                         SEQUENCE LISTING

<110>  UNIVERSITE DE MONTREAL
       LEGAULT, Pascale
 
<120>  NOVEL REAGENTS AND METHODS FOR RNA APPLICATIONS

<130>  12810.415

<150>  US 61/365,005
<151>  2010-07-16

<160>  75    

<170>  PatentIn version 3.5

<210>  1
<211>  18
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Synthetic peptide


<220>
<221>  MISC_FEATURE
<222>  (1)..(1)
<223>  Xaa at position 1 is any amino acid or is absent

<220>
<221>  MISC_FEATURE
<222>  (2)..(2)
<223>  Xaa at position 2 is Ala, Asp, Thr or Asn

<220>
<221>  MISC_FEATURE
<222>  (3)..(3)
<223>  Xaa at position 3 is Ala or Ser

<220>
<221>  MISC_FEATURE
<222>  (4)..(4)
<223>  Xaa at position 4 is Gln, Arg or Lys

<220>
<221>  MISC_FEATURE
<222>  (5)..(5)
<223>  Xaa at position 5 is Ala, Thr or Ser

<220>
<221>  MISC_FEATURE
<222>  (6)..(6)
<223>  Xaa at position 6 is Arg or Lys

<220>
<221>  MISC_FEATURE
<222>  (7)..(7)
<223>  Xaa at position 7 is Tyr or Arg

<220>
<221>  MISC_FEATURE
<222>  (8)..(8)
<223>  Xaa at position 8 is Arg, Lys or His

<220>
<221>  MISC_FEATURE
<222>  (9)..(9)
<223>  Xaa at position 9 is Glu or Ala

<220>
<221>  MISC_FEATURE
<222>  (10)..(11)
<223>  Xaa at positions 10 and 11 is Arg or Lys

<220>
<221>  MISC_FEATURE
<222>  (12)..(18)
<223>  Xaa at positions 12 to 18 is any amino acid

<400>  1

Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 
1               5                   10                  15      


Xaa Xaa 
        


<210>  2
<211>  18
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Synthetic peptide

<400>  2

Met Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp 
        


<210>  3
<211>  18
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  artificial sequence

<400>  3

Gly Asn Ala Lys Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp 
        


<210>  4
<211>  18
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Synthetic peptide

<400>  4

Gly Asn Ala Lys Thr Arg Arg His Glu Arg Arg Arg Lys Leu Ala Ile 
1               5                   10                  15      


Glu Arg 
        


<210>  5
<211>  69
<212>  RNA
<213>  Bacillus subtilis

<400>  5
gcgaguauaa ccucaauaau augguuugag ggugucuacc aggaaccgua aaauccugac       60

uacucgcga                                                               69


<210>  6
<211>  22
<212>  PRT
<213>  Bacteriophage lambda

<400>  6

Met Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp Lys Ala Ala Asn 
            20          


<210>  7
<211>  22
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Bacteriophage alpha N peptide mutant

<400>  7

Gly Asn Ala Lys Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp Lys Ala Ala Asn 
            20          


<210>  8
<211>  252
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  cloning region within the RNA expression vector pRSAU65C-ARiBo1

<400>  8
cgccaagcct taatacgact cactatagcg agtataacct caataatatg gtttgagggt       60

gtctaccagg aaccgtaaaa tcctgactac tcgcgagcgc cgaactgggc cctgaagaag      120

ggctcagttg acgaggtggg gtttatcgag atttcggcgg atgactcccg gttgttcatc      180

acaaccgcaa acttttactt aaatcattaa ggtgacttag tggacaaagg tgaaagtgtg      240

atgaattcac tg                                                          252


<210>  9
<211>  46
<212>  RNA
<213>  Mus musculus

<400>  9
gcagauugag ggucuaugau accacccggu acaggagaua ucugca                      46


<210>  10
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  pARiBo1 plasmid used for cloning and transcription

<400>  10
gccaagcttt aatacgactc actataggcg aagcgccgaa ctgggccctg atgaattcac       60

t                                                                       61


<210>  11
<211>  15
<212>  RNA
<213>  Bacteriophage lambda

<400>  11
gcccugaaaa agggc                                                        15


<210>  12
<211>  15
<212>  RNA
<213>  Bacteriophage lambda

<400>  12
gcccugaaga agggc                                                        15


<210>  13
<211>  20
<212>  RNA
<213>  Bacteriophage phi-21

<400>  13
uucaccucua accgggugag                                                   20


<210>  14
<211>  20
<212>  RNA
<213>  Bacteriophage phi-21

<400>  14
ucucaaccua accguugaga                                                   20


<210>  15
<211>  17
<212>  RNA
<213>  Bacteriophage P22

<400>  15
accgcccaca acgcggu                                                      17


<210>  16
<211>  17
<212>  RNA
<213>  Bacteriophage P22

<400>  16
ugcgcugaca aagcgcg                                                      17


<210>  17
<211>  15
<212>  RNA
<213>  Bacteriophage H19B

<400>  17
ucgcugacaa agcga                                                        15


<210>  18
<211>  15
<212>  RNA
<213>  Bacteriophage H19B

<400>  18
gcgcugacaa agcgc                                                        15


<210>  19
<211>  15
<212>  RNA
<213>  Bacteriophage HK97

<400>  19
ucgcugacaa agcga                                                        15


<210>  20
<211>  15
<212>  RNA
<213>  Bacteriophage HK97

<400>  20
gcggucacaa agcgc                                                        15


<210>  21
<211>  15
<212>  RNA
<213>  Bacteriophage 933W

<400>  21
ucgcugacaa agcga                                                        15


<210>  22
<211>  15
<212>  RNA
<213>  Bacteriophage 933W

<400>  22
gcgcugacaa agcgc                                                        15


<210>  23
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  23
gccugaaaaa gggc                                                         14


<210>  24
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  24
gccuggaaaa gggc                                                         14


<210>  25
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  25
gccuguaaaa gggc                                                         14


<210>  26
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  26
gccugcaaaa gggc                                                         14


<210>  27
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  27
gccugagaaa gggc                                                         14


<210>  28
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  28
gccugaagaa gggc                                                         14


<210>  29
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  29
gccugaauaa gggc                                                         14


<210>  30
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  30
gccugaacaa gggc                                                         14


<210>  31
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  31
gccugaaaga gggc                                                         14


<210>  32
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  32
gccugaaaua gggc                                                         14


<210>  33
<211>  14
<212>  RNA
<213>  Bacteriophage lambda

<400>  33
gccugaaaca gggc                                                         14


<210>  34
<211>  17
<212>  RNA
<213>  Bacteriophage lambda

<400>  34
ggcccugaag aagggcu                                                      17


<210>  35
<211>  18
<212>  PRT
<213>  Bacteriophage phi-21

<400>  35

Gly Thr Ala Lys Ser Arg Tyr Lys Ala Arg Arg Ala Glu Leu Ile Ala 
1               5                   10                  15      


Glu Arg 
        


<210>  36
<211>  18
<212>  PRT
<213>  Bacteriophage P22

<400>  36

Gly Asn Ala Lys Thr Arg Arg His Glu Arg Arg Arg Lys Leu Ala Ile 
1               5                   10                  15      


Glu Arg 
        


<210>  37
<211>  22
<212>  PRT
<213>  Bacteriophage lambda

<400>  37

Met Asn Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp Lys Ala Ala Asn 
            20          


<210>  38
<211>  22
<212>  PRT
<213>  Bacteriophage lambda

<400>  38

Met Asn Ala Lys Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp Lys Ala Ala Asn 
            20          


<210>  39
<211>  22
<212>  PRT
<213>  Bacteriophage lambda

<400>  39

Met Asn Ala Arg Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp Lys Ala Ala Asn 
            20          


<210>  40
<211>  22
<212>  PRT
<213>  Bacteriophage lambda

<400>  40

Gly Asn Ala Arg Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala 
1               5                   10                  15      


Gln Trp Lys Ala Ala Asn 
            20          


<210>  41
<211>  22
<212>  PRT
<213>  Bacteriophage lambda

<400>  41

Gly Asn Ala Arg Thr Arg Arg Arg Glu Arg Arg Ala Met Glu Arg Ala 
1               5                   10                  15      


Thr Leu Pro Gln Val Leu 
            20          


<210>  42
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  42

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  43
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  43

Ala Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  44
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  44

Asp Ser Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  45
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  45

Asp Ala Gln Ala Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  46
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  46

Asp Ala Gln Thr Lys Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  47
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  47

Asp Ala Gln Thr Arg Arg Arg Ala Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  48
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  48

Asp Ala Gln Thr Arg Arg Arg Glu Lys Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  49
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  49

Asp Ala Gln Thr Arg Arg Arg Glu Arg Lys Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  50
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  50

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Gly Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  51
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  51

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Ala Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  52
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  52

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Pro Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  53
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  53

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Arg Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  54
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  54

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Gly Gln 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  55
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  55

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Ala 
1               5                   10                  15      


Trp Lys Ala Ala Asn 
            20      


<210>  56
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  56

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Phe Lys Ala Ala Asn 
            20      


<210>  57
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  57

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Tyr Lys Ala Ala Asn 
            20      


<210>  58
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  58

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Ala Ala Ala Asn 
            20      


<210>  59
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  59

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Gly Ala Asn 
            20      


<210>  60
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  60

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Gly Asn 
            20      


<210>  61
<211>  21
<212>  PRT
<213>  Bacteriophage lambda

<400>  61

Asp Ala Gln Thr Arg Arg Arg Glu Arg Arg Ala Glu Lys Gln Ala Gln 
1               5                   10                  15      


Trp Lys Ala Ala Ala 
            20      


<210>  62
<211>  18
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  synthetic peptide


<220>
<221>  MISC_FEATURE
<222>  (1)..(1)
<223>  Xaa at position 1 is any amino acid or is absent

<220>
<221>  MISC_FEATURE
<222>  (2)..(2)
<223>  Xaa at position 2 is Ala, Asp, Thr or Asn

<220>
<221>  MISC_FEATURE
<222>  (4)..(4)
<223>  Xaa at position 4 is Gln, Arg or Lys

<220>
<221>  MISC_FEATURE
<222>  (5)..(5)
<223>  Xaa at position 5 is Ala, Thr or Ser

<220>
<221>  MISC_FEATURE
<222>  (7)..(7)
<223>  Xaa at position 7 isTyr or Arg

<220>
<221>  MISC_FEATURE
<222>  (8)..(8)
<223>  Xaa at position 8 is Arg, Lys or His

<220>
<221>  MISC_FEATURE
<222>  (9)..(9)
<223>  Xaa at position 9 is Glu or Ala;

<220>
<221>  MISC_FEATURE
<222>  (12)..(18)
<223>  Xaa at positions 12 to 18 is any amino acid;

<400>  62

Xaa Xaa Ala Xaa Xaa Arg Xaa Xaa Xaa Arg Arg Xaa Xaa Xaa Xaa Xaa 
1               5                   10                  15      


Xaa Xaa 
        


<210>  63
<211>  35
<212>  PRT
<213>  Coliphage HK022

<400>  63

Asp Ser Gly Gln Asn Arg Lys Val Ser Asp Arg Gly Leu Thr Ser Arg 
1               5                   10                  15      


Asp Arg Arg Arg Ile Ala Arg Trp Glu Lys Arg Ile Ala Tyr Ala Leu 
            20                  25                  30          


Lys Asn Gly 
        35  


<210>  64
<211>  148
<212>  DNA
<213>  Bacillus anthracis

<400>  64
tcatcacact ttcacctttg tccactaagt caccttaatg atttaagtaa aagtttgcgg       60

ttgtgatgaa caaccgggag tcatccgccg aaatctcgat aaaccccacc tcgtcaactg      120

agcccttctt cagggcccag ttcggcgc                                         148


<210>  65
<211>  150
<212>  DNA
<213>  Bacillus anthracis

<400>  65
agatcatgtg atttctcttt gttcaaggag tcaccccctt ggtttgaaga aatccttacg       60

gctgtgatct gcacactcag ccgggaggca tccgccgaaa attcgataac ctccatcctc      120

gtcaactacc ggtaccggta gttcgggcgc                                       150


<210>  66
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  66
gctttaatac gactcactat agcagattga gggtctatga taccacccgg tacaggagat       60

atctgcagcg ccgaactggg cc                                                82


<210>  67
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  67
ggcccagttc ggcgctgcag atatctcctg taccgggtgg tatcatagac cctcaatctg       60

ctatagtgag tcgtattaaa gc                                                82


<210>  68
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide

<400>  68
tcacacagga aacagctatg acca                                              24


<210>  69
<211>  147
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  69
gcgccgaacu gggcccugaa gaagggcuca guugacgagg ugggguuuau cgagauuucg       60

gcggaugacu cccgguuguu caucacaacc gcaaacuuuu acuuaaauca uuaaggugac      120

uuaguggaca aaggugaaag ugugaug                                          147


<210>  70
<211>  175
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  70
gcgccgaacu gguaccauug cacuccggug ccaguugacg aggugggguu uaucgagauu       60

ucggcggaug acucccgguu guucaucaca accgcaaacu uuuacuuaaa ucauuaaggu      120

gacuuagugg acaaagguga aagugugaug accuugggcc cugaagaagg gcucg           175


<210>  71
<211>  198
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  71
gcgccgaacu gguaccauug cacuccggug ccaguugacg aggugggguu uaucgagauu       60

ucggcggaug acucccgguu guucaucaca accgcaaacu uuuacuuaaa ucauuaaggu      120

gacuuagugg acaaagguga aagugugaug accuugggcc cugaagaagg gcucuucucu      180

cgcccugaag aagggcgg                                                    198


<210>  72
<211>  147
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  72
gcgccgaacu gcgcgcagac aaugcgcgua guugacgagg ugggguuuau cgagauuucg       60

gcggaugacu cccgguuguu caucacaacc gcaaacuuuu acuuaaauca uuaaggugac      120

uuaguggaca aaggugaaag ugugaug                                          147


<210>  73
<211>  157
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  73
gcgccgaacu ggcuggcgcg cagacaaugc gcgucagcca guugacgagg ugggguuuau       60

cgagauuucg gcggaugacu cccgguuguu caucacaacc gcaaacuuuu acuuaaauca      120

uuaaggugac uuaguggaca aaggugaaag ugugaug                               157


<210>  74
<211>  157
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  74
gcgccgaacu ggcuggggcc cugaagaagg gcuccagcca guugacgagg ugggguuuau       60

cgagauuucg gcggaugacu cccgguuguu caucacaacc gcaaacuuuu acuuaaauca      120

uuaaggugac uuaguggaca aaggugaaag ugugaug                               157


<210>  75
<211>  147
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Synthetic RNA construct

<400>  75
gcgccgaacu gggcccugaa gaagggcuca guugacgagg uagacguuau cgagauuucg       60

gcggaugcgu cucgguuguu caucacaacc gcaaacuuuu acuuaaauca uuaaggugac      120

uuaguggaca aaggugaaag ugugaug                                          147


