                         SEQUENCE LISTING

<110>  Labor Diagnostik GmbH Leipzig
 
<120>  Method for specific detection of classical swine fever virus

<130>  S1013 PCT BLN

<150>  EP10164943.2
<151>  2010-06-04

<160>  43    

<170>  PatentIn version 3.5

<210>  1
<211>  12301
<212>  DNA
<213>  pestivirus type 2


<220>
<221>  gene
<222>  (8423)..(9913)
<223>  NS5A

<300>
<308>  AF326963
<309>  2008-12-08
<313>  (1)..(12301)

<400>  1
gtatacgagg ttagttcatt ctcgtatgca tgattggaca aatcaaaatt tcaatttggt       60

tcagggcctc cctccagcga cggccgaact gggctagcca tgcccacagt aggactagca      120

aacggaggga ctagccgtag tggcgagctc cctgggtggt ctaagtcctg agtacaggac      180

agtcgtcagt agttcgacgt gagcagaagc ccacctcgag atgctatgtg gacgagggca      240

tgcccaagac acaccttaac cctagcgggg gtcgctaggg tgaaatcaca ccacgtgatg      300

ggagtacgac ctgatagggc gctgcagagg cccactatta ggctagtata aaaatctctg      360

ctgtacatgg cacatggagt tgaatcattt tgaactttta tacaaaacaa acaaacaaaa      420

accaatggga gtggaggaac cggtatacga tgccacgggg aggccattgt ttggagaccc      480

gagtgaggta cacccacaat caacactgaa gctaccacat gataggggga gaggtaacat      540

caaaacaaca ctgaagaacc tacctaggaa aggcgactgc aggagtggca accatctagg      600

cccggttagt gggatatatg taaagcccgg ccctgtcttt tatcaggact acatgggccc      660

ggtctaccat agagcccctc tagagttttt taacgaagcg cagttttgcg aggtgaccaa      720

aaggataggt agggtgacag gtagtgacgg aaagctttac catatatatg tgtgcatcga      780

tggttgcata ctgctgaagc tagccaagag ggacgagcca agaaccctga agtggattag      840

aaatttcacc gactgtccat tgtgggttac cagttgctct gatgatggcg caagtggaag      900

taaagagaag aagccagata ggatcaacaa aggcaaatta aaaatagccc caaaagagca      960

tgagaaggac agcagaacta agccacctga cgctacgatt gtagtggaag gagtaaaata     1020

ccaggttaaa aagaagggta aagttaaagg aaagagtacc caagacggcc tgtaccacaa     1080

caagaataaa ccaccagaat ctaggaagaa attagaaaaa gccctattgg catgggcggt     1140

aatagcaatt atgttgtacc aaccagttga agccgaaaat ataactcaat ggaacctgag     1200

tgacaacggc actaatggta tccagcatgc tatgtacctt agaggggtta gcaggagctt     1260

gcatgggatc tggccggaaa aaatatgcaa aggagtcccc acctacctgg ccacagacac     1320

ggaactgaaa gaaatacagg gaatgatgga tgccagcgag gggacaaact atacgtgctg     1380

taagttacag agacatgaat ggaacaaaca tggatggtgt aactggtaca atatagaccc     1440

ctggatacag ttgatgaata gaacccaagc aaacttggca gaaggccctc cggccaagga     1500

gtgcgctgtg acttgcaggt acgataaaga tgctgacatc aacgtggtca cccaggccag     1560

aaacaggcca acaaccctga ccggttgcaa gaaaggaaaa aatttttctt ttgcgggtac     1620

agttatagag ggcccatgta atttcaatgt ttccgtggag gatatcttgt atggggatca     1680

tgagtgcggc agtttgcttc aggacacggc tctgtaccta gtggatggaa tgaccaacac     1740

tatagagaat gccagacagg gagcagcgag ggtaacatct tggctcggga ggcaactcag     1800

cactgccggg aagaggttgg agggtagaag caaaacctgg tttggtgcct atgccctatc     1860

gccttactgt aatgtaacaa gcaaaatagg gtacatatgg tacactaaca actgcacccc     1920

ggcttgcctc cccaaaaata caaagataat aggccccgga aaatttgaca ctaacgcgga     1980

agacggaaag attctccatg agatgggggg tcacctatca gaatttctgc tgctctctct     2040

ggttgttctg tctgacttcg cccctgaaac agccagcgcg ttatacctca ttttgcacta     2100

catgattcct caatcccatg aagaacctga aggctgcgac acaaaccagc tgaatctaac     2160

agtggaactc aggactgaag acgtaatacc gtcatcagtc tggaatgttg gcaaatatgt     2220

gtgtgttaga ccagactggt ggccatatga aaccaaggtg gctttgttat ttgaagaggc     2280

aggacaggtc gtaaaattag ccttacgagc gctgagggat ttaaccaggg tctggaatag     2340

cgcatcaacc acggcattcc tcatctgctt gataaaagta ttaagaggac agatcgtgca     2400

aggtgtgata tggctgctac tagtaactgg ggcacaaggc cggctagcct gcaaggaaga     2460

ttacaggtac gcaatatcat cgaccaatga gatagggcta ctcggggccg aaggtctcac     2520

caccacctgg aaagaataca accacgattt gcaactgaat gacgggaccg ttaaggccat     2580

ttgcgtggca ggttccttta aagtcatagc acttaatgtg gtcagtagga ggtatttggc     2640

atcattgcat aaggaggctt cactcacttc cgtgacattt gagctcctgt tcgacgggac     2700

caacccatca actgaggaaa tgggagatga cttcgggttc gggctgtgcc cgttcgatac     2760

gagtcctgtt gtcaagggaa agtacaatac aaccttgttg aacggtagtg ctttctatct     2820

tgtctgccca atagggtgga cgggtgtcat agagtgcaca gcagtgagcc caacaactct     2880

gagaacagaa gtggtaaaga ccttcaggag agacaagccc tttccgcaca gaatggattg     2940

tgcgaccacc acagtggaaa atggagattt attctactgt aagttggggg gcaactggac     3000

atgtgtgaaa ggtgaaccag tggtctacac gggggggcta gtaaaacaat gcagatggtg     3060

tggcttcgac ttcaatgagc ccgacggact cccgcactac cccataggta agtgcatctt     3120

ggtaaatgag acaggttaca gaatagtaga ttcaacggac tgtaacagag atggcgttgt     3180

aatcagcaca gatgggagtc atgagtgctt gatcggtaac acaactgtca aggtgcatgc     3240

atcagatgaa agactgggcc ctatgccatg cagacccaaa gagattgtct ctagtgcagg     3300

acctgtaagg aaaacttcct gtacattcaa ctacgcaaaa actttgaaga acaagtacta     3360

tgagcccagg gacagctact tccagcaata tatgcttaag ggcgagtatc agtactggtt     3420

tgacctggac gtgactgacc gccactcaga ttacttcgca gaatttgtcg tcttggtagt     3480

ggtagcactg ttaggaggaa gatatgtcct gtggctaata gtgacctaca tagttctaac     3540

agaacaactc gccgctggtt taccattggg ccagggtgag gtagtgttga tagggaactt     3600

aattacccac acagacattg aggtcgtagt atatttctta ctactctatt tggtcatgag     3660

ggatgagcct ataaagaaat ggatactgct gctgttccat gctatgacta acaatccagt     3720

caagaccata acagtggcat tgcttatggt tagtggggtt gccaagggtg gaaagataga     3780

cggcggttgg cagcggctgc cagagaccag ctttgacatc caactcgcgc tgacagttat     3840

agtagtcgct gtgatgttac tggcaaagag agatccaact actgtcccct tggttataac     3900

agtggcaacc ctgagaacgg ctaagatgac taatggactt agcacggata tagccatagc     3960

tacagtgtca acagcgttgc taacctggac ctacattagt gactattata gatacaagac     4020

ttggctacag taccttatta gcacagtgac aggtatcttc ttaataaggg tactgaaggg     4080

aataggtgag ttggatttac acactccaac cttgccatct tacagacccc tcttcttcat     4140

tctcgtgtac ctcatttcca ctgcagtggt aacaagatgg aatctggaca tagccggatt     4200

gctgttgcag tgtgtcccaa cccttttgat ggtttttacg atgtgggcag acattctcac     4260

cctgatcctc atactgccca cttacgagct aacaaaacta tattacctca aggaagtgaa     4320

gactggggca gaaaagggct ggttatggaa gaccaacttc aagagggtaa acgacatata     4380

cgaagttgac caatctggtg aaggggttta ccttttcccg tcaaaacaaa agacaagttc     4440

aataacaggt accatgttgc cattgatcaa agccatactc atcagctgca tcagtaataa     4500

gtggcagttc atatatctat tgtacttgat atttgaagtg tcttactacc tccacaagaa     4560

gatcatagat gaaatagcag gagggaccaa cttcatctca agacttgtag ccgctttgat     4620

cgaagccaat tgggcctttg acaacgaaga agttaggggt ttaaagaagt tcttcctgtt     4680

gtctagtagg gttaaagaac tgatcatcaa acacaaagtg aggaatgaag taatggtcca     4740

ctggtttggt gacgaagagg tttatgggat gccaaagttg gttggcttag tcaaggcagc     4800

aacattgagt aaaaataaac attgtatttt gtgcaccgtc tgtgaagaca gagagtggag     4860

aggagaaacc tgcccaaaat gcgggcgttt tgggccacca atgacctgtg gtatgaccct     4920

agccgacttt gaagaaaaac attataagag gatctttttt agagaggatc aatcagaagg     4980

gccggttaga gaggagtacg cagggtatct gcaatataga gccagagggc aattattcct     5040

gaggaatctc ccggtgctag caacaaaagt caagatgctc ctggtcggaa atcttgggac     5100

ggaggtggga gacttggaac accttggctg ggtccttagg gggcctgccg tttgcaagaa     5160

ggttaccgaa catgagaaat gcaccacatc cataatggac aaattgactg cttttttcgg     5220

tgttatgcca aggggcacca cacctagagc ccctgtgaga ttccccacct ctctcttaaa     5280

gataagaagg gggttggaaa ctggctgggc gtacacacac caaggtggca ttagttcagt     5340

ggaccatgtc acttgtggga aagacttgct ggtatgtgac actatgggcc ggacaagggt     5400

cgtttgccaa tcaaataata agatgacaga tgagtctgag tatggagtta aaactgactc     5460

cggatgcccg gaaggagcta ggtgttatgt gttcaaccca gaggcagtta acatatcagg     5520

gactaaagga gccatggtcc acttacaaaa aactggagga gaattcacct gtgtgacagc     5580

atcaggaact ccggccttct ttgatctcaa gaacctcaaa ggctggtcag ggctaccgat     5640

atttgaggca tcaagtggaa gggtagtcgg cagggtcaag gtcgggaaga atgaggactc     5700

taaaccaacc aagcttatga gtggaataca aacagtctcc aaaagtacca cagacttgac     5760

agaaatggta aagaaaataa cgaccatgaa caggggagaa ttcagacaaa taacccttgc     5820

tacaggtgcc ggaaaaacca cggaactccc taggtcagtc atagaagaga tagggaggca     5880

taagagagtc ttggtcttga tccctctgag ggcggcagca gagtcagtat accaatatat     5940

gagacaaaaa catccaagca tcgcatttaa cctgaggata ggggagatga aggaagggga     6000

catggccaca gggataacct atgcttcata cggttacttc tgtcagatgc cacaacctaa     6060

gttgcgagcc gcgatggttg agtactcctt catatttctt gacgagtacc actgtgccac     6120

cccagaacaa ttggccatca tgggaaagat ccacagattt tcagagaacc tgcgggtagt     6180

agccatgacc gcaacaccag caggcacagt aacaaccaca gggcagaaac accctataga     6240

agaattcata gccccagaag tgatgaaagg ggaagactta ggctcagagt acttggacat     6300

tgctggacta aagataccag tagaggagat gaagagcaac atgctggttt ttgtgcccac     6360

taggaacatg gcggtggaga cagcaaagaa attgaaagct aagggttaca actcaggcta     6420

ctattatagt ggagaggatc catctaacct gagggtggta acgtcgcagt ccccgtacgt     6480

ggtggtggca accaacgcga tagaatcagg tgttactctc ccggacttgg atgtggttgt     6540

cgatacaggg cttaagtgtg aaaagagaat acggctgtca cctaagatgc ccttcatagt     6600

gacgggcctg aagagaatgg ctgtcacgat tggggaacaa gcccagagaa gggggagagt     6660

tgggagagta aagcctggga gatactacag gagtcaagaa actcccgttg gttctaaaga     6720

ttaccattat gatctactgc aagcacagag gtacggtatt gaagatggga taaacatcac     6780

caaatccttt agagagatga actatgattg gagcctttat gaggaggaca gtctgatgat     6840

tacacaattg gaaatcctca ataatttgtt gatatcagaa gaactaccga tggcagtaaa     6900

aaatataatg gccaggactg accacccaga accaattcag ctggcgtaca acagctacga     6960

aacacaagtg ccagtgctat tcccaaaaat aaagaatgga gaggtgactg atagttacga     7020

taactatacc ttcctcaacg caagaaaatt gggggatgat gtaccccctt acgtgtatgc     7080

cacagaggat gaggacttag cggtagagct actgggctta gactggccag accctggaaa     7140

ccaaggaacc gtagaggctg gcagagcact aaaacaagta gttggtctat caacagctga     7200

gaatgccctg ttagtagcct tattcggcta tgtaggatat caggcacttt caaagaggca     7260

tataccagta gtcacagata tatattcaat tgaagatcac aggttggaag acaccacaca     7320

cctacagtac gccccaaatg ctatcaagac ggaggggaag gagacagaat tgaaggagct     7380

agcccagggg gatgtgcaga gatgtgtgga agctatgacc aattatgcaa gagagggtat     7440

ccaattcatg aagtctcagg cactgaaggt gaaagaaacc cccacttaca aagagacaat     7500

gaacactgtg actgactatg taaagaaatt catggaggcg ctggcagaca gtaaagaaga     7560

catcttaaga tatgggttgt gggggacgca cacagcctta tataagagca tcagtgccag     7620

gcttgggagt gagactgcgt tcgctaccct ggtcgtgaag tggctggcat ttggggggga     7680

atcaatagca gaccatgtca aacaagcggc cacagacttg gtcgtctact atatcatcaa     7740

cagacctcag ttcccaggag acacagagac acaacaggaa ggaaggaaat ttgtggccag     7800

cctactggtc tcagctctag ctacttacac atacaaaagc tggaattaca ataatctgtc     7860

caagatagtt gaaccggctt tggccactct gccctatgcc gccacagctc tcaaactatt     7920

cgcccccact cgattggaga gcgttgtcat attgagtacc gcaatctaca agacctacct     7980

atcaatcagg cgcggaaaaa gcgatggttt gctaggcaca ggggttagtg cggctatgga     8040

gatcatgtca caaaatccag tatccgtggg catagcagtc atgctagggg taggggccgt     8100

ggcagcccac aatgcaatcg aggccagtga gcagaagaga acactactca tgaaagtttt     8160

tgtaaagaac ttcttggacc aagcagccac tgatgaatta gtcaaggaga gtcctgagaa     8220

aataataatg gctttgtttg aagcagtgca gacagtcggt aaccctctta gactagtata     8280

ccacctttat ggagttttct ataaggggtg ggaggcaaaa gagttggccc aaaggacagc     8340

cggtaggaac cttttcactt tgataatgtt cgaggctgtg gaactactgg gagtagatag     8400

tgaaggaaag atccgccagc tatcaagtaa ttacatacta gagctcctgt ataagttccg     8460

tgacagtatc aagtctagcg tgagggagat ggcaatcagc tgggcccctg cccctttcag     8520

ctgtgattgg acaccgacgg atgacagaat agggctcccc caagacaatt tcctccaagt     8580

ggagacgaaa tgcccctgtg gttacaagat gaaggcagtt aagaattgtg ctggagagct     8640

gagactcttg gaggaggaag gctcatttct ctgcagaaat aaattcggga gaggttcacg     8700

gaactacagg gtgacaaaat actatgatga caatctatca gaaataaagc cagtgataag     8760

aatggaaggg catgtggaac tctactacaa gggagccacc atcaaactgg acttcaacaa     8820

cagtaaaaca atactggcaa ccgataaatg ggagattgat cactccactc tggtcagggt     8880

gctcaagagg cacacagggg ctggatatca tggggcatac ctgggcgaga aaccgaacta     8940

caaacatctg atagagaggg actgtgcaac catcaccaaa gataaggttt gttttctcaa     9000

aatgaagaga gggtgtgcat ttacttatga cttatccctt cacaacctta cccgactgat     9060

tgaattggta cacaagaata acttggaaga caaagagatt cctgctgtta cggttacaac     9120

ctggctggct tacacgtttg taaatgaaga tatagggacc ataaaaccag ccttcgggga     9180

gaaagtaaca ccggagatgc aggaggaaat aaccttgcag cctgctgtag tggtggatac     9240

aactgacgtg accgtgactg tggtagggga agcccctact atgactacag gggagactcc     9300

gacagcgttc accagctcag gttcagaccc gaaaggccaa caagttttaa aactgggggt     9360

aggtgaaggc caataccccg ggactaatcc acagagggca agcctgcacg aagccataca     9420

aggtgcagat gagagaccct cggtgctgat attagggtct gataaagcca cctctaatag     9480

agtgaaaact gcaaagaatg taaaggtata cagaggcagg gacccactag aagtgagaga     9540

tatgatgagg aggggaaaga tcctggtcat agccctgtct agggttgata atgctctatt     9600

gaaatttgtt gactacaaag gcacctttct aactagagag accctagagg cattaagttt     9660

gggtaggcct aaaaagaaaa acataaccaa ggcagaagcg cagtggttgc tgtgcctcga     9720

agaccaaatg gaagagctac ccgattggtt cgcagccggg gaacccattt ttctagaggc     9780

taacattaaa catgacaggt accatctggt gggggatata gctaatatca aggaaaaagc     9840

caaacagttg ggagctacag actccacaaa gatatctaag gaggttggtg caaaagtgta     9900

ttctatgaaa ctgagtaatt gggtgatgca agaagaaaat aaacagggca acctgacccc     9960

cttgtttgaa gagctcctgc aacagtgtcc acccggaggc cagaacaaaa ctgcacatat    10020

ggtctctgct taccaactag ctcaagggaa ctggatgcca accagctgcc atgtttttat    10080

ggggaccata tctgccagga ggaccaagac ccatccatat gaagcatacg tcaagttaag    10140

ggagttggta gaggaacaca agatgaaaac attgtgtcct ggatcaagcc tgggtaagca    10200

caacgaatgg ataattggta aaatcaaata ccagggaaac ctgaggacca aacacatgtt    10260

gaaccccggc aaggtggcag agcaactgtg cagagaggga cacagacaca atgtgtataa    10320

caagacaata ggctcagtaa tgacagctac tggtatcagg ttggagaagt tgcccgtggt    10380

tagggcccag acagacacaa ccaacttcca ccaagcaata agggataaga tagacaagga    10440

agagaaccta caaaccccgg gtttacataa gaaactaatg gaagttttca atgcattgaa    10500

acgacccgag ttagagtcct cctacgatgc cgtggaatgg gaggaactgg agagaggaat    10560

aaacaggaag ggtgctgctg gtttctttga acgcaaaaat ataggggaaa tattggattc    10620

agagaaaaac aaagtcgaag agattattga caatctgaaa aaaggcagaa acatcaaata    10680

ctatgaaacc gcgatcccaa agaatgagaa gagggacgtc aatgatgact ggactgctgg    10740

tgacttcgtg gaagagaaga aacccagagt catacaatac cctgaagcaa aaacaaggct    10800

ggccatcacc aaggtgatgt ataagtgggt gaagcagaag ccagtagtta tacccgggta    10860

tgaagggaag acacctctat tccaaatttt tgacaaagta aagaaggaat gggatcaatt    10920

ccaaaatcca gtggcagtga gttttgacac taaggcgtgg gacacccagg taaccacaaa    10980

agatttggag ttgataaagg acatacaaaa gtactatttc aagaagaaat ggcataaatt    11040

tattgacacc ctgaccatgc acatgtcaga agtacccgta atcagtgctg atggggaagt    11100

atacataagg aaagggcaaa gaggcagtgg acaacctgac acaagcgcag gcaatagcat    11160

gctaaatgtg ttaacaatga tttacgcctt ctgcgaggcc acgggagtac cctacaagag    11220

cttcgacagg gtggcaaaaa ttcatgtgtg tggggatgat ggtttcctga tcacagaaag    11280

agctctcggt gagaaattcg cgagtaaggg agtccagatc ctatatgaag ctgggaagcc    11340

ccagaagatc actgaagggg acaagatgaa agtggcctac caatttgatg atattgagtt    11400

ttgctcccat acaccaatac aagtaaggtg gtcagataac acttctagtt acatgccggg    11460

gagaaataca accacaatcc tggctaaaat ggccacaagg ttagattcca gtggtgagag    11520

gggtaccata gcatatgaga aagcagtagc attcagcttc ctgctgatgt actcctggaa    11580

cccactaatc agaaggatct gcttactggt gctatcaact gaactgcaag tgaaaccagg    11640

gaagtcaacc acttactact atgaagggga cccgatatct gcctacaagg aagtcatcgg    11700

ccacaatctt tttgatctta agagaacaag cttcgagaag ctggccaagt taaatctcag    11760

catgtcagta ctcggagcct ggactagaca caccagtaaa agactactac aagactgtgt    11820

caatgtgggt gttaaagagg gcaactggct agttaatgca gatagactag taagtagcaa    11880

gactggaaat aggtacatac ccggagaggg ccacaccctg caagggagac attatgaaga    11940

actggtgttg gcaagaaaac agatcaacaa ctttcaaggg accgacaggt acaatctagg    12000

cccaatagtc aatatggtgt taaggaggct gagagtcatg atgatgaccc tgatagggag    12060

aggggtatga gcgcgggtaa cccgggatct ggacccgcca gtagaaccct gttgtagata    12120

acactaattt ttttttattt atttagatat tactatttat ttatttattt atttattgaa    12180

tgagtaagaa ctggtacaaa ctacctcaag ttaccacact acactcattt ttaacagcac    12240

tttagctgga aggaaaattc ctgacgtcca cagttggact aaggtaattt cctaacggcc    12300

c                                                                    12301


<210>  2
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  nucleic acid probe

<400>  2
tgataytrgg gtcyga                                                       16


<210>  3
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CSFV amplification primer (forward)

<400>  3
aataaatcat aagcctgcwy gaagcyatac aa                                     32


<210>  4
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  CSFV amplification primer (reverse)

<400>  4
cttyacattc tthrcrgtyt tyacyct                                           27


<210>  5
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  primer for amplification of beta-actin reference nucleic acid

<400>  5
btccttcctg ggcatgga                                                     18


<210>  6
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  reverse primer for amplification of beta-actin reference nucleic 
       acid

<400>  6
grggsgcgat gatcttgat                                                    19


<210>  7
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  nucleic acid probe for beta-actin reference nucleic acid

<400>  7
tccatcatga agtgygacgt sgacatccg                                         29


<210>  8
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  8
tcagcagagg gcaagcttgc ttgaagctat acaaggtgtg gatgaaaggc cctcggtact       60

gatattgggg tctgataagg ccacctccaa tagggtgaag accgcaaaga atgtgaagat      120


<210>  9
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  9
tccacagagg gcaagcctgc acgaagccat acaaggtgct gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtaaaa actgcaaaga atgtaaaggt      120


<210>  10
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  10
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctctgtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  11
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  11
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctctgtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  12
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  12
ccagcagagg gcaagtctgc acgaagccat acaaggggca gatgaaaggc cctcagtact       60

gatactgggg tctgataaag ccacctccaa tagagtaaaa acagcaaaaa atgtgaagat      120


<210>  13
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  13
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga atgtaaaggt      120


<210>  14
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  14
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cttcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgctaaga atgtaaaggt      120


<210>  15
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  15
tccacagagg gcaagcctgc acgaagccat acaaggtgct gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtaaaa actgcaaaga atgtaaaggt      120


<210>  16
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  16
tcagcagaga gcaagcctgc tcgaagctat acaaggtgtg gatgaaaggc cctcggtact       60

gatactgggg tctgataagg ccacctccaa tagggtcaag accgcaaaga atgtgaagat      120


<210>  17
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  17
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cttcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgctaaga atgtaaaggt      120


<210>  18
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  18
tccacagaga gcaagcctgc acgaagccat acaaaatgca gatgaaaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgtgaaga atgtgaaggt      120


<210>  19
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  19
tccacagaga gcaagcctgc acgaagccat acaaagcgca gatgaaaggc cctctgtgtt       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgtaaaga atgtgaaggt      120


<210>  20
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  20
tccacagaga gcaagcttgc tcgaagctat acaaggtggg gatgaaaggc cctcggtact       60

gatattgggg tctgataagg ccacctccaa tagggtgaag accgcaaaga atgtgaagat      120


<210>  21
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  21
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga atgtaaaggt      120


<210>  22
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  22
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga atgtaaaggt      120


<210>  23
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  23
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagagac cctcggtgct       60

gatattaggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  24
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  24
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga gtgtaaaggt      120


<210>  25
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  25
tcagcagaga gcaagcttgc tcgaagctat acaaggtgtg gatgaaaggc cctcggtact       60

gatattgggg tctgataaag ccacctccaa cagggtgagg accgcaaaga atgtcaagat      120


<210>  26
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  26
tcagcagaga gcaagcttgc tcgaagcaat acaaggtgtg gatgaaaggg cctcggtact       60

gatattgggg tctgataagg ccacctccaa cagggtgaag accgcaaaga atgtcaagat      120


<210>  27
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  27
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga atgtaaaggt      120


<210>  28
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  28
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctctgtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  29
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  29
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctctgtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  30
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  30
tccacagaga gcaagcctgc acgaagccat acaaaatgca gatgaaaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgtgaaga atgtgaaggt      120


<210>  31
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  31
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctctgtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  32
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  32
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga atgtaaaggt      120


<210>  33
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  33
tccacagagg gtaagtctgc acgaagccat acaaggtgcg gatgagaggc cctcagtact       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtgaaggt      120


<210>  34
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  34
tccacagagg gcaagcctgc acgaagccat acaaggtgct gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtaaaa actgcaaaga atgtaaaggt      120


<210>  35
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  35
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cttcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgctaaga atgtaaaggt      120


<210>  36
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  36
tccacagagg gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctcggtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaag actgcaaaga atgtaaaggt      120


<210>  37
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  37
tccacagaag gcaagcctgc acgaagccat acaaggtgca gatgagaggc cctctgtgct       60

gatattgggg tctgataaag ccacctctaa tagagtgaaa actgcaaaga atgtaaaggt      120


<210>  38
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  38
tcagcagaga gctagcctgc tcgaagctat acaaggtgtg gatgaaaggc cctcggtact       60

gatactgggg tctgataagg ccacctctaa tagggtgaag accgcaaaga atgtgaagat      120


<210>  39
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  39
tcagcagaga gctagcctgc tcgaagctat acaaggtgtg gatgaaaggc cctcggtact       60

gatactgggg tctgataagg ccacctccaa tagggtgaag accgcaaaga atgtgaagat      120


<210>  40
<211>  120
<212>  DNA
<213>  pestivirus type 2

<400>  40
tcagcagaga gctagcctgc tcgaagctat acaaggtgtg gatgaaaggc cctcggtact       60

gatactgggg tctgataagg ccacctctaa tagggtgaag accgcaaaga atgtgaagat      120


<210>  41
<211>  107
<212>  DNA
<213>  pestivirus type 2

<400>  41
aataaatcat aagcctgctc gaagcyatac aaagtgtgga tgaaaggccc tcggtactga       60

tattggggtc cgataaggcc acctccagta gggtgaagac cgcgaag                    107


<210>  42
<211>  206
<212>  DNA
<213>  Sus scrofa

<400>  42
ctccttcctg ggcatggaat cctgcggcat ccacgaaact accttcaact ccatcatgaa       60

gtgcgacgtc gacatccgca aggacctcta cgccaacacg gtgctgtcgg gtggcaccac      120

catgtaccca ggcatcgccg acaggatgca gaaggagatc acggccctgg cgcccagcac      180

gatgaagatc aagatcatcg cgcctc                                           206


<210>  43
<211>  140
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oLPC-CSF-NS5A [positive control nucleic acid for 
       CSF-9403.1-F-flap (forward primer), CSF 9501R (reverse primer) 
       and 9448-LNA-FAM (CSFV nucleic acid probe)]

<400>  43
agctgtaata cgactcacta tagggcgtga tgagcctgcw ygaagcyata caaacagccg       60

cacgagctct cgcagcatcc tgcctgatay trgggtcyga tatgcgcagr gtraaracyg      120

ydaagaatgt raagtgatgc                                                  140


