                         SEQUENCE LISTING

<110>  The Rockefeller University
 
<120>  Transcriptional Gene Silencing of Endogenes in Plants

<130>  2312-130PCT

<150>  US 61/698,203
<151>  2012-09-07

<160>  55    

<170>  PatentIn version 3.5

<210>  1
<211>  475
<212>  DNA
<213>  Arabidopsis thaliana

<400>  1
tgttgctcca tgggcatgtg cttttcgtat gcacagacca cgcgtccgtt tattcagatt       60

ctcgtgttac aacaaaataa tgattttaag gttcagaatc aaacatatga aactttttat      120

caattgctat ctacggtttg ttacaaaaac aaatacagtg cccagttcaa aatacaaatt      180

gaataatagc ccaacatatc gtaaatggga aaatgggctc agcccaaata aaaaaaaagt      240

aaacgataag gagacgtcgg gtcccgttca cgaagcggtc ggatctaggg cccaacacaa      300

gacgaatgaa gggaatatct cgtgaaagca ataaatgcag aaatcgagaa tcatgaattt      360

tatttatttc gctcctcgag ttatcccgtg aaagtcataa agacattgcg aacgttttta      420

tggacccacc aattgtttct tcagaattat acatatacac actgacaatt tcgaa           475


<210>  2
<211>  449
<212>  DNA
<213>  Arabidopsis thaliana

<400>  2
aatttttgta aaaaaaatcc aaattcttct aaaattaagt ttttaataga aatttaaaaa       60

gacagttcta catcatatta ttttctttaa ataatgatat aaaatttata aactattatc      120

tttgtaagat aatgaatatt tatacctatg taagggaaaa attgataaat atttatacat      180

cctcatccaa aagcccataa aatcgttatg ggacaatagt aaaaaagatt gcaaaatcgt      240

atggagcgaa agataaaaat aaaaaacggt cccgtgtaag aagatgggtc acctcgccaa      300

cacgtagact cttttcacgc gccaaatcaa acaccatgtc gacgagatca acggattcaa      360

atgtttcgtg taatacacgc tccaacgtag cgcgtcgtac acttgatgct taatttatgt      420

attttaagtt acgcagtttc cagattttc                                        449


<210>  3
<211>  1025
<212>  DNA
<213>  Arabidopsis thaliana

<400>  3
ttggataaaa ccctaaatga attctttttt caggaatcca taaatggtca tgaaatgaaa       60

tgcattctca ggctggaaat aatcgaccat tatattattg cacaaaaaag tgaactctag      120

tatcataact ctgaaattat tatgattgct ggttactgaa ttttgtaagc ctttcataat      180

aacgaattta ccaattggga gatcgaataa tcttatcgtt gttacagacg atattttttt      240

gtcgattata ttatgaaact tgtggtagtc aacctttttt tttccaaacg gagacgtcat      300

ctttttgttt ttatatttag agatgatctg accaaaaata aacaaataga catccgatat      360

tttacattgt tttatatata tataaagata aagcttaatg acgagtattc aatgataaac      420

gataagatta cgggaaaaat aattaaacgg ataaaaatgg ccctacccgt tgtgcattac      480

agttcttggt taagaaatac tattaaactg tctctcaaat ctcaatatat aaatgaatac      540

attctatacg tacaaagata aatttatctc tatgttcatg tgtcaaagtg gtagtgaatc      600

tagtgacgtt attgattaat caagattact tttatctttc tgtgcaaaat ttcaagatta      660

ctctaaagtc gatatatgct actatgacgt agttttggga caattacgta tagaatcata      720

aaaacaataa gcagaataat aatccattta agtacattgt gaatttgtga taatggaatt      780

atttgacaat acttttccaa aataaaaact aatttaatta ctgtattaat tattttagta      840

aaacaatatt ttcattacaa tgtttgttgt gaatccaaaa aagtattgtt tccaaagaac      900

tcaaatgaca tcaatatgtc tataataacc tcgtgtagct gtatgttaga atctagccga      960

attgttttat tgttgtcggt gtacgcaaca aacgaaccac acatactttg aaacgtggca     1020

caata                                                                 1025


<210>  4
<211>  1067
<212>  DNA
<213>  Arabidopsis thaliana

<400>  4
aaattagtca ttcaacaaaa gaaaaggacg aacgcagtga cttaacatga aactgtgagc       60

ggcccaaaat catttatgta atggaccctt aacttttcat gcacacgatt tttctcattt      120

atatgttttt ctgctctctt tttttcctct ttatcattac tttaatttat tttatgttct      180

tttttcgaag caccataatt gtatgctttc accaaataat ccaaatttag aatcattaat      240

atgtcaaaaa agaattgcat atattcaata aaacgtaatg ctaagtagta caatgcatgt      300

attatacaaa atgtaatgat atagatccaa cgtatatatc aaagtggacc aaaatatatc      360

ttatgtatta gacgagttta ctatgcaaaa tttatgattc tattccgcat ggagcgtgct      420

aatactactt cgaacccctt tgagaccaat atgtgattct atattctatc tagtacaaat      480

tatgagaagt atatacgtac gatgagagta taaaacattt caatatttgt atagagagga      540

caccacttgg ttgacttgac ccacgataag atattgaaga aaccaaactt gtatagtacg      600

aattcgaaat cgtaattgat gatgcgattc gacaagtcca ggggctccct cccacgcgca      660

atgggcccag caaccacgtg tggccactag agagaataaa ccattagccc acgtgatctt      720

gggcccaatc aatctctccc tcacattaaa cgacaaaaca aaagctcttc tgggttaaat      780

tgataaatat caaaacttta aaggtaattt gctaaaatcg ccacacaaaa aaagtcgcag      840

aaaatatatg aggaaacaaa aagcgaagac gacaaaaaaa aaaaaaactc tgattttttt      900

ttgttatctc tctctatctg agaggcacac attttgcttc gtcttcttca atttatttta      960

ttggtttctc cacttatctc cgatctcaat tctccccatt ttcttcttcc tcaagttcaa     1020

aattcttgag aatttagctc taccagaatt cgtctccgat aactagt                   1067


<210>  5
<211>  34
<212>  DNA
<213>  Arabidopsis thaliana

<400>  5
gggagctcgt aatcaggatc ctaggtgttt cctg                                   34


<210>  6
<211>  25
<212>  DNA
<213>  Arabidopsis thaliana

<400>  6
caaaccgcct ctccccgggc gttgg                                             25


<210>  7
<211>  26
<212>  DNA
<213>  Arabidopsis thaliana

<400>  7
cgcgtctgga tccccgggca tgtccc                                            26


<210>  8
<211>  23
<212>  DNA
<213>  Arabidopsis thaliana

<400>  8
gtgcctaggg ttctcccgtt tcg                                               23


<210>  9
<211>  27
<212>  DNA
<213>  Arabidopsis thaliana

<400>  9
ccgctcatga tcttgatccc ctgcgcc                                           27


<210>  10
<211>  26
<212>  DNA
<213>  Arabidopsis thaliana

<400>  10
gtaaaaatac tctagaccgg cctctc                                            26


<210>  11
<211>  32
<212>  DNA
<213>  Arabidopsis thaliana

<400>  11
gacacgtatt agatctgttg ctccatgggc at                                     32


<210>  12
<211>  26
<212>  DNA
<213>  Arabidopsis thaliana

<400>  12
ggactagttt cgaaattgtc agtgtg                                            26


<210>  13
<211>  25
<212>  DNA
<213>  Arabidopsis thaliana

<400>  13
gttcctaggt gttgctccat gggca                                             25


<210>  14
<211>  27
<212>  DNA
<213>  Arabidopsis thaliana

<400>  14
gaatgagatc ttcgaaattg tcagtgt                                           27


<210>  15
<211>  20
<212>  DNA
<213>  Arabidopsis thaliana

<400>  15
aaaataatga ttttaaggtt                                                   20


<210>  16
<211>  20
<212>  DNA
<213>  Arabidopsis thaliana

<400>  16
aattcatatc rtrccatttc                                                   20


<210>  17
<211>  23
<212>  DNA
<213>  Arabidopsis thaliana

<400>  17
aagyaagtgg attgatgtga tat                                               23


<210>  18
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  18
cctaaaactt caracacrra tcta                                              24


<210>  19
<211>  23
<212>  DNA
<213>  Arabidopsis thaliana

<400>  19
gtggaggatg aggagaaagc tga                                               23


<210>  20
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  20
ataggtgctg gaccgtaccg gaag                                              24


<210>  21
<211>  23
<212>  DNA
<213>  Arabidopsis thaliana

<400>  21
ctaatctttg ttttgatgct ttc                                               23


<210>  22
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  22
ctgtatttgt ttttgtaaca aacc                                              24


<210>  23
<211>  20
<212>  DNA
<213>  Arabidopsis thaliana

<400>  23
gagttatccc gtgaaagtca                                                   20


<210>  24
<211>  22
<212>  DNA
<213>  Arabidopsis thaliana

<400>  24
gaatatttgg cggaagaatt ca                                                22


<210>  25
<211>  22
<212>  DNA
<213>  Arabidopsis thaliana

<400>  25
catcagacgg ctgtacgact gc                                                22


<210>  26
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  26
ctgtatttgt ttttgtaaca aacc                                              24


<210>  27
<211>  21
<212>  DNA
<213>  Arabidopsis thaliana

<400>  27
ctcgagttat cccgtgaaag t                                                 21


<210>  28
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  28
cggaggtgat cacagtgaaa gatc                                              24


<210>  29
<211>  42
<212>  DNA
<213>  Arabidopsis thaliana

<400>  29
taatacgact cactataggg gtaagatgac acgtattaca tg                          42


<210>  30
<211>  20
<212>  DNA
<213>  Arabidopsis thaliana

<400>  30
ttatttgggc tgagcccatt                                                   20


<210>  31
<211>  42
<212>  DNA
<213>  Arabidopsis thaliana

<400>  31
taatacgact cactataggg aaaaaaagta aacgataagg ag                          42


<210>  32
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  32
gtgtgaatgc ggtttaggtt cgaa                                              24


<210>  33
<211>  40
<212>  DNA
<213>  Arabidopsis thaliana

<400>  33
taatacgact cactataggg ggtttaggtt cgaaattgtc                             40


<210>  34
<211>  22
<212>  DNA
<213>  Arabidopsis thaliana

<400>  34
aaaaaaagta aacgataagg ag                                                22


<210>  35
<211>  40
<212>  DNA
<213>  Arabidopsis thaliana

<400>  35
taatacgact cactataggg ttatttgggc tgagcccatt                             40


<210>  36
<211>  22
<212>  DNA
<213>  Arabidopsis thaliana

<400>  36
gtaagatgac acgtattaca tg                                                22


<210>  37
<211>  38
<212>  DNA
<213>  Arabidopsis thaliana

<400>  37
ggtctcgaga tctttggata aaaccctaaa tgaattct                               38


<210>  38
<211>  35
<212>  DNA
<213>  Arabidopsis thaliana

<400>  38
catggatccc actagtattg tgccacgttt caaag                                  35


<210>  39
<211>  31
<212>  DNA
<213>  Arabidopsis thaliana

<400>  39
cgtatccagg tcttaagtag tgatgatgaa t                                      31


<210>  40
<211>  30
<212>  DNA
<213>  Arabidopsis thaliana

<400>  40
cttgtgacaa ttaggtacga gttgctgtag                                        30


<210>  41
<211>  32
<212>  DNA
<213>  Arabidopsis thaliana

<400>  41
agcctcgaga atttttgtaa aaaaaatcca aa                                     32


<210>  42
<211>  32
<212>  DNA
<213>  Arabidopsis thaliana

<400>  42
agcggatccg aaaatctgga aactgcgtaa ct                                     32


<210>  43
<211>  32
<212>  DNA
<213>  Arabidopsis thaliana

<400>  43
agcctcgagg aaaatctgga aactgcgtaa ct                                     32


<210>  44
<211>  32
<212>  DNA
<213>  Arabidopsis thaliana

<400>  44
agcggatcca atttttgtaa aaaaaatcca aa                                     32


<210>  45
<211>  25
<212>  DNA
<213>  Arabidopsis thaliana

<400>  45
caaattrtcc aaaaaaataa ttacc                                             25


<210>  46
<211>  24
<212>  DNA
<213>  Arabidopsis thaliana

<400>  46
gagagttyaa agataattgt tttt                                              24


<210>  47
<211>  26
<212>  DNA
<213>  Arabidopsis thaliana

<400>  47
tggaagatgg actgttaacc aagatg                                            26


<210>  48
<211>  27
<212>  DNA
<213>  Arabidopsis thaliana

<400>  48
tgagtctcaa catcattttg ttacagc                                           27


<210>  49
<211>  31
<212>  DNA
<213>  Arabidopsis thaliana

<400>  49
ggtctcgaga aattagtcat tcaacaaaag a                                      31


<210>  50
<211>  31
<212>  DNA
<213>  Arabidopsis thaliana

<400>  50
gtagagctca ctagttatcg gagacgaatt c                                      31


<210>  51
<211>  34
<212>  DNA
<213>  Arabidopsis thaliana

<400>  51
caccgagctc actagttatc ggagacgaat tctg                                   34


<210>  52
<211>  31
<212>  DNA
<213>  Arabidopsis thaliana

<400>  52
ctcggatcca aattagtcat tcaacaaaag a                                      31


<210>  53
<211>  395
<212>  DNA
<213>  Tobacco rattle virus

<400>  53
atgtcccgaa gacattaaac tacggttctt taagtagatc cgtgtctgaa gttttaggtt       60

caatttaaac ctacgagatt gacattctcg actgatcttg attgatcggt aagtcttttg      120

taatttaatt ttctttttga ttttatttta aattgttatc tgtttctgtg tatagactgt      180

ttgagatcgg cgtttggccg actcattgtc ttaccatagg ggaacggact ttgtttgtgt      240

tgttatttta tttgtatttt attaaaattc tcaacgatct gaaaaagcct cgcggctaag      300

agattgttgg ggggtgagta agtactttta aagtgatgat ggttacaaag gcaaaagggg      360

taaaacccct cgcctacgta agcgttatta cgccc                                 395


<210>  54
<211>  799
<212>  DNA
<213>  Arabidopsis thaliana

<400>  54
cgccctgagt gcttgcggca gcgtgaagct tgcatgcctg caggtcaaca tggtggagca       60

cgacactctc gtctactcca agaatatcaa agatacagtc tcagaagacc agagggctat      120

tgagactttt caacaaaggg taatatcggg aaacctcctc ggattccatt gcccagctat      180

ctgtcacttc atcgaaagga cagtagaaaa ggaagatggc ttctacaaat gccatcattg      240

cgataaagga aaggctatcg ttcaagatgc ctctaccgac agtggtccca aagatggacc      300

cccacccacg aggaacatcg tggaaaaaga agacgttcca accacgtctt caaagcaagt      360

ggattgatgt gatggtcaac atggtggagc acgacactct cgtctactcc aagaatatca      420

aagatacagt ctcagaagac cagagggcta ttgagacttt tcaacaaagg gtaatatcgg      480

gaaacctcct cggattccat tgcccagcta tctgtcactt catcgaaagg acagtagaaa      540

aggaagatgg cttctacaaa tgccatcatt gcgataaagg aaaggctatc gttcaagatg      600

cctctaccga cagtggtccc aaagatggac ccccacccac gaggaacatc gtggaaaaag      660

aagacgttcc aaccacgtct tcaaagcaag tggattgatg tgatatctcc actgacgtaa      720

gggatgacgc acaatcccac tatccttcgc aagacccttc ctctatataa ggaagttcat      780

ttcatttgga gaggccggt                                                   799


<210>  55
<211>  263
<212>  DNA
<213>  Arabidopsis thaliana

<400>  55
caaaagccat gcacaacaac acgtactcac aaaggcgtca atcgagcagc ccaaaacatt       60

caccaactca acccatcatg agcccacaca tttgttgttt ctaacccaac ctcaaactcg      120

tattctcttc cgccacctca tttttgttta tttcaacacc cgtcaaactg catcccaccc      180

cgtggccaaa tgttcatgca tgttaacaag acctatgact ataaatatct gcaatctcgg      240

cccaagtttt catcatcaag aac                                              263


