                         SEQUENCE LISTING

<110>  The Government of the United States of America as 
       Represented by the Secretary of the Department of Health and 
       Human Services
       Tong, Suxiang
 
<120>  METHODS OF DETECTING INFLUENZA VIRUS

<130>  6395-88863-02

<150>  US 61/642,098
<151>  2012-05-03

<160>  10    

<170>  PatentIn version 3.5

<210>  1
<211>  2274
<212>  DNA
<213>  Influenza A virus

<400>  1
atgaatgtca atccgactct acttttccta aaggttccag tgcaaaatgc cataagcacc       60

acattccctt atactggaga tcctccatac agccatggaa caggaacagg atacaccatg      120

gacacagtca acagaacaca ccaatattca gaaaaaggga aatggactac aaacacagag      180

actggggcac cccagctcaa cccgattgat ggaccactac ctgaagataa tgaaccgagt      240

ggatatgcac aaacagactg tgtcctggaa gccatggctt tccttgaaga atcccaccca      300

gggatatttg agaattcatg ccttgagaca atggagattg tccaacaaac aagggtggat      360

aaactaactc aaggtcgcca gacttatgat tggacattaa acagaaatca accggctgca      420

actgcattgg ccaacaccat agaagttttt agatcaaatg gtctaacagc taatgagtca      480

ggaaggctga tagatttcct aaaggatgta atggaatcaa tggataaaga ggaaatagag      540

ataacaacac actttcaaag gaaaaggaga gtaagagaca acatgaccaa gaagatggtc      600

acacaaagaa caatagggaa gaaaaaacaa agagtgaata agagaagtta tctaataaga      660

gcactgacat tgaatacgat gaccaaagat gcagaaagag gcaaattaaa aaggagggcc      720

atcgcaacac ctgggatgca aatcagaggg ttcgtgtact ttgttgagat tttagctaga      780

agcatttgcg aaaagcttga acagtccgga ctcccagtag ggggcaatga aaagaaagcc      840

aaattggcaa atgttgtgag aaagatgatg accaattcac aagacacaga gctttctttc      900

acaatcactg gagacaacac taaatggaat gaaaaccaaa atcctcgaat gttcctggcg      960

atgattactt acatcaccag aaatcaaccc gagtggttca gaaacatact gagtatggca     1020

ccgataatgt tctcaaacaa aatggcaaga ctaggaaaag ggtacatgtt cgagagtaaa     1080

agaatgaagc tccgaacaca gataccagca gaaatgctag caagcattga cctgaagtat     1140

ttcaatgaat caacaaggaa gaaaattgag aaaataaggc ctctcctaat aaatggcaca     1200

gcatcattga gtcctggaat gatgatgggc atgttcaata tgctaagtac ggttttggga     1260

gtctcaatac taaatcttgg acaaaagaaa tacaccagga caacatactg gtgggatgga     1320

ctccaatctt ccgacgattt tgccctcata gtaaattcac caaatcatga gggaatacaa     1380

gcaggagtgg atagattcta caggacatgc aagttagtag ggatcaacat gagcaaaaag     1440

aagtcctata taaataaaac tgggacattt gaattcacaa gcttttttta tcgctatggg     1500

tttgtagcta attttagcat ggaactgccc agttttggag tgtctggaat aaacgaatca     1560

gctgatatga gtattgggat aacagtgata aagaacaaca tgataaataa tgatcttgga     1620

cctgcaacag cccagatggc ccttcagtta ttcatcaaag actacagata cacatataga     1680

tgtcatagag gggacacaca aattcagacg agaagatcat tcgagctaaa aagcctgtgg     1740

gatcaaaccc aatcgaaggc aggattatta gtatctgatg gaggaccgaa tttatacaat     1800

atccggaatc ttcacattcc tgaagtctgc ttaaaatggg aactaatgga tgaggattat     1860

aggggtagac tttgtaatcc tctgaacccc tttgtcagcc acaaagagat tgattctgtc     1920

aacagtgctg tggtgatgcc agcccatggt ccagccaaaa gtatggaata tgatgccgtt     1980

gcaaccacac actcctggat tcccaagaga aaccgctcta ttctcaacac aagccaaagg     2040

ggaattcttg aagatgaaca gatgtaccag aagtgttgta acctgttcga gaaatttttc     2100

cctagtagtt catacaggag accggttgga atttctagca tggtggaggc catggtgtct     2160

agggcccgga ttgatgccag gattgatttc gagtctggac ggattaagaa agaagagttc     2220

tctgagatca tgaagatctg ttccaccatt gaagaactca gacggcaaaa gtaa           2274


<210>  2
<211>  2368
<212>  DNA
<213>  Influenza B virus

<400>  2
agcagaagcg gagctttaag atgaatataa atccatattt tcttttcata gatgtaccta       60

tacaggcagc aatttcaaca acattcccat acaccggtgt tcccccttat tctcatggaa      120

cgggaacagg ctacacaata gacaccgtga ttagaacaca cgagtactca aacaagggaa      180

aacaatacat ttctgatgtt acaggatgtg taatggtaga tccaacaaat gggccattac      240

ccgaagacaa tgaaccgagt gcctatgcac aattggattg tgttctggag gctttggata      300

gaatggatga agaacatcca ggtctgtttc aagcagggtc acagaatgcc atggaggcac      360

taatggtcac aacagtggac aaattgactc aggggagaca gacctttgat tggacggtgt      420

gtagaaacca acctgctgca acggcactga acacaacaat aacctctttt aggttgaatg      480

atttaaatgg agccgacaag ggtggattag tgcccttttg ccaagatatc attgattcat      540

tagacaaacc tgaaatgatt ttcttcacag taaagaatat aaagaaaaaa ttgcctgcta      600

aaaacagaaa gggtttcctt ataaaaagaa tacctatgaa ggtaaaagac agaataacaa      660

gagtggaata catcaaaaga gcattatcat taaacacaat gactaaagat gctgaaagag      720

gcaaactaaa aagaagagca attgccaccg ctgggataca aatcagagga tttgtattag      780

tagttgaaaa cttggctaaa aatatctgtg aaaatctaga gcaaagtggt ttacccgtag      840

gtggaaacga aaagaaggcc aaactatcaa atgcagtggc taaaatgctc agtaattgtc      900

caccaggagg gatcagtatg actgtgacag gagacaatac taaatggaat gaatgcttaa      960

atccaagaat ctttttggct atgactgaaa gaataaccag agacagccca atttggttcc     1020

gggatttttg tagtatagca ccggtcttgt tctccaataa aatagctaga ttgggaaaag     1080

ggttcatgat aacaagtaaa acaaaaagac taaaagctca aataccttgt cccgatctgt     1140

ttaatatacc attagaaaga tataatgaag aaacaagggc aaaactgaaa aagctaaaac     1200

ctttcttcaa tgaagaagga acggcatctc tttcgccagg aatgatgatg ggaatgttta     1260

atatgctatc tacagtatta ggagtagccg cactagggat aaaaaacatt ggaaacaaag     1320

aatacttatg ggatggactg cagtcttcgg atgattttgc tctgtttgtt aatgcaaaag     1380

atgaagagac atgtatggaa ggaataaacg atttttaccg aacatgtaag ctattgggaa     1440

taaacatgag caaaaagaaa agttactgta atgaaactgg gatgtttgaa tttaccagca     1500

tgttttacag agatggattt gtatctaatt ttgcaatgga actcccttca tttggagtcg     1560

ctggagtgaa tgaatcagca gacatggcaa taggaatgac aataataaag aacaatatga     1620

tcaacaatgg gatgggccca gcaacggcac aaacagccat acaattattc atagctgact     1680

atagatacac ctacaaatgc cacaggggag attccaaagt ggaagggaag agaatgaaaa     1740

ttataaagga gctatgggaa aacactaaag gaagagatgg tctattagta gcagatggtg     1800

ggcctaatct ttacaatttg agaaacctgc atattccaga aataatatta aaatacaaca     1860

taatggaccc tgagtacaaa ggacggttac tgcatcctca aaatcccttt gtaggacatt     1920

tgtctattga gggtatcaaa gaagcagata taacacctgc acatggccca ataaagaaaa     1980

tggactacga tgcggtatct ggaactcata gttggagaac caaaaggaac agatctatac     2040

taaacactga tcagaggaac atgattcttg aggaacaatg ctacgctaag tgttgcaacc     2100

tttttgaggc ttgctttaac agtgcgtcat acaggaaacc agtaggccag cacagcatgc     2160

ttgaagctat ggcccacaga ttaagaatgg atgcacgact ggactatgag tcaggaagga     2220

tgtcaaaaga ggatttcgaa aaagcaatgg ctcaccttgg tgagattggg tacatgtaag     2280

ctccggaaat gtctatgggg ttattggtca tcgttgaata catgcggtgc acaaatgatt     2340

aaaatgaaaa aaggctcgtg tttctact                                        2368


<210>  3
<211>  2363
<212>  DNA
<213>  Influenza C virus

<400>  3
agcagaagca gaggattatg gaaatcaacc catatttgat gtttctaaac aacgacgtta       60

catcgctgat atcaacaaca tacccctata cagggccacc tccaatgtca catggatcat      120

caaccaaata cactttggaa actattaaaa gaacatatga ctactcaaga acatcagttg      180

aaaaaacatc gaaggttttc aatataccaa gaagaaagtt ttgcaattgt cttgaagaca      240

aagatgattt ggtaaaacca acaggaaacg ttgatatcag ttccttgttg ggccttgcag      300

agatgatgga gaaaagaatg ggagaaggat tttttaagca ttgtgtaatg gaggcagaaa      360

cagaaatact taaaatgcac ttctctagac ttacggaagg aagacaaaca tatgattgga      420

cttctgaaag aaacatgcca gcggccactg ctttgcaact gacagttgat gccataaaag      480

aaacagaagg accatttaaa gggacaacaa tgcttgaata ttgcaataaa atgatagaaa      540

tgcttgattg gaaagaagtt aaattcagaa aagtcaaaac aatggtgaga agggagaaag      600

ataaaagaag tgggaaggag ataaaaacta aagtacctgt aatgggaatt gactcaatta      660

aacatgatga gtttttaatt agagcattaa ctattaatac catggccaaa gatggggaaa      720

gagggaaatt gcaaagaaga gcaattgcaa cacccggtat gatagtaaga ccattttcaa      780

aaattgttga aactgtagca cagaaaatat gtgagaaatt gaaagaaagc ggtctacctg      840

ttggtggtaa tgagaagaaa gcaaaactta agaccactgt tacttctctc aatgccagga      900

tgaacagtga tcagtttgca gttaatataa ctggagacaa tagtaaatgg aatgaatgcc      960

aacaacctga ggcttattta gcacttttgg cttacatcac caaagactcc tctgatttaa     1020

tgaaagactt atgcagtgtt gctccagtac ttttctgtaa taagtttgtg aaacttggac     1080

aaggaataag actttcaaat aaaagaaaaa caaaggaagt cataataaaa gctgagaaaa     1140

tgggaaaata caagaatcta atgagagaag aatataaaaa cctttttgaa cccttagaaa     1200

aatatattca gaaggatgtc tgttttttac ctggaggaat gcttatggga atgttcaaca     1260

tgctgtcaac agttcttgga gtgagtacat tatgttatat ggatgaagaa ctaaaagcca     1320

aaggatgttt ttggactgga ctccaatctt ctgatgactt tgttcttttt gcagttgctt     1380

caaactggtc aaatatacat tggacaataa gacggtttaa tgctgtatgc aagttaattg     1440

gtataaacat gtctcttgaa aaatcgtatg gttctctccc agaactcttt gaatttacaa     1500

gtatgttctt tgatggagaa tttgtgtcca atcttgctat ggaattgcca gctttcacta     1560

ctgcaggagt taatgaagga gttgatttta cagctgcaat gtcaattatt aagacaaata     1620

tgataaataa cagcttatca ccttctactg ctttaatggc cttaaggata tgtctccaag     1680

aatttagagc gacttataga gtccatcctt gggattcaaa agtgaaaggt gggagaatga     1740

aaataataaa tgagttcata aagaccatag aaagtaaaga tggattatta attgctgatg     1800

gtgggaaact gatgaacaac attagcaccc ttcatattcc tgaggaagta ctgaagtttg     1860

aaaaaatgga tgaacaatat agaaataggg tattcaaccc caaaaatccc tttactaact     1920

ttgacaaaac tatcgatata tttagagcac atggcccaat aagggttgaa gaaaatgaag     1980

cagtagtttc aactcatagc ttcagaacca gagcaaacag aaccctattg aatacagata     2040

tgagagcaat gatggcagaa gagaaaagat atcaaatggt ttgcgacata tttaaaagcg     2100

tgtttgaatc agcggacata aatcctccaa ttggggctat gagcattgga gaggccatag     2160

aagagaaact attagagaga gctaaaatga aaagagacat tggggcaata gaagattcag     2220

aatatgaaga aataaaagac attataaggg atgcaaagaa agctagaatt gaaagtagat     2280

gaggaggggc tgttaaaccc tttcctccta cttgcacata tttttgttat tccattaaat     2340

gaaaaaatcc tcttgctact gct                                             2363


<210>  4
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide primer


<220>
<221>  misc_feature
<222>  (3)..(3)
<223>  n is inosine

<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is inosine

<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is a, c, g, and t

<400>  4
acnggagaca anacnaaatg gaatga                                            26


<210>  5
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide primer


<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is inosine

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is a, c, g, and t

<220>
<221>  misc_feature
<222>  (24)..(24)
<223>  n is a, c, g, and t

<400>  5
actgttgaca gcatnttnaa catnccc                                           27


<210>  6
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide primer

<400>  6
ccattatgag ggtccccact                                                   20


<210>  7
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide primer

<400>  7
ggatgtgctc gttgatgca                                                    19


<210>  8
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide probe

<400>  8
tcccagctgc tccagctctt ctt                                               23


<210>  9
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide primer


<220>
<221>  misc_feature
<222>  (12)..(12)
<223>  n is inosine

<220>
<221>  misc_feature
<222>  (24)..(24)
<223>  n is a, c, g, and t

<400>  9
ccagttggag gnaatgaraa gaangc                                            26


<210>  10
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic oligonucleotide primer


<220>
<221>  misc_feature
<222>  (15)..(15)
<223>  n is inosine

<220>
<221>  misc_feature
<222>  (24)..(24)
<223>  n is a, c, t, and g

<400>  10
cattcattcc atttngtrtt rtcncc                                            26


