccacaccca gggccggtgt gaggaggggc 1440
agtgtgtatg tgatgagggc tttgccggtg tggactgcag cgagaagagg tgtcctgctg 1500
actgtcacaa tcgtggccgc tgtgtagacg ggcggtgtga gtgtgatgat ggtttcactg 1560
gagctgactg tggggagctc aagtgtccca atggctgcag tggccatggc cgctgtgtca 1620
atgggcagtg tgtgtgtgat gagggctata ctggggagga ctgcagccag ctacggtgcc 1680
ccaatgactg tcacagtcgg ggccgctgtg tcgagggcaa atgtgtatgt gagcaaggct 1740
tcaagggcta tgactgcagt gacatgagct gccctaatga ctgtcaccag cacggccgct 1800
gtgtgaatgg catgtgtgtt tgtgatgacg gctacacagg ggaagactgc cgggatcgcc 1860
aatgccccag ggactgcagc aacaggggcc tctgtgtgga cggacagtgc gtctgtgagg 1920
acggcttcac cggccctgac tgtgcagaac tctcctgtcc aaatgactgc catggccagg 1980
gtcgctgtgt gaatgggcag tgcgtgtgcc atgaaggatt tatgggcaaa gactgcaagg 2040
agcaaagatg tcccagtgac tgtcatggcc agggccgctg cgtggacggc cagtgcatct 2100
gccacgaggg cttcacaggc ctggactgtg gccagcactc ctgccccagt gactgcaaca 2160
acttaggaca atgcgtctcg ggccgctgca tctgcaacga gggctacagc ggagaagact 2220
gctcagaggt gtctcctccc aaagacctcg ttgtgacaga agtgacggaa gagacggtca 2280
acctggcctg ggacaatgag atgcgggtca cagagtacct tgtcgtgtac acgcccaccc 2340
acgagggtgg tctggaaatg cagttccgtg tgcctgggga ccagacgtcc accatcatcc 2400
aggagctgga gcctggtgtg gagtacttta tccgtgtatt tgccatcctg gagaacaaga 2460
agagcattcc tgtcagcgcc agggtggcca cgtacttacc tgcacctgaa ggcctgaaat 2520
tcaagtccat caaggagaca tctgtggaag tggagtggga tcctctagac attgcttttg 2580
aaacctggga gatcatcttc cggaatatga ataaagaaga tgagggagag atcaccaaaa 2640
gcctgaggag gccagagacc tcttaccggc aaactggtct agctcctggg caagagtatg 2700
agatatctct gcacatagtg aaaaacaata cccggggccc tggcctgaag agggtgacca 2760
ccacacgctt ggatgccccc agccagatcg aggtgaaaga tgtcacagac accactgcct 2820
tgatcacctg gttcaagccc ctggctgaga tcgatggcat tgagctgacc tacggcatca 2880
aagacgtgcc aggagaccgt accaccatcg atctcacaga ggacgagaac cagtactcca 2940
tcgggaacct gaagcctgac actgagtacg aggtgtccct catctcccgc agaggtgaca 3000
tgtcaagcaa cccagccaaa gagaccttca caacaggcct cgatgctccc aggaatcttc 3060
gacgtgtttc ccagacagat aacagcatca ccctggaatg gaggaatggc aaggcagcta 3120
ttgacagtta cagaattaag tatgccccca tctctggagg ggaccacgct gaggttgatg 3180
ttccaaagag ccaacaagcc acaaccaaaa ccacactcac aggtctgagg ccgggaactg 3240
aatatgggat tggagtttct gctgtgaagg aagacaagga gagcaatcca gcgaccatca 3300
acgcagccac agagttggac acgcccaagg accttcaggt ttctgaaact gcagagacca 3360
gcctgaccct gctctggaag acaccgttgg ccaaatttga ccgctaccgc ctcaattaca 3420
gtctccccac aggccagtgg gtgggagtgc agcttccaag aaacaccact tcctatgtcc 3480
tgagaggcct ggaaccagga caggagtaca atgtcctcct gacagccgag aaaggcagac 3540
acaagagcaa gcccgcacgt gtgaaggcat ccactgaaca agcccctgag ctggaaaacc 3600
tcaccgtgac tgaggttggc tgggatggcc tcagactcaa ctggaccgca gctgaccagg 3660
cctatgagca ctttatcatt caggtgcagg aggccaacaa ggtggaggca gctcggaacc 3720
tcaccgtgcc tggcagcctt cgggctgtgg acataccggg cctcaaggct gctacgcctt 3780
atacagtctc catctatggg gtgatccagg gctatagaac accagtgctc tctgctgagg 3840
cctccacagg ggaaactccc aatttgggag aggtcgtggt ggccgaggtg ggctgggatg 3900
ccctcaaact caactggact gctccagaag gggcctatga gtactttttc attcaggtgc 3960
aggaggctga cacagtagag gcagcccaga acctcaccgt cccaggagga ctgaggtcca 4020
cagacctgcc tgggctcaaa gcagccactc attataccat caccatccgc ggggtcactc 4080
aggacttcag cacaacccct ctctctgttg aagtcttgac agaggaggtt ccagatatgg 4140
gaaacctcac agtgaccgag gttagctggg atgctctcag actgaactgg accacgccag 4200
atggaaccta tgaccagttt actattcagg tccaggaggc tgaccaggtg gaagaggctc 4260
acaatctcac ggttcctggc agcctgcgtt ccatggaaat cccaggcctc agggctggca 4320
ctccttacac agtcaccctg cacggcgagg tcaggggcca cagcactcga ccccttgctg 4380
tagaggtcgt cacagaggat ctcccacagc tgggagattt agccgtgtct gaggttggct 4440
gggatggcct cagactcaac tggaccgcag ctgacaatgc ctatgagcac tttgtcattc 4500
aggtgcagga ggtcaacaaa gtggaggcag cccagaacct cacgttgcct ggcagcctca 4560
gggctgtgga catcccgggc ctcgaggctg ccacgcctta tagagtctcc atctatgggg 4620
tgatccgggg ctatagaaca ccagtactct ctgctgaggc ctccacagcc aaagaacctg 4680
aaattggaaa cttaaatgtt tctgacataa ctcccgagag cttcaatctc tcctggatgg 4740
ctaccgatgg gatcttcgag acctttacca ttgaaattat tgattccaat aggttgctgg 4800
agactgtgga atataatatc tctggtgctg aacgaactgc ccatatctca gggctacccc 4860
ctagtactga ttttattgtc tacctctctg gacttgctcc cagcatccgg accaaaacca 4920
tcagtgccac agccacgaca gaggccctgc cccttctgga aaacctaacc atttccgaca 4980
ttaatcccta cgggttcaca gtttcctgga tggcatcgga gaatgccttt gacagctttc 5040
tagtaacggt ggtggattct gggaagctgc tggaccccca ggaattcaca ctttcaggaa 5100
cccagaggaa gctggagctt agaggcctca taactggcat tggctatgag gttatggtct 5160
ctggcttcac ccaagggcat caaaccaagc ccttgagggc tgagattgtt acagaagccg 5220
aaccggaagt tgacaacctt ctggtttcag atgccacccc agacggtttc cgtctgtcct 5280
ggacagctga tgaaggggtc ttcgacaatt ttgttctcaa aatcagagat accaaaaagc 5340
agtctgagcc actggaaata accctacttg cccccgaacg taccagggac ataacaggtc 5400
tcagagaggc tactgaatac gaaattgaac tctatggaat aagcaaagga aggcgatccc 5460
agacagtcag tgctatagca acaacagcca tgggctcccc aaaggaagtc attttctcag 5520
acatcactga aaattcggct actgtcagct ggagggcacc cacagcccaa gtggagagct 5580
tccggattac ctatgtgccc attacaggag gtacaccctc catggtaact gtggacggaa 5640
ccaagactca gaccaggctg gtgaaactca tacctggcgt ggagtacctt gtcagcatca 5700
tcgccatgaa gggctttgag gaaagtgaac ctgtctcagg gtcattcacc acagctctgg 5760
atggcccatc tggcctggtg acagccaaca tcactgactc agaagccttg gccaggtggc 5820
agccagccat tgccactgtg gacagttatg tcatctccta cacaggcgag aaagtgccag 5880
aaattacacg cacggtgtcc gggaacacag tggagtatgc tctgaccgac ctcgagcctg 5940
ccacggaata cacactgaga atctttgcag agaaagggcc ccagaagagc tcaaccatca 6000
ctgccaagtt cacaacagac ctcgattctc caagagactt gactgctact gaggttcagt 6060
cggaaactgc cctccttacc tggcgacccc cccgggcatc agtcaccggt tacctgctgg 6120
tctatgaatc agtggatggc acagtcaagg aagtcattgt gggtccagat accacctcct 6180
acagcctggc agacctgagc ccatccaccc actacacagc caagatccag gcactcaatg 6240
ggcccctgag gagcaatatg atccagacca tcttcaccac aattggactc ctgtacccct 6300
tccccaagga ctgctcccaa gcaatgctga atggagacac gacctctggc ctctacacca 6360
tttatctgaa tggtgataag gctgaggcgc tggaagtctt ctgtgacatg acctctgatg 6420
ggggtggatg gattgtgttc ctgagacgca aaaacggacg cgagaacttc taccaaaact 6480
ggaaggcata tgctgctgga tttggggacc gcagagaaga attctggctt gggctggaca 6540
acctgaacaa aatcacagcc caggggcagt acgagctccg ggtggacctg cgggaccatg 6600
gggagacagc ctttgctgtc tatgacaagt tcagcgtggg agatgccaag actcgctaca 6660
agctgaaggt ggaggggtac agtgggacag caggtgactc catggcctac cacaatggca 6720
gatccttctc cacctttgac aaggacacag attcagccat caccaactgt gctctgtcct 6780
acaaaggggc tttctggtac aggaactgtc accgtgtcaa cctgatgggg agatatgggg 6840
acaataacca cagtcagggc gttaactggt tccactggaa gggccacgaa cactcaatcc 6900
agtttgctga gatgaagctg agaccaagca acttcagaaa tcttgaaggc aggcgcaaac 6960
gggcataaat tccagggacc actgggtgag agaggaataa ggcccagagc gaggaaagga 7020
ttttaccaaa gcatcaatac aaccagccca accatcggtc cacacctggg catttggtga 7080
gagtcaaagc tgaccatgga tccctggggc caacggcaac agcatgggcc tcacctcctc 7140
tgtgatttct ttctttgcac caaagacatc agtctccaac atgtttctgt tttgttgttt 7200
gattcagcaa aaatctccca gtgacaacat cgcaatagtt ttttacttct cttaggtggc 7260
tctgggaatg ggagaggggt aggatgtaca ggggtagttt gttttagaac cagccgtatt 7320
ttacatgaag ctgtataatt aattgtcatt atttttgtta gcaaagatta aatgtgtcat 7380
tggaagccat cccttttttt acatttcata caacagaaac cagaaaagca atactgtttc 7440
cattttaagg atatgattaa tattattaat ataataatga tgatgatgat gatgaaaact 7500
aaggattttt caagagatct ttctttccaa aacatttctg gacagtacct gattgtattt 7560
tttttttaaa taaaagcaca agtacttttg agtttgttaa aaaaaaaaaa aaaaaa     7616


