                         SEQUENCE LISTING

<110>  BROWN, DENNIS T.
       HERNANDEZ, RAQUEL
 
<120>  ATTENUATED CHIKUNGUNYA VIRUS

<130>  CLFR.P0397WO

<140>  Unknown
<141>  2013-09-26

<150>  61/706,589
<151>  2012-09-27

<160>  25    

<170>  PatentIn version 3.5

<210>  1
<211>  423
<212>  PRT
<213>  Chikungunya virus

<400>  1

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Ser Val Ala Ser Phe Val Leu Leu Ser Met Val Gly Thr 
    370                 375                 380                 


Ala Val Gly Met Cys Val Cys Ala Arg Arg Arg Cys Ile Thr Pro Tyr 
385                 390                 395                 400 


Glu Leu Thr Pro Gly Ala Thr Val Pro Phe Leu Leu Ser Leu Leu Cys 
                405                 410                 415     


Cys Val Arg Thr Thr Lys Ala 
            420             


<210>  2
<211>  1269
<212>  DNA
<213>  Chikungunya virus

<400>  2
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtgtcggtgg cctcgttcgt gcttctgtcg     1140

atggtgggca cagcagtggg aatgtgtgtg tgcgcacggc gcagatgcat tacaccatat     1200

gaattaacac caggagccac tgttcccttc ctgctcagcc tgctatgctg cgtcagaacg     1260

accaaggcg                                                             1269


<210>  3
<211>  414
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  recombinant polypeptide

<400>  3

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Met Val Gly Thr Ala Val Gly Met Cys Val Cys Ala Arg 
    370                 375                 380                 


Arg Arg Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro 
385                 390                 395                 400 


Phe Leu Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala 
                405                 410                 


<210>  4
<211>  1242
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  recombinant polynucleotide

<400>  4
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtgatggtgg gcacagcagt gggaatgtgt     1140

gtgtgcgcac ggcgcagatg cattacacca tatgaattaa caccaggagc cactgttccc     1200

ttcctgctca gcctgctatg ctgcgtcaga acgaccaagg cg                        1242


<210>  5
<211>  414
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  recombinant polypeptide

<400>  5

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Ser Val Gly Thr Ala Val Gly Met Cys Val Cys Ala Arg 
    370                 375                 380                 


Arg Arg Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro 
385                 390                 395                 400 


Phe Leu Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala 
                405                 410                 


<210>  6
<211>  1242
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  recombinant polynucleotide

<400>  6
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtgtcggtgg gcacagcagt gggaatgtgt     1140

gtgtgcgcac ggcgcagatg cattacacca tatgaattaa caccaggagc cactgttccc     1200

ttcctgctca gcctgctatg ctgcgtcaga acgaccaagg cg                        1242


<210>  7
<211>  414
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  recombinant polypeptide

<400>  7

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Ser Val Gly Thr Ala Val Gly Met Cys Val Cys Ala Arg 
    370                 375                 380                 


Arg Arg Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro 
385                 390                 395                 400 


Phe Leu Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala 
                405                 410                 


<210>  8
<211>  1242
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  recombinant polynucleotide

<400>  8
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtgtcggtgg gcacagcagt gggaatgtgt     1140

gtgtgcgcac ggcgcagatg cattacacca tatgaattaa caccaggagc cactgttccc     1200

ttcctgctca gcctgctatg ctgcgtcaga acgaccaagg cg                        1242


<210>  9
<211>  423
<212>  PRT
<213>  Chikungunya virus

<400>  9

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Val 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Asn His Met Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Phe Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Ser Cys Thr His Pro 
        115                 120                 125             


Phe His His Asp Pro Pro Val Ile Gly Arg Glu Lys Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Thr Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Ser Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Gln Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Val Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Lys Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Ile Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Glu Glu Pro 
    290                 295                 300                 


Asn Tyr Gln Glu Glu Trp Val Met His Lys Lys Glu Val Val Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Leu Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Val Val Ser Val Ala Thr Phe Ile Leu Leu Ser Met Val Gly Met 
    370                 375                 380                 


Ala Ala Gly Met Cys Met Cys Ala Arg Arg Arg Cys Ile Thr Pro Tyr 
385                 390                 395                 400 


Glu Leu Thr Pro Gly Ala Thr Val Pro Phe Leu Leu Ser Leu Ile Cys 
                405                 410                 415     


Cys Ile Arg Thr Ala Lys Ala 
            420             


<210>  10
<211>  1269
<212>  DNA
<213>  Chikungunya virus

<400>  10
agcaccaagg acaacttcaa tgtctataaa gccacaagac catacttagc tcactgtccc       60

gactgtggag aagggcactc gtgccatagt cccgtagcac tagaacgcat cagaaatgaa      120

gcgacagacg ggacgctgaa aatccaggtc tccttgcaaa tcggaataaa gacggatgac      180

agccacgatt ggaccaagct gcgttatatg gacaaccaca tgccagcaga cgcagagagg      240

gcggggctat ttgtaagaac atcagcaccg tgtacgatta ctggaacaat gggacacttc      300

atcctggccc gatgtccaaa aggggaaact ctgacggtgg gattcactga cagtaggaag      360

attagtcatt catgtacgca cccatttcac cacgaccctc ctgtgatagg tcgggaaaaa      420

ttccattccc gaccgcagca cggtaaagag ctaccttgca gcacgtacgt gcagagcacc      480

gccgcaacta ccgaggagat agaggtacac atgcccccag acacccctga tcgcacatta      540

atgtcacaac agtccggcaa cgtaaagatc acggtcaatg gccagacggt gcggtacaag      600

tgtaattgcg gtggctcaaa tgaaggacaa acaactacag acaaagtgat taataactgc      660

aaggttgatc aatgtcatgc cgcggtcacc aatcacaaaa agtggcagta taactcccct      720

ctggtcccgc gtaatgctga acttggggac cgaaaaggaa aaattcacat cccgtttccg      780

ctggcaaatg taacatgcag ggtgcctaaa gcaaggaacc ccaccgtgac gtacgggaaa      840

aaccaagtca tcatgctact gtatcctgac cacccaacac tcctgtccta ccggaatatg      900

ggagaagaac caaactatca agaagagtgg gtgatgcata agaaggaagt cgtgctaacc      960

gtgccgactg aagggctcga ggtcacgtgg ggcaacaacg agccgtataa gtattggccg     1020

cagttatcta caaacggtac agcccatggc cacccgcatg agataattct gtattattat     1080

gagctgtacc ctactatgac tgtagtagtt gtgtcagtgg ccacgttcat actcctgtcg     1140

atggtgggta tggcagcggg gatgtgcatg tgtgcacgac gcagatgcat cacaccgtat     1200

gaactgacac caggagctac cgtccctttc ctgcttagcc taatatgctg catcagaaca     1260

gctaaagcg                                                             1269


<210>  11
<211>  423
<212>  PRT
<213>  Chikungunya virus

<400>  11

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Val 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Asn His Met Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Phe Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Ser Cys Thr His Pro 
        115                 120                 125             


Phe His His Asp Pro Pro Val Ile Gly Arg Glu Lys Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Thr Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Ser Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asp Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Val Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Lys Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Ile Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Glu Glu Pro 
    290                 295                 300                 


Asn Tyr Gln Glu Glu Trp Val Met His Lys Lys Glu Val Val Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Leu Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Val Val Ser Val Ala Thr Phe Ile Leu Leu Ser Met Val Gly Met 
    370                 375                 380                 


Ala Ala Gly Met Cys Met Cys Ala Arg Arg Arg Cys Ile Thr Pro Tyr 
385                 390                 395                 400 


Glu Leu Thr Pro Gly Ala Thr Val Pro Phe Leu Leu Ser Leu Ile Cys 
                405                 410                 415     


Cys Ile Arg Thr Ala Lys Ala 
            420             


<210>  12
<211>  1260
<212>  DNA
<213>  Chikungunya virus

<400>  12
agcaccaagg acaacttcaa tgtctataaa gccacaagac catacttagc tcactgtccc       60

gactgtggag aagggcactc gtgccatagt cccgtagcac tagaacgcat cagaaatgaa      120

gcgacagacg ggacgctgaa aatccaggtc tccttgcaaa tcggaataaa gacggatgat      180

agccacgatt ggaccaagct gcgttatatg gacaaccaca tgccagcaga cgcagagagg      240

gcggggctat ttgtaagaac atcagcaccg tgtacgatta ctggaacaat gggacacttc      300

atcctggccc gatgtccaaa aggggaaact ctgacggtgg gattcactga cagtaggaag      360

attagtcact catgtacgca cccatttcac cacgaccctc ctgtgatagg tcgggaaaaa      420

ttccattccc gaccgcagca cggtaaagag ctaccttgca gcacgtacgt gcagagcacc      480

gccgcaacta ccgaggagat agaggtacac atgcccccag acacccctga tcgcacatta      540

atgtcacaac agtccggcaa cgtaaagatc acagtcaatg gccagacggt gcggtacaag      600

tgtaattgcg gtggctcaga tgaaggacta acaactacag acaaagtgat taataactgc      660

aaggttgatc aatgtcatgc cgcggtcacc aatcacaaaa agtggcagta taactcccct      720

ctggtcccgc gtaatgctga acttggggac cgaaaaggaa aaattcacat cccgtttccg      780

ctggcaaatg taacatgcag ggtgcctaaa gcaaggaacc ccaccgtgac gtacgggaaa      840

aaccaagtca tcatgctact gtatcctgac cacccaacac tcctgtccta ccggaatatg      900

ggagaagaac caaactatca agaagagtgg gtgatgcata agaaggaagt cgtgctaacc      960

gtgccgactg aagggctcga ggtcacgtgg ggcaacaacg agccgtataa gtattggccg     1020

cagttatcta caaacggtac agcccatggc cacccgcatg agataattct gtattattat     1080

gagctgtacc ccactatgac tgtagtagtt gtgtcagtgg ccacgttcat actcctgtcg     1140

atggtgggta tggcagcggg gatgtgcatg tgtgcacgac gcagatgcat cacaccgtat     1200

gaactgacac caggagctac cgtccctttc ctgcttagcc taatatgctg catcagaaca     1260


<210>  13
<211>  26
<212>  PRT
<213>  Sindbis virus

<400>  13

Val Tyr Thr Ile Leu Ala Val Ala Ser Ala Thr Val Ala Met Met Ile 
1               5                   10                  15      


Gly Val Thr Val Ala Val Leu Cys Ala Cys 
            20                  25      


<210>  14
<211>  26
<212>  PRT
<213>  Chikungunya virus

<400>  14

Thr Met Thr Val Val Ile Val Ser Val Ala Ser Phe Val Leu Leu Ser 
1               5                   10                  15      


Met Val Gly Thr Ala Val Gly Met Cys Val 
            20                  25      


<210>  15
<211>  413
<212>  PRT
<213>  Chikungunya virus

<400>  15

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Val Gly Thr Ala Val Gly Met Cys Val Cys Ala Arg Arg 
    370                 375                 380                 


Arg Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro Phe 
385                 390                 395                 400 


Leu Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala 
                405                 410             


<210>  16
<211>  1239
<212>  DNA
<213>  Chikungunya virus

<400>  16
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtggtgggca cagcagtggg aatgtgtgtg     1140

tgcgcacggc gcagatgcat tacaccatat gaattaacac caggagccac tgttcccttc     1200

ctgctcagcc tgctatgctg cgtcagaacg accaaggcg                            1239


<210>  17
<211>  413
<212>  PRT
<213>  Chikungunya virus

<400>  17

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Ser Val Thr Ala Val Gly Met Cys Val Cys Ala Arg Arg 
    370                 375                 380                 


Arg Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro Phe 
385                 390                 395                 400 


Leu Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala 
                405                 410             


<210>  18
<211>  1239
<212>  DNA
<213>  Chikungunya virus

<400>  18
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtgtcggtga cagcagtggg aatgtgtgtg     1140

tgcgcacggc gcagatgcat tacaccatat gaattaacac caggagccac tgttcccttc     1200

ctgctcagcc tgctatgctg cgtcagaacg accaaggcg                            1239


<210>  19
<211>  413
<212>  PRT
<213>  Chikungunya virus

<400>  19

Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala Thr Arg Pro Tyr Leu 
1               5                   10                  15      


Ala His Cys Pro Asp Cys Gly Glu Gly His Ser Cys His Ser Pro Ile 
            20                  25                  30          


Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp Gly Thr Leu Lys Ile 
        35                  40                  45              


Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp Asp Ser His Asp Trp 
    50                  55                  60                  


Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro Ala Asp Ala Glu Arg 
65                  70                  75                  80  


Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys Thr Ile Thr Gly Thr 
                85                  90                  95      


Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys Gly Glu Thr Leu Thr 
            100                 105                 110         


Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His Thr Cys Thr His Pro 
        115                 120                 125             


Phe His His Glu Pro Pro Val Ile Gly Arg Glu Arg Phe His Ser Arg 
    130                 135                 140                 


Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr Tyr Val Gln Ser Thr 
145                 150                 155                 160 


Ala Ala Thr Ala Glu Glu Ile Glu Val His Met Pro Pro Asp Thr Pro 
                165                 170                 175     


Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn Val Lys Ile Thr Val 
            180                 185                 190         


Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys Gly Gly Ser Asn Glu 
        195                 200                 205             


Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn Cys Lys Ile Asp Gln 
    210                 215                 220                 


Cys His Ala Ala Val Thr Asn His Lys Asn Trp Gln Tyr Asn Ser Pro 
225                 230                 235                 240 


Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg Lys Gly Lys Ile His 
                245                 250                 255     


Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg Val Pro Lys Ala Arg 
            260                 265                 270         


Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val Thr Met Leu Leu Tyr 
        275                 280                 285             


Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn Met Gly Gln Glu Pro 
    290                 295                 300                 


Asn Tyr His Glu Glu Trp Val Thr His Lys Lys Glu Val Thr Leu Thr 
305                 310                 315                 320 


Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly Asn Asn Glu Pro Tyr 
                325                 330                 335     


Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr Ala His Gly His Pro 
            340                 345                 350         


His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr Pro Thr Met Thr Val 
        355                 360                 365             


Val Ile Val Ser Gly Thr Ala Val Gly Met Cys Val Cys Ala Arg Arg 
    370                 375                 380                 


Arg Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro Phe 
385                 390                 395                 400 


Leu Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala 
                405                 410             


<210>  20
<211>  1239
<212>  DNA
<213>  Chikungunya virus

<400>  20
agtactaagg acaattttaa tgtctataaa gccacaagac catatctagc tcattgtcct       60

gactgcggag aagggcattc gtgccacagc cctatcgcat tggagcgcat cagaaatgaa      120

gcaacggacg gaacgctgaa aatccaggtc tctttgcaga tcgggataaa gacagatgac      180

agccacgatt ggaccaagct gcgctatatg gatagccata cgccagcgga cgcggagcga      240

gccggattgc ttgtaaggac ttcagcaccg tgcacgatca ccgggaccat gggacacttt      300

attctcgccc gatgcccgaa aggagagacg ctgacagtgg gatttacgga cagcagaaag      360

atcagccaca catgcacaca cccgttccat catgaaccac ctgtgatagg tagggagagg      420

ttccactctc gaccacaaca tggtaaagag ttaccttgca gcacgtacgt gcagagcacc      480

gctgccactg ctgaggagat agaggtgcat atgcccccag atactcctga ccgcacgctg      540

atgacgcagc agtctggcaa cgtgaagatc acagttaatg ggcagacggt gcggtacaag      600

tgcaactgcg gtggctcaaa cgagggactg acaaccacag acaaagtgat caataactgc      660

aaaattgatc agtgccatgc tgcagtcact aatcacaaga attggcaata caactcccct      720

ttagtcccgc gcaacgctga actcggggac cgtaaaggaa agatccacat cccattccca      780

ttggcaaacg tgacttgcag agtgccaaaa gcaagaaacc ctacagtaac ttacggaaaa      840

aaccaagtca ccatgctgct gtatcctgac catccgacac tcttgtctta ccgtaacatg      900

ggacaggaac caaattacca cgaggagtgg gtgacacaca agaaggaggt taccttgacc      960

gtgcctactg agggtctgga ggtcacttgg ggcaacaacg aaccatacaa gtactggccg     1020

cagatgtcta cgaacggtac tgctcatggt cacccacatg agataatctt gtactattat     1080

gagctgtacc ccactatgac tgtagtcatt gtgtcgggca cagcagtggg aatgtgtgtg     1140

tgcgcacggc gcagatgcat tacaccatat gaattaacac caggagccac tgttcccttc     1200

ctgctcagcc tgctatgctg cgtcagaacg accaaggcg                            1239


<210>  21
<211>  13826
<212>  DNA
<213>  Chikungunya virus

<400>  21
atggctgcgt gagacacacg tagcctacca gtttcttact gctctactct gcttagcaag       60

agacttgaga acccatcatg gatcccgtgt acgtggacat agacgccgac agcgcctttt      120

taaaggccct gcagcgtgcg taccccatgt ttgaggtgga accaaggcag gtcacaccga      180

atgaccatgc caatgctaga gcattctcgc atctagctat aaaactaata gagcaggaaa      240

ttgatcccga ctcaaccatc ctggacatag gcagcgcgcc agcaaggagg atgatgtcgg      300

ataggaagta ccactgcgtt tgccctatgc gcagcgcaga agaccctgag agactcgcca      360

actacgcgag aaaactagca tctgccgcag gaaaagtctt ggacagaaac atctccgaaa      420

aaattggaga tctacaagca gtaatggctg taccagacgc agaaacgccc acattctgct      480

tgcacactga cgtctcatgt agacaaaggg cggacgtcgc tatataccag gatgtctacg      540

ccgtgcatgc accaacatcg ctgtaccacc aggcgattaa aggagtccgt gtagcatact      600

ggatagggtt tgatacaacc ccgttcatgt ataatgccat ggcaggtgca tacccctcgt      660

actcgacaaa ctgggcagat gagcaggtgc tgaaggcaaa gaacatagga ttatgttcaa      720

cagacctgac ggaaggtaga cgaggtaaat tgtctatcat gagaggaaaa aagatgaagc      780

catgtgaccg cgtactgttc tcagtcgggt caacgcttta cccggagagc cgtaagcttc      840

ttaagagttg gcacttacct tcagtgttcc atctaaaagg gaagctcagc ttcacgtgcc      900

gctgtgatac agtggtttcg tgtgaaggct atgtcgttaa gagaataacg attagcccgg      960

gcctctacgg taaaaccaca gggtacgcag taacccacca tgcagacgga ttcctaatgt     1020

gcaaaacaac cgatacggta gatggcgaga gagtgtcatt ttcggtatgc acgtacgtac     1080

ccgcaaccat ttgtgatcaa atgacaggta ttcttgccac ggaggttaca ccggaggatg     1140

cacagaagct gctggtggga ctgaaccaga ggatagtggt caatggcaga acgcagagga     1200

acacgaacac aatgaagaat tacttgcttc ctgtagttgc ccaagccctc agtaagtggg     1260

caaaggaatg ccggaaagat atggaagatg aaaaactttt gggcatcaga gaaaggacac     1320

tgacatgctg ctgcctttgg gcgttcaaga agcagaagac acacacggtc tacaagaggc     1380

ctgacactca gtcaattcag aaagtcccag ccgaatttga cagctttgtg gtaccaagtc     1440

tgtggtcatc tggactgtcg atcccgctac ggaccagaat caagtggctg ctaagcaaag     1500

tgccaaagac tgatttgatc ccttacagcg gtgacgccaa agaagcccgc gacgctgaaa     1560

aagaagcaga agaagaacga gaagcggagc taactcgcga ggcactacca ccactacagg     1620

cggcacagga cgacgtccag gtcgaaattg acgtggaaca gctcgaagac agagctgggg     1680

caggaataat tgaaactcca agaggagcta tcaaagtcac tgcccaacca acagaccacg     1740

tcgtgggaga gtacttggta ctttccccgc agaccgtgtt acgaagccag aagctcagcc     1800

tgatccacgc attggcggaa caagtgaaga catgcacaca cagcggacgg gcaggaaggt     1860

acgcggtcga agcatatgac ggcagaatcc ttgtgccctc aggctatgca atatcacctg     1920

aagacttcca gagcctgagc gaaagtgcga cgatggtgta caacgaaagg gagttcgtaa     1980

ataggaaatt acaccatatc gcgttgcacg gaccagccct gaacactgac gaggagtcgt     2040

acgagctggt aagggcagaa aggacagagc atgagtacgt ctatgatgtg gaccaaagaa     2100

ggtgctgcaa gaaagaggag gcagccgggc tggtactggt cggcgacttg accaacccgc     2160

cctaccatga gttcgcatat gaagggctga gaatccgccc cgcctgccca tacaagaccg     2220

cagtaatagg ggtctttgga gtgccaggat ccggcaaatc agcaatcatt aagaacctag     2280

ttaccaggca agacctagtg accagtggaa agaaagaaaa ctgccaagaa atctccaccg     2340

acgtgatgcg acagaggaac ctggagatat ctgcacgcac ggtcgactca ctgctcttga     2400

acggatgcaa tagaccagtc gacgtgttgt acgtcgacga agcttttgcg tgccattctg     2460

gcacgctact tgctctgata gccttggtga gaccgaggca gaaagtcgtg ctatgcggtg     2520

atccgaaaca gtgcggcttc ttcaatatga tgcagatgaa agttaactac aaccataaca     2580

tctgcaccca agtgtaccat aaaagtattt ccaggcggtg tacactgcct gtgactgcca     2640

ttgtgtcctc gttgcattac gaaggcaaaa tgcgcacaac aaatgagtac aacaagccaa     2700

ttgtagtgga tactacaggc tcgacaaaac ccgaccccgg agaccttgtg ctaacatgtt     2760

tcagagggtg ggttaagcaa ctgcaaattg actatcgtgg acacgaggtc atgacagcag     2820

ctgcatctca ggggctaacc agaaaagggg tctatgccgt caggcaaaaa gttaatgaaa     2880

acccccttta cgcatcaaca tcagagcacg tgaacgtgct actgacgcgt acggaaggca     2940

aactagtatg gaagacactt tctggagacc catggataaa gacactgcag aacccgccga     3000

aaggaaattt taaagcaaca attaaggaat gggaagtgga acatgcttca ataatggcgg     3060

gtatctgtaa ccaccaagtg acctttgaca cgttccagaa taaagccaat gtctgctggg     3120

cgaagagctt agtccccatc ctagaaacag cagggataaa attaaacgac aggcagtggt     3180

cccagataat ccaggctttt aaagaagaca gagcatactc acccgaggtg gccctgaatg     3240

agatatgcac gcgcatgtac ggggtagacc tggacagcgg actgttctct aaaccactgg     3300

tgtccgtgca tcatgcggat aatcactggg acaacaggcc gggagggaag atgttcggat     3360

tcaaccccga agcggcgtcc atactggaga ggaaataccc gtttacaaaa gggaagtgga     3420

ataccaacaa gcaaatctgt gtgactacta ggaggattga agattttaac ccgaacacca     3480

acattatacc tgccaacagg agattaccgc attcattggt ggccgaacat cgcccggtaa     3540

aaggggagag gatggaatgg ttggtcaaca aaataaatgg ccaccatgtg ctcctggtca     3600

gcggctacaa cctcgttctg cccactaaga gagtcacctg ggtggcgccg ctgggcattc     3660

ggggagctga ctacacatac aacctagagt taggcctacc agcaacgctc ggtagatatg     3720

acctagtgat tataaacatc cacacaccct ttcgcataca tcattaccaa cagtgcgtgg     3780

atcacgcaat gaagctgcag atgctcggag gagactccct gagactgctc aagccgggtg     3840

gttcattact gatcagggca tacggctacg cagacagaac aagcgaacga gtagtctgcg     3900

tattgggacg caagtttcga tcatccagag cgttgaaacc gccgtgcgtc actagcaaca     3960

ccgagatgtt tttcttgttc agcaactttg ataacggcag aaggaacttt acgacgcacg     4020

taatgaacaa ccagctgaat gctgcttttg ttggtcaggc cacccgagca gggtgcgcac     4080

cgtcgtaccg ggttaaacgc atggacatcg caaagaacga tgaagagtgt gtagtcaacg     4140

ccgccaaccc tcgtgggcta ccaggcgatg gcgtctgtaa agcagtatac aaaaaatggc     4200

cggagtcctt caagaacagt gcaacaccag tgggaaccgc aaagacagtc atgtgcggta     4260

catacccggt aatccatgca gtaggaccta atttctcaaa ttactctgag tccgaaggag     4320

accgggaatt ggcagctgct taccgagaag tcgctaagga ggtgactaga ctaggagtaa     4380

acagcgtagc tataccgctc ctttccaccg gtgtgtactc tggagggaaa gacaggctga     4440

ctcagtcact aaaccacctt tttacagcat tagactcaac tgatgcagat gtggttatct     4500

actgccgcga caaggagtgg gagaagaaaa tagctgaggc catacaaatg aggacccaag     4560

tggaattact agacgaacac atctctgtag actgcgatat catccgagtg caccctgaca     4620

gcagtttggc aggtagaaaa gggtacagca ctacagaagg ttcactgtac tcctacttgg     4680

aagggacacg gttccatcag acggcagtgg acatggcaga agtatacacc atgtggccaa     4740

agcagacgga ggctaatgaa caagtttgct tgtacgcatt gggggaaagt atagaatcaa     4800

tcaggcaaaa gtgcccagtg gatgacgcag atgcatcgtc gcccccaaaa accgtcccgt     4860

gcctctgccg ttatgccatg acacccgaac gagtcaccag gcttcgtatg aaccatgtca     4920

caagcataat agtatgctca tcattccccc ttccaaagta taaaatagaa ggagtgcaga     4980

aagtcaagtg ttctaaagtg atgctgttcg accataacgt gccatcacgc gttagtccaa     5040

gggaatataa atcgcctcag gagaccgcac aagaagtaag ttcgaccacg tcactgacgc     5100

acagccaatt cgaccttagc gttgacggtg aggaactgcc cgctccgtct gacttggaag     5160

ctgacgctcc gattccggaa ccaacaccag acgacagagc ggtacttact ttgcctccca     5220

cgattgataa tttttcggct gtgtcagact gggtaatgaa taccgcgcca gtcgcaccac     5280

ccagaagaag acgtgggaaa aacttgaatg tcacctgcga cgagagagaa gggaacgtac     5340

ttcccatggc tagcgttcgg ttcttcagag cggatctgca ctccatcgta caggaaacgg     5400

cagagatacg cgatacggcc gcgtccctcc aggcgcccct gagtgtcgct acagaaccga     5460

atcaactgcc gatctcattt ggagcaccaa acgagacttt ccccataacg ttcggggatt     5520

ttgatgaagg ggagattgaa agcttgtcct ctgagttact gacctttggg gacttctcgc     5580

cgggcgaagt ggatgacctg acagacagcg actggtccac gtgttcagac acggacgacg     5640

aattatgact agatagggca ggtgggtaca tattctcatc tgacaccggc cccggccacc     5700

tgcaacagag gtctgtccgt cagacagtac tgccggtaaa taccttggag gaagttcagg     5760

aggagaaatg ttacccacct aagttggatg aagtgaaaga gcagttgtta cttaagaaac     5820

tccaggaaag tgcgtccatg gctaacagaa gcaggtacca atcccgcaaa gtagagaaca     5880

tgaaagcaac aatagtccaa aggctgaagg gtggttgcaa actttattta atgtcggaga     5940

ccccgaaagt tcctacctac cgaactacat atccggcacc agtgtactca cccccaatca     6000

atatccgact gtccaacccc gagtctgctg tggcagcgtg caatgagttc ctagcaagga     6060

actatccgac agttgcgtcg taccaaatca ccgatgagta cgatgcatac ctagacatgg     6120

tggacgggtc ggaaagttgc cttgaccggg cgacgttcaa cccatcaaag cttagaagtt     6180

atccaaaaca gcactcctac catgcaccca caatcagaag tgccgtacct tccccgttcc     6240

agaacacgct gcagaacgta ctggctgctg ccacgaaaag aaattgcaac gtcacacaga     6300

tgagagaact gcctactttg gattcagcgg tatttaatgt tgagtgcttt aaaaaatttg     6360

cgtgcaatca agaatactgg aaggaatttg ccgccagccc tattaggata acgactgaga     6420

acttgacaac ttatgtcaca aaactaaaag gaccaaaagc agcagcactg tttgccaaga     6480

cacataacct gctaccactg caggaggtgc cgatggacag gtttactgta gacatgaaaa     6540

gggacgtgaa ggtgactccg gggacgaagc acactgagga aagacctaaa gtgcaggtca     6600

tacaggcagc cgaacctttg gcaacagcat atctgtgtgg gatccacaga gagttggtca     6660

gaaggctgaa tgcagtcctt ctacctaatg tacacacgct gtttgacatg tctgccgagg     6720

actttgacgc cattattgcc gcgcacttca agccggggga cgccgtattg gaaaccgata     6780

tagcctcctt tgacaagagc caagacgact cattggcgct cactgctcta atgttgctag     6840

aggatttggg ggtggatcat cccctgttgg acttgataga ggctgccttc ggggagatct     6900

ccagctgcca cctaccgacg ggcacccgtt ttaagttcgg cgccatgatg aagtctggta     6960

tgttcctaac cctgttcgtc aacacactgc taaacatcac catagccagc cgagtgctgg     7020

aggaccgctt gacaaggtct gcgtgcgcgg ccttcatcgg cgacgacaat ataatacatg     7080

gggttgtctc tgacgaactg atggcagcaa ggtgtgctac atggatgaac atggaagtga     7140

agatcataga tgcggtcgtg tctcagaaag ccccgtactt ctgcggaggg tttatactgt     7200

atgacacagt agcaggcacg gcctgcagag tggcagaccc gctaaagcgg ctgttcaagc     7260

tgggcaaacc gctggcagcg ggagatgaac aagacgacga cagaagacgt gcactggctg     7320

acgaagtggt tagatggcaa cgaacaggac taactgatga gctagaaaaa gcggtacact     7380

ccaggtatga agtgcagggc atatctgtcg tggtaatgtc tatggccacc tttgcaagct     7440

ctagatctaa ctttgagaag ctcagaggac ccgtcgtaac cctgtacggt ggtcctaaat     7500

aggtacgcac tacagctacc tatttcgtca gaaaccaatc gcagctactt gcatacctac     7560

cagctacaat ggagttcatc ccgacgcaaa ctttctataa cagaaggtac caaccccgac     7620

cctgggcccc acgccctaca attcaagtaa ttagacctag accacgtcca cagaggcagg     7680

ctgggcaact cgcccagctg atctccgcag tcaacaaatt gaccatgcgc gcggtacctc     7740

aacagaagcc tcgcagaaat cggaaaaaca agaagcaaag gcagaagaag caggcgccgc     7800

aaaacgaccc aaagcaaaag aagcaaccac cacaaaagaa gccggctcaa aagaagaaga     7860

aaccaggccg tagggagaga atgtgcatga aaattgaaaa tgattgcatc ttcgaagtca     7920

agcatgaagg caaagtgatg ggctacgcat gcctggtggg ggataaagta atgaaaccag     7980

cacatgtgaa gggaactatc gacaatgccg atctggctaa actggccttt aagcggtcgt     8040

ctaaatacga tcttgaatgt gcacagatac cggtgcacat gaagtctgat gcctcgaagt     8100

ttacccacga gaaacccgag gggtactata actggcatca cggagcagtg cagtattcag     8160

gaggccggtt cactatcccg acgggtgcag gcaagccggg agacagcggc agaccgatct     8220

tcgacaacaa aggacgggtg gtggccatcg tcctaggagg ggccaacgaa ggtgcccgca     8280

cggccctctc cgtggtgacg tggaacaaag acatcgtcac aaaaattacc cctgagggag     8340

ccgaagagtg gagcctcgcc ctcccggtct tgtgcctgtt ggcaaacact acattcccct     8400

gctctcagcc gccttgcaca ccctgctgct acgaaaagga accggaaagc accttgcgca     8460

tgcttgagga caacgtgatg agacccggat actaccagct actaaaagca tcgctgactt     8520

gctctcccca ccgccaaaga cgcagtacta aggacaattt taatgtctat aaagccacaa     8580

gaccatatct agctcattgt cctgactgcg gagaagggca ttcgtgccac agccctatcg     8640

cattggagcg catcagaaat gaagcaacgg acggaacgct gaaaatccag gtctctttgc     8700

agatcgggat aaagacagat gacagccacg attggaccaa gctgcgctat atggatagcc     8760

atacgccagc ggacgcggag cgagccggat tgcttgtaag gacttcagca ccgtgcacga     8820

tcaccgggac catgggacac tttattctcg cccgatgccc gaaaggagag acgctgacag     8880

tgggatttac ggacagcaga aagatcagcc acacatgcac acacccgttc catcatgaac     8940

cacctgtgat aggtagggag aggttccact ctcgaccaca acatggtaaa gagttacctt     9000

gcagcacgta cgtgcagagc accgctgcca ctgctgagga gatagaggtg catatgcccc     9060

cagatactcc tgaccgcacg ctgatgacgc agcagtctgg caacgtgaag atcacagtta     9120

atgggcagac ggtgcggtac aagtgcaact gcggtggctc aaacgaggga ctgacaacca     9180

cagacaaagt gatcaataac tgcaaaattg atcagtgcca tgctgcagtc actaatcaca     9240

agaattggca atacaactcc cctttagtcc cgcgcaacgc tgaactcggg gaccgtaaag     9300

gaaagatcca catcccattc ccattggcaa acgtgacttg cagagtgcca aaagcaagaa     9360

accctacagt aacttacgga aaaaaccaag tcaccatgct gctgtatcct gaccatccga     9420

cactcttgtc ttaccgtaac atgggacagg aaccaaatta ccacgaggag tgggtgacac     9480

acaagaagga ggttaccttg accgtgccta ctgagggtct ggaggtcact tggggcaaca     9540

acgaaccata caagtactgg ccgcagatgt ctacgaacgg tactgctcat ggtcacccac     9600

atgagataat cttgtactat tatgagctgt accccactat gactgtagtc attgtgtcgg     9660

tggcctcgtt cgtgcttctg tcgatggtgg gcacagcagt gggaatgtgt gtgtgcgcac     9720

ggcgcagatg cattacacca tatgaattaa caccaggagc cactgttccc ttcctgctca     9780

gcctgctatg ctgcgtcaga acgaccaagg cggccacata ttacgaggct gcggcatatc     9840

tatggaacga acagcagccc ctgttctggt tgcaggctct tatcccgctg gccgccttga     9900

tcgtcctgtg caactgtctg aaactcttgc catgctgctg taagaccctg gcttttttag     9960

ccgtaatgag catcggtgcc cacactgtga gcgcgtacga acacgtaaca gtgatcccga    10020

acacggtggg agtaccgtat aagactcttg tcaacagacc gggttacagc cccatggtgt    10080

tggagatgga gctacaatca gtcaccttgg aaccaacact gtcacttgac tacatcacgt    10140

gcgagtacaa aactgtcatc ccctccccgt acgtgaagtg ctgtggtaca gcagagtgca    10200

aggacaagag cctaccagac tacagctgca aggtctttac tggagtctac ccatttatgt    10260

ggggcggcgc ctactgcttt tgcgacgccg aaaatacgca attgagcgag gcacatgtag    10320

agaaatctga atcttgcaaa acagagtttg catcggccta cagagcccac accgcatcgg    10380

cgtcggcgaa gctccgcgtc ctttaccaag gaaacaacat taccgtagct gcctacgcta    10440

acggtgacca tgccgtcaca gtaaaggacg ccaagtttgt cgtgggccca atgtcctccg    10500

cctggacacc ttttgacaac aaaatcgtgg tgtacaaagg cgacgtctac aacatggact    10560

acccaccttt tggcgcagga agaccaggac aatttggtga cattcaaagt cgtacaccgg    10620

aaagtaaaga cgtttatgcc aacactcagt tggtactaca gaggccagca gcaggcacgg    10680

tacatgtacc atactctcag gcaccatctg gcttcaagta ttggctgaag gaacgaggag    10740

catcgctaca gcacacggca ccgttcggtt gccagattgc gacaaacccg gtaagagctg    10800

taaattgcgc tgtggggaac ataccaattt ccatcgacat accggatgcg gcctttacta    10860

gggttgtcga tgcaccctct gtaacggaca tgtcatgcga agtaccagcc tgcactcact    10920

cctccgactt tgggggcgtc gccatcatca aatacacagc tagcaagaaa ggtaaatgtg    10980

cagtacattc gatgaccaac gccgttacca ttcgagaagc cgacgtagaa gtagagggga    11040

actcccagct gcaaatatcc ttctcaacag ccctggcaag cgccgagttt cgcgtgcaag    11100

tgtgctccac acaagtacac tgcgcagccg catgccaccc tccaaaggac cacatagtca    11160

attacccagc atcacacacc acccttgggg tccaggatat atccacaacg gcaatgtctt    11220

gggtgcagaa gattacggga ggagtaggat taattgttgc tgttgctgcc ttaattttaa    11280

ttgtggtgct atgcgtgtcg tttagcaggc actaaaccga tgataaggca cgaaataact    11340

aaatagcaaa agtagaaagt acataaccag gtatatgtgc cccttaagag gcacaatata    11400

tatagctaag cactattaga tcaaagggct atacaacccc tgaatagtaa caaaacacaa    11460

aaaccaataa aaatcataaa aagaaaaatc tcataaacag gtataagtgt cccctaagag    11520

acacattgta tgtaggtagt aagtatagat caaagggcta tattaacccc tgaatagtaa    11580

caaaacacaa aaacaataaa aactacaaaa tagaaaatct ataaacaaaa gtagttcaaa    11640

gggctacaaa acccctgaat agtaacaaaa cataaaatgt aataaaaatt aagtgtgtac    11700

ccaaaagagg tacagtaaga atcagtgaat atcacaattg gcaacgagaa gagacgtagg    11760

tatttaagct tcctaaaagc agccgaactc actttgagac gtaggcatag cataccgaac    11820

tcttccacta ttctccgaac ccacagggac gtaggagatg ttattttgtt tttaatattt    11880

caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa agcggccgct taattaatcg    11940

aggggaatta attcttgaag acgaaagggc caggtggcac ttttcgggga aatgtgcgcg    12000

gaacccctat ttgtttattt ttctaaatac attcaaatat gtatccgctc atgagacaat    12060

aaccctgata aatgcttcaa taatattgaa aaaggaagag tatgagtatt caacatttcc    12120

gtgtcgccct tattcccttt tttgcggcat tttgccttcc tgtttttgct cacccagaaa    12180

cgctggtgaa agtaaaagat gctgaagatc agttgggtgc acgagtgggt tacatcgaac    12240

tggatctcaa cagcggtaag atccttgaga gttttcgccc cgaagaacgt tttccaatga    12300

tgagcacttt taaagttctg ctatgtggcg cggtattatc ccgtgttgac gccgggcaag    12360

agcaactcgg tcgccgcata cactattctc agaatgactt ggttgagtac tcaccagtca    12420

cagaaaagca tcttacggat ggcatgacag taagagaatt atgcagtgct gccataacca    12480

tgagtgataa cactgcggcc aacttacttc tgacaacgat cggaggaccg aaggagctaa    12540

ccgctttttt gcacaacatg ggggatcatg taactcgcct tgatcgttgg gaaccggagc    12600

tgaatgaagc cataccaaac gacgagcgtg acaccacgat gcctgtagca atggcaacaa    12660

cgttgcgcaa actattaact ggcgaactac ttactctagc ttcccggcaa caattaatag    12720

actggatgga ggcggataaa gttgcaggac cacttctgcg ctcggccctt ccggctggct    12780

ggtttattgc tgataaatct ggagccggtg agcgtgggtc tcgcggtatc attgcagcac    12840

tggggccaga tggtaagccc tcccgtatcg tagttatcta cacgacgggg agtcaggcaa    12900

ctatggatga acgaaataga cagatcgctg agataggtgc ctcactgatt aagcattggt    12960

aactgtcaga ccaagtttac tcatatatac tttagattga tttaaaactt catttttaat    13020

ttaaaaggat ctaggtgaag atcctttttg ataatctcat gaccaaaatc ccttaacgtg    13080

agttttcgtt ccactgagcg tcagaccccg tagaaaagat caaaggatct tcttgagatc    13140

ctttttttct gcgcgtaatc tgctgcttgc aaacaaaaaa accaccgcta ccagcggtgg    13200

tttgtttgcc ggatcaagag ctaccaactc tttttccgaa ggtaactggc ttcagcagag    13260

cgcagatacc aaatactgtc cttctagtgt agccgtagtt aggccaccac ttcaagaact    13320

ctgtagcacc gcctacatac ctcgctctgc taatcctgtt accagtggct gctgccagtg    13380

gcgataagtc gtgtcttacc gggttggact caagacgata gttaccggat aaggcgcagc    13440

ggtcgggctg aacggggggt tcgtgcacac agcccagctt ggagcgaacg acctacaccg    13500

aactgagata cctacagcgt gagcattgag aaagcgccac gcttcccgaa gggagaaagg    13560

cggacaggta tccggtaagc ggcagggtcg gaacaggaga gcgcacgagg gagcttccag    13620

ggggaaacgc ctggtatctt tatagtcctg tcgggtttcg ccacctctga cttgagcgtc    13680

gatttttgtg atgctcgtca ggggggcgga gcctatggaa aaacgccagc aacgcgagct    13740

cgtatggaca tattgtcgtt agaacgcggc tacaattaat acataacctt atgtatcata    13800

cacaatcgat ttaggtgaca ctatag                                         13826


<210>  22
<211>  2474
<212>  PRT
<213>  Chikungunya virus


<220>
<221>  misc_feature
<222>  (1857)..(1857)
<223>  Xaa can be any naturally occurring amino acid

<400>  22

Met Asp Pro Val Tyr Val Asp Ile Asp Ala Asp Ser Ala Phe Leu Lys 
1               5                   10                  15      


Ala Leu Gln Arg Ala Tyr Pro Met Phe Glu Val Glu Pro Arg Gln Val 
            20                  25                  30          


Thr Pro Asn Asp His Ala Asn Ala Arg Ala Phe Ser His Leu Ala Ile 
        35                  40                  45              


Lys Leu Ile Glu Gln Glu Ile Asp Pro Asp Ser Thr Ile Leu Asp Ile 
    50                  55                  60                  


Gly Ser Ala Pro Ala Arg Arg Met Met Ser Asp Arg Lys Tyr His Cys 
65                  70                  75                  80  


Val Cys Pro Met Arg Ser Ala Glu Asp Pro Glu Arg Leu Ala Asn Tyr 
                85                  90                  95      


Ala Arg Lys Leu Ala Ser Ala Ala Gly Lys Val Leu Asp Arg Asn Ile 
            100                 105                 110         


Ser Glu Lys Ile Gly Asp Leu Gln Ala Val Met Ala Val Pro Asp Ala 
        115                 120                 125             


Glu Thr Pro Thr Phe Cys Leu His Thr Asp Val Ser Cys Arg Gln Arg 
    130                 135                 140                 


Ala Asp Val Ala Ile Tyr Gln Asp Val Tyr Ala Val His Ala Pro Thr 
145                 150                 155                 160 


Ser Leu Tyr His Gln Ala Ile Lys Gly Val Arg Val Ala Tyr Trp Ile 
                165                 170                 175     


Gly Phe Asp Thr Thr Pro Phe Met Tyr Asn Ala Met Ala Gly Ala Tyr 
            180                 185                 190         


Pro Ser Tyr Ser Thr Asn Trp Ala Asp Glu Gln Val Leu Lys Ala Lys 
        195                 200                 205             


Asn Ile Gly Leu Cys Ser Thr Asp Leu Thr Glu Gly Arg Arg Gly Lys 
    210                 215                 220                 


Leu Ser Ile Met Arg Gly Lys Lys Met Lys Pro Cys Asp Arg Val Leu 
225                 230                 235                 240 


Phe Ser Val Gly Ser Thr Leu Tyr Pro Glu Ser Arg Lys Leu Leu Lys 
                245                 250                 255     


Ser Trp His Leu Pro Ser Val Phe His Leu Lys Gly Lys Leu Ser Phe 
            260                 265                 270         


Thr Cys Arg Cys Asp Thr Val Val Ser Cys Glu Gly Tyr Val Val Lys 
        275                 280                 285             


Arg Ile Thr Ile Ser Pro Gly Leu Tyr Gly Lys Thr Thr Gly Tyr Ala 
    290                 295                 300                 


Val Thr His His Ala Asp Gly Phe Leu Met Cys Lys Thr Thr Asp Thr 
305                 310                 315                 320 


Val Asp Gly Glu Arg Val Ser Phe Ser Val Cys Thr Tyr Val Pro Ala 
                325                 330                 335     


Thr Ile Cys Asp Gln Met Thr Gly Ile Leu Ala Thr Glu Val Thr Pro 
            340                 345                 350         


Glu Asp Ala Gln Lys Leu Leu Val Gly Leu Asn Gln Arg Ile Val Val 
        355                 360                 365             


Asn Gly Arg Thr Gln Arg Asn Thr Asn Thr Met Lys Asn Tyr Leu Leu 
    370                 375                 380                 


Pro Val Val Ala Gln Ala Leu Ser Lys Trp Ala Lys Glu Cys Arg Lys 
385                 390                 395                 400 


Asp Met Glu Asp Glu Lys Leu Leu Gly Ile Arg Glu Arg Thr Leu Thr 
                405                 410                 415     


Cys Cys Cys Leu Trp Ala Phe Lys Lys Gln Lys Thr His Thr Val Tyr 
            420                 425                 430         


Lys Arg Pro Asp Thr Gln Ser Ile Gln Lys Val Pro Ala Glu Phe Asp 
        435                 440                 445             


Ser Phe Val Val Pro Ser Leu Trp Ser Ser Gly Leu Ser Ile Pro Leu 
    450                 455                 460                 


Arg Thr Arg Ile Lys Trp Leu Leu Ser Lys Val Pro Lys Thr Asp Leu 
465                 470                 475                 480 


Ile Pro Tyr Ser Gly Asp Ala Lys Glu Ala Arg Asp Ala Glu Lys Glu 
                485                 490                 495     


Ala Glu Glu Glu Arg Glu Ala Glu Leu Thr Arg Glu Ala Leu Pro Pro 
            500                 505                 510         


Leu Gln Ala Ala Gln Asp Asp Val Gln Val Glu Ile Asp Val Glu Gln 
        515                 520                 525             


Leu Glu Asp Arg Ala Gly Ala Gly Ile Ile Glu Thr Pro Arg Gly Ala 
    530                 535                 540                 


Ile Lys Val Thr Ala Gln Pro Thr Asp His Val Val Gly Glu Tyr Leu 
545                 550                 555                 560 


Val Leu Ser Pro Gln Thr Val Leu Arg Ser Gln Lys Leu Ser Leu Ile 
                565                 570                 575     


His Ala Leu Ala Glu Gln Val Lys Thr Cys Thr His Ser Gly Arg Ala 
            580                 585                 590         


Gly Arg Tyr Ala Val Glu Ala Tyr Asp Gly Arg Ile Leu Val Pro Ser 
        595                 600                 605             


Gly Tyr Ala Ile Ser Pro Glu Asp Phe Gln Ser Leu Ser Glu Ser Ala 
    610                 615                 620                 


Thr Met Val Tyr Asn Glu Arg Glu Phe Val Asn Arg Lys Leu His His 
625                 630                 635                 640 


Ile Ala Leu His Gly Pro Ala Leu Asn Thr Asp Glu Glu Ser Tyr Glu 
                645                 650                 655     


Leu Val Arg Ala Glu Arg Thr Glu His Glu Tyr Val Tyr Asp Val Asp 
            660                 665                 670         


Gln Arg Arg Cys Cys Lys Lys Glu Glu Ala Ala Gly Leu Val Leu Val 
        675                 680                 685             


Gly Asp Leu Thr Asn Pro Pro Tyr His Glu Phe Ala Tyr Glu Gly Leu 
    690                 695                 700                 


Arg Ile Arg Pro Ala Cys Pro Tyr Lys Thr Ala Val Ile Gly Val Phe 
705                 710                 715                 720 


Gly Val Pro Gly Ser Gly Lys Ser Ala Ile Ile Lys Asn Leu Val Thr 
                725                 730                 735     


Arg Gln Asp Leu Val Thr Ser Gly Lys Lys Glu Asn Cys Gln Glu Ile 
            740                 745                 750         


Ser Thr Asp Val Met Arg Gln Arg Asn Leu Glu Ile Ser Ala Arg Thr 
        755                 760                 765             


Val Asp Ser Leu Leu Leu Asn Gly Cys Asn Arg Pro Val Asp Val Leu 
    770                 775                 780                 


Tyr Val Asp Glu Ala Phe Ala Cys His Ser Gly Thr Leu Leu Ala Leu 
785                 790                 795                 800 


Ile Ala Leu Val Arg Pro Arg Gln Lys Val Val Leu Cys Gly Asp Pro 
                805                 810                 815     


Lys Gln Cys Gly Phe Phe Asn Met Met Gln Met Lys Val Asn Tyr Asn 
            820                 825                 830         


His Asn Ile Cys Thr Gln Val Tyr His Lys Ser Ile Ser Arg Arg Cys 
        835                 840                 845             


Thr Leu Pro Val Thr Ala Ile Val Ser Ser Leu His Tyr Glu Gly Lys 
    850                 855                 860                 


Met Arg Thr Thr Asn Glu Tyr Asn Lys Pro Ile Val Val Asp Thr Thr 
865                 870                 875                 880 


Gly Ser Thr Lys Pro Asp Pro Gly Asp Leu Val Leu Thr Cys Phe Arg 
                885                 890                 895     


Gly Trp Val Lys Gln Leu Gln Ile Asp Tyr Arg Gly His Glu Val Met 
            900                 905                 910         


Thr Ala Ala Ala Ser Gln Gly Leu Thr Arg Lys Gly Val Tyr Ala Val 
        915                 920                 925             


Arg Gln Lys Val Asn Glu Asn Pro Leu Tyr Ala Ser Thr Ser Glu His 
    930                 935                 940                 


Val Asn Val Leu Leu Thr Arg Thr Glu Gly Lys Leu Val Trp Lys Thr 
945                 950                 955                 960 


Leu Ser Gly Asp Pro Trp Ile Lys Thr Leu Gln Asn Pro Pro Lys Gly 
                965                 970                 975     


Asn Phe Lys Ala Thr Ile Lys Glu Trp Glu Val Glu His Ala Ser Ile 
            980                 985                 990         


Met Ala Gly Ile Cys Asn His Gln  Val Thr Phe Asp Thr  Phe Gln Asn 
        995                 1000                 1005             


Lys Ala  Asn Val Cys Trp Ala  Lys Ser Leu Val Pro  Ile Leu Glu 
    1010                 1015                 1020             


Thr Ala  Gly Ile Lys Leu Asn  Asp Arg Gln Trp Ser  Gln Ile Ile 
    1025                 1030                 1035             


Gln Ala  Phe Lys Glu Asp Arg  Ala Tyr Ser Pro Glu  Val Ala Leu 
    1040                 1045                 1050             


Asn Glu  Ile Cys Thr Arg Met  Tyr Gly Val Asp Leu  Asp Ser Gly 
    1055                 1060                 1065             


Leu Phe  Ser Lys Pro Leu Val  Ser Val His His Ala  Asp Asn His 
    1070                 1075                 1080             


Trp Asp  Asn Arg Pro Gly Gly  Lys Met Phe Gly Phe  Asn Pro Glu 
    1085                 1090                 1095             


Ala Ala  Ser Ile Leu Glu Arg  Lys Tyr Pro Phe Thr  Lys Gly Lys 
    1100                 1105                 1110             


Trp Asn  Thr Asn Lys Gln Ile  Cys Val Thr Thr Arg  Arg Ile Glu 
    1115                 1120                 1125             


Asp Phe  Asn Pro Asn Thr Asn  Ile Ile Pro Ala Asn  Arg Arg Leu 
    1130                 1135                 1140             


Pro His  Ser Leu Val Ala Glu  His Arg Pro Val Lys  Gly Glu Arg 
    1145                 1150                 1155             


Met Glu  Trp Leu Val Asn Lys  Ile Asn Gly His His  Val Leu Leu 
    1160                 1165                 1170             


Val Ser  Gly Tyr Asn Leu Val  Leu Pro Thr Lys Arg  Val Thr Trp 
    1175                 1180                 1185             


Val Ala  Pro Leu Gly Ile Arg  Gly Ala Asp Tyr Thr  Tyr Asn Leu 
    1190                 1195                 1200             


Glu Leu  Gly Leu Pro Ala Thr  Leu Gly Arg Tyr Asp  Leu Val Ile 
    1205                 1210                 1215             


Ile Asn  Ile His Thr Pro Phe  Arg Ile His His Tyr  Gln Gln Cys 
    1220                 1225                 1230             


Val Asp  His Ala Met Lys Leu  Gln Met Leu Gly Gly  Asp Ser Leu 
    1235                 1240                 1245             


Arg Leu  Leu Lys Pro Gly Gly  Ser Leu Leu Ile Arg  Ala Tyr Gly 
    1250                 1255                 1260             


Tyr Ala  Asp Arg Thr Ser Glu  Arg Val Val Cys Val  Leu Gly Arg 
    1265                 1270                 1275             


Lys Phe  Arg Ser Ser Arg Ala  Leu Lys Pro Pro Cys  Val Thr Ser 
    1280                 1285                 1290             


Asn Thr  Glu Met Phe Phe Leu  Phe Ser Asn Phe Asp  Asn Gly Arg 
    1295                 1300                 1305             


Arg Asn  Phe Thr Thr His Val  Met Asn Asn Gln Leu  Asn Ala Ala 
    1310                 1315                 1320             


Phe Val  Gly Gln Ala Thr Arg  Ala Gly Cys Ala Pro  Ser Tyr Arg 
    1325                 1330                 1335             


Val Lys  Arg Met Asp Ile Ala  Lys Asn Asp Glu Glu  Cys Val Val 
    1340                 1345                 1350             


Asn Ala  Ala Asn Pro Arg Gly  Leu Pro Gly Asp Gly  Val Cys Lys 
    1355                 1360                 1365             


Ala Val  Tyr Lys Lys Trp Pro  Glu Ser Phe Lys Asn  Ser Ala Thr 
    1370                 1375                 1380             


Pro Val  Gly Thr Ala Lys Thr  Val Met Cys Gly Thr  Tyr Pro Val 
    1385                 1390                 1395             


Ile His  Ala Val Gly Pro Asn  Phe Ser Asn Tyr Ser  Glu Ser Glu 
    1400                 1405                 1410             


Gly Asp  Arg Glu Leu Ala Ala  Ala Tyr Arg Glu Val  Ala Lys Glu 
    1415                 1420                 1425             


Val Thr  Arg Leu Gly Val Asn  Ser Val Ala Ile Pro  Leu Leu Ser 
    1430                 1435                 1440             


Thr Gly  Val Tyr Ser Gly Gly  Lys Asp Arg Leu Thr  Gln Ser Leu 
    1445                 1450                 1455             


Asn His  Leu Phe Thr Ala Leu  Asp Ser Thr Asp Ala  Asp Val Val 
    1460                 1465                 1470             


Ile Tyr  Cys Arg Asp Lys Glu  Trp Glu Lys Lys Ile  Ala Glu Ala 
    1475                 1480                 1485             


Ile Gln  Met Arg Thr Gln Val  Glu Leu Leu Asp Glu  His Ile Ser 
    1490                 1495                 1500             


Val Asp  Cys Asp Ile Ile Arg  Val His Pro Asp Ser  Ser Leu Ala 
    1505                 1510                 1515             


Gly Arg  Lys Gly Tyr Ser Thr  Thr Glu Gly Ser Leu  Tyr Ser Tyr 
    1520                 1525                 1530             


Leu Glu  Gly Thr Arg Phe His  Gln Thr Ala Val Asp  Met Ala Glu 
    1535                 1540                 1545             


Val Tyr  Thr Met Trp Pro Lys  Gln Thr Glu Ala Asn  Glu Gln Val 
    1550                 1555                 1560             


Cys Leu  Tyr Ala Leu Gly Glu  Ser Ile Glu Ser Ile  Arg Gln Lys 
    1565                 1570                 1575             


Cys Pro  Val Asp Asp Ala Asp  Ala Ser Ser Pro Pro  Lys Thr Val 
    1580                 1585                 1590             


Pro Cys  Leu Cys Arg Tyr Ala  Met Thr Pro Glu Arg  Val Thr Arg 
    1595                 1600                 1605             


Leu Arg  Met Asn His Val Thr  Ser Ile Ile Val Cys  Ser Ser Phe 
    1610                 1615                 1620             


Pro Leu  Pro Lys Tyr Lys Ile  Glu Gly Val Gln Lys  Val Lys Cys 
    1625                 1630                 1635             


Ser Lys  Val Met Leu Phe Asp  His Asn Val Pro Ser  Arg Val Ser 
    1640                 1645                 1650             


Pro Arg  Glu Tyr Lys Ser Pro  Gln Glu Thr Ala Gln  Glu Val Ser 
    1655                 1660                 1665             


Ser Thr  Thr Ser Leu Thr His  Ser Gln Phe Asp Leu  Ser Val Asp 
    1670                 1675                 1680             


Gly Glu  Glu Leu Pro Ala Pro  Ser Asp Leu Glu Ala  Asp Ala Pro 
    1685                 1690                 1695             


Ile Pro  Glu Pro Thr Pro Asp  Asp Arg Ala Val Leu  Thr Leu Pro 
    1700                 1705                 1710             


Pro Thr  Ile Asp Asn Phe Ser  Ala Val Ser Asp Trp  Val Met Asn 
    1715                 1720                 1725             


Thr Ala  Pro Val Ala Pro Pro  Arg Arg Arg Arg Gly  Lys Asn Leu 
    1730                 1735                 1740             


Asn Val  Thr Cys Asp Glu Arg  Glu Gly Asn Val Leu  Pro Met Ala 
    1745                 1750                 1755             


Ser Val  Arg Phe Phe Arg Ala  Asp Leu His Ser Ile  Val Gln Glu 
    1760                 1765                 1770             


Thr Ala  Glu Ile Arg Asp Thr  Ala Ala Ser Leu Gln  Ala Pro Leu 
    1775                 1780                 1785             


Ser Val  Ala Thr Glu Pro Asn  Gln Leu Pro Ile Ser  Phe Gly Ala 
    1790                 1795                 1800             


Pro Asn  Glu Thr Phe Pro Ile  Thr Phe Gly Asp Phe  Asp Glu Gly 
    1805                 1810                 1815             


Glu Ile  Glu Ser Leu Ser Ser  Glu Leu Leu Thr Phe  Gly Asp Phe 
    1820                 1825                 1830             


Ser Pro  Gly Glu Val Asp Asp  Leu Thr Asp Ser Asp  Trp Ser Thr 
    1835                 1840                 1845             


Cys Ser  Asp Thr Asp Asp Glu  Leu Xaa Leu Asp Arg  Ala Gly Gly 
    1850                 1855                 1860             


Tyr Ile  Phe Ser Ser Asp Thr  Gly Pro Gly His Leu  Gln Gln Arg 
    1865                 1870                 1875             


Ser Val  Arg Gln Thr Val Leu  Pro Val Asn Thr Leu  Glu Glu Val 
    1880                 1885                 1890             


Gln Glu  Glu Lys Cys Tyr Pro  Pro Lys Leu Asp Glu  Val Lys Glu 
    1895                 1900                 1905             


Gln Leu  Leu Leu Lys Lys Leu  Gln Glu Ser Ala Ser  Met Ala Asn 
    1910                 1915                 1920             


Arg Ser  Arg Tyr Gln Ser Arg  Lys Val Glu Asn Met  Lys Ala Thr 
    1925                 1930                 1935             


Ile Val  Gln Arg Leu Lys Gly  Gly Cys Lys Leu Tyr  Leu Met Ser 
    1940                 1945                 1950             


Glu Thr  Pro Lys Val Pro Thr  Tyr Arg Thr Thr Tyr  Pro Ala Pro 
    1955                 1960                 1965             


Val Tyr  Ser Pro Pro Ile Asn  Ile Arg Leu Ser Asn  Pro Glu Ser 
    1970                 1975                 1980             


Ala Val  Ala Ala Cys Asn Glu  Phe Leu Ala Arg Asn  Tyr Pro Thr 
    1985                 1990                 1995             


Val Ala  Ser Tyr Gln Ile Thr  Asp Glu Tyr Asp Ala  Tyr Leu Asp 
    2000                 2005                 2010             


Met Val  Asp Gly Ser Glu Ser  Cys Leu Asp Arg Ala  Thr Phe Asn 
    2015                 2020                 2025             


Pro Ser  Lys Leu Arg Ser Tyr  Pro Lys Gln His Ser  Tyr His Ala 
    2030                 2035                 2040             


Pro Thr  Ile Arg Ser Ala Val  Pro Ser Pro Phe Gln  Asn Thr Leu 
    2045                 2050                 2055             


Gln Asn  Val Leu Ala Ala Ala  Thr Lys Arg Asn Cys  Asn Val Thr 
    2060                 2065                 2070             


Gln Met  Arg Glu Leu Pro Thr  Leu Asp Ser Ala Val  Phe Asn Val 
    2075                 2080                 2085             


Glu Cys  Phe Lys Lys Phe Ala  Cys Asn Gln Glu Tyr  Trp Lys Glu 
    2090                 2095                 2100             


Phe Ala  Ala Ser Pro Ile Arg  Ile Thr Thr Glu Asn  Leu Thr Thr 
    2105                 2110                 2115             


Tyr Val  Thr Lys Leu Lys Gly  Pro Lys Ala Ala Ala  Leu Phe Ala 
    2120                 2125                 2130             


Lys Thr  His Asn Leu Leu Pro  Leu Gln Glu Val Pro  Met Asp Arg 
    2135                 2140                 2145             


Phe Thr  Val Asp Met Lys Arg  Asp Val Lys Val Thr  Pro Gly Thr 
    2150                 2155                 2160             


Lys His  Thr Glu Glu Arg Pro  Lys Val Gln Val Ile  Gln Ala Ala 
    2165                 2170                 2175             


Glu Pro  Leu Ala Thr Ala Tyr  Leu Cys Gly Ile His  Arg Glu Leu 
    2180                 2185                 2190             


Val Arg  Arg Leu Asn Ala Val  Leu Leu Pro Asn Val  His Thr Leu 
    2195                 2200                 2205             


Phe Asp  Met Ser Ala Glu Asp  Phe Asp Ala Ile Ile  Ala Ala His 
    2210                 2215                 2220             


Phe Lys  Pro Gly Asp Ala Val  Leu Glu Thr Asp Ile  Ala Ser Phe 
    2225                 2230                 2235             


Asp Lys  Ser Gln Asp Asp Ser  Leu Ala Leu Thr Ala  Leu Met Leu 
    2240                 2245                 2250             


Leu Glu  Asp Leu Gly Val Asp  His Pro Leu Leu Asp  Leu Ile Glu 
    2255                 2260                 2265             


Ala Ala  Phe Gly Glu Ile Ser  Ser Cys His Leu Pro  Thr Gly Thr 
    2270                 2275                 2280             


Arg Phe  Lys Phe Gly Ala Met  Met Lys Ser Gly Met  Phe Leu Thr 
    2285                 2290                 2295             


Leu Phe  Val Asn Thr Leu Leu  Asn Ile Thr Ile Ala  Ser Arg Val 
    2300                 2305                 2310             


Leu Glu  Asp Arg Leu Thr Arg  Ser Ala Cys Ala Ala  Phe Ile Gly 
    2315                 2320                 2325             


Asp Asp  Asn Ile Ile His Gly  Val Val Ser Asp Glu  Leu Met Ala 
    2330                 2335                 2340             


Ala Arg  Cys Ala Thr Trp Met  Asn Met Glu Val Lys  Ile Ile Asp 
    2345                 2350                 2355             


Ala Val  Val Ser Gln Lys Ala  Pro Tyr Phe Cys Gly  Gly Phe Ile 
    2360                 2365                 2370             


Leu Tyr  Asp Thr Val Ala Gly  Thr Ala Cys Arg Val  Ala Asp Pro 
    2375                 2380                 2385             


Leu Lys  Arg Leu Phe Lys Leu  Gly Lys Pro Leu Ala  Ala Gly Asp 
    2390                 2395                 2400             


Glu Gln  Asp Asp Asp Arg Arg  Arg Ala Leu Ala Asp  Glu Val Val 
    2405                 2410                 2415             


Arg Trp  Gln Arg Thr Gly Leu  Thr Asp Glu Leu Glu  Lys Ala Val 
    2420                 2425                 2430             


His Ser  Arg Tyr Glu Val Gln  Gly Ile Ser Val Val  Val Met Ser 
    2435                 2440                 2445             


Met Ala  Thr Phe Ala Ser Ser  Arg Ser Asn Phe Glu  Lys Leu Arg 
    2450                 2455                 2460             


Gly Pro  Val Val Thr Leu Tyr  Gly Gly Pro Lys 
    2465                 2470                 


<210>  23
<211>  1248
<212>  PRT
<213>  Chikungunya virus

<400>  23

Met Glu Phe Ile Pro Thr Gln Thr Phe Tyr Asn Arg Arg Tyr Gln Pro 
1               5                   10                  15      


Arg Pro Trp Ala Pro Arg Pro Thr Ile Gln Val Ile Arg Pro Arg Pro 
            20                  25                  30          


Arg Pro Gln Arg Gln Ala Gly Gln Leu Ala Gln Leu Ile Ser Ala Val 
        35                  40                  45              


Asn Lys Leu Thr Met Arg Ala Val Pro Gln Gln Lys Pro Arg Arg Asn 
    50                  55                  60                  


Arg Lys Asn Lys Lys Gln Arg Gln Lys Lys Gln Ala Pro Gln Asn Asp 
65                  70                  75                  80  


Pro Lys Gln Lys Lys Gln Pro Pro Gln Lys Lys Pro Ala Gln Lys Lys 
                85                  90                  95      


Lys Lys Pro Gly Arg Arg Glu Arg Met Cys Met Lys Ile Glu Asn Asp 
            100                 105                 110         


Cys Ile Phe Glu Val Lys His Glu Gly Lys Val Met Gly Tyr Ala Cys 
        115                 120                 125             


Leu Val Gly Asp Lys Val Met Lys Pro Ala His Val Lys Gly Thr Ile 
    130                 135                 140                 


Asp Asn Ala Asp Leu Ala Lys Leu Ala Phe Lys Arg Ser Ser Lys Tyr 
145                 150                 155                 160 


Asp Leu Glu Cys Ala Gln Ile Pro Val His Met Lys Ser Asp Ala Ser 
                165                 170                 175     


Lys Phe Thr His Glu Lys Pro Glu Gly Tyr Tyr Asn Trp His His Gly 
            180                 185                 190         


Ala Val Gln Tyr Ser Gly Gly Arg Phe Thr Ile Pro Thr Gly Ala Gly 
        195                 200                 205             


Lys Pro Gly Asp Ser Gly Arg Pro Ile Phe Asp Asn Lys Gly Arg Val 
    210                 215                 220                 


Val Ala Ile Val Leu Gly Gly Ala Asn Glu Gly Ala Arg Thr Ala Leu 
225                 230                 235                 240 


Ser Val Val Thr Trp Asn Lys Asp Ile Val Thr Lys Ile Thr Pro Glu 
                245                 250                 255     


Gly Ala Glu Glu Trp Ser Leu Ala Leu Pro Val Leu Cys Leu Leu Ala 
            260                 265                 270         


Asn Thr Thr Phe Pro Cys Ser Gln Pro Pro Cys Thr Pro Cys Cys Tyr 
        275                 280                 285             


Glu Lys Glu Pro Glu Ser Thr Leu Arg Met Leu Glu Asp Asn Val Met 
    290                 295                 300                 


Arg Pro Gly Tyr Tyr Gln Leu Leu Lys Ala Ser Leu Thr Cys Ser Pro 
305                 310                 315                 320 


His Arg Gln Arg Arg Ser Thr Lys Asp Asn Phe Asn Val Tyr Lys Ala 
                325                 330                 335     


Thr Arg Pro Tyr Leu Ala His Cys Pro Asp Cys Gly Glu Gly His Ser 
            340                 345                 350         


Cys His Ser Pro Ile Ala Leu Glu Arg Ile Arg Asn Glu Ala Thr Asp 
        355                 360                 365             


Gly Thr Leu Lys Ile Gln Val Ser Leu Gln Ile Gly Ile Lys Thr Asp 
    370                 375                 380                 


Asp Ser His Asp Trp Thr Lys Leu Arg Tyr Met Asp Ser His Thr Pro 
385                 390                 395                 400 


Ala Asp Ala Glu Arg Ala Gly Leu Leu Val Arg Thr Ser Ala Pro Cys 
                405                 410                 415     


Thr Ile Thr Gly Thr Met Gly His Phe Ile Leu Ala Arg Cys Pro Lys 
            420                 425                 430         


Gly Glu Thr Leu Thr Val Gly Phe Thr Asp Ser Arg Lys Ile Ser His 
        435                 440                 445             


Thr Cys Thr His Pro Phe His His Glu Pro Pro Val Ile Gly Arg Glu 
    450                 455                 460                 


Arg Phe His Ser Arg Pro Gln His Gly Lys Glu Leu Pro Cys Ser Thr 
465                 470                 475                 480 


Tyr Val Gln Ser Thr Ala Ala Thr Ala Glu Glu Ile Glu Val His Met 
                485                 490                 495     


Pro Pro Asp Thr Pro Asp Arg Thr Leu Met Thr Gln Gln Ser Gly Asn 
            500                 505                 510         


Val Lys Ile Thr Val Asn Gly Gln Thr Val Arg Tyr Lys Cys Asn Cys 
        515                 520                 525             


Gly Gly Ser Asn Glu Gly Leu Thr Thr Thr Asp Lys Val Ile Asn Asn 
    530                 535                 540                 


Cys Lys Ile Asp Gln Cys His Ala Ala Val Thr Asn His Lys Asn Trp 
545                 550                 555                 560 


Gln Tyr Asn Ser Pro Leu Val Pro Arg Asn Ala Glu Leu Gly Asp Arg 
                565                 570                 575     


Lys Gly Lys Ile His Ile Pro Phe Pro Leu Ala Asn Val Thr Cys Arg 
            580                 585                 590         


Val Pro Lys Ala Arg Asn Pro Thr Val Thr Tyr Gly Lys Asn Gln Val 
        595                 600                 605             


Thr Met Leu Leu Tyr Pro Asp His Pro Thr Leu Leu Ser Tyr Arg Asn 
    610                 615                 620                 


Met Gly Gln Glu Pro Asn Tyr His Glu Glu Trp Val Thr His Lys Lys 
625                 630                 635                 640 


Glu Val Thr Leu Thr Val Pro Thr Glu Gly Leu Glu Val Thr Trp Gly 
                645                 650                 655     


Asn Asn Glu Pro Tyr Lys Tyr Trp Pro Gln Met Ser Thr Asn Gly Thr 
            660                 665                 670         


Ala His Gly His Pro His Glu Ile Ile Leu Tyr Tyr Tyr Glu Leu Tyr 
        675                 680                 685             


Pro Thr Met Thr Val Val Ile Val Ser Val Ala Ser Phe Val Leu Leu 
    690                 695                 700                 


Ser Met Val Gly Thr Ala Val Gly Met Cys Val Cys Ala Arg Arg Arg 
705                 710                 715                 720 


Cys Ile Thr Pro Tyr Glu Leu Thr Pro Gly Ala Thr Val Pro Phe Leu 
                725                 730                 735     


Leu Ser Leu Leu Cys Cys Val Arg Thr Thr Lys Ala Ala Thr Tyr Tyr 
            740                 745                 750         


Glu Ala Ala Ala Tyr Leu Trp Asn Glu Gln Gln Pro Leu Phe Trp Leu 
        755                 760                 765             


Gln Ala Leu Ile Pro Leu Ala Ala Leu Ile Val Leu Cys Asn Cys Leu 
    770                 775                 780                 


Lys Leu Leu Pro Cys Cys Cys Lys Thr Leu Ala Phe Leu Ala Val Met 
785                 790                 795                 800 


Ser Ile Gly Ala His Thr Val Ser Ala Tyr Glu His Val Thr Val Ile 
                805                 810                 815     


Pro Asn Thr Val Gly Val Pro Tyr Lys Thr Leu Val Asn Arg Pro Gly 
            820                 825                 830         


Tyr Ser Pro Met Val Leu Glu Met Glu Leu Gln Ser Val Thr Leu Glu 
        835                 840                 845             


Pro Thr Leu Ser Leu Asp Tyr Ile Thr Cys Glu Tyr Lys Thr Val Ile 
    850                 855                 860                 


Pro Ser Pro Tyr Val Lys Cys Cys Gly Thr Ala Glu Cys Lys Asp Lys 
865                 870                 875                 880 


Ser Leu Pro Asp Tyr Ser Cys Lys Val Phe Thr Gly Val Tyr Pro Phe 
                885                 890                 895     


Met Trp Gly Gly Ala Tyr Cys Phe Cys Asp Ala Glu Asn Thr Gln Leu 
            900                 905                 910         


Ser Glu Ala His Val Glu Lys Ser Glu Ser Cys Lys Thr Glu Phe Ala 
        915                 920                 925             


Ser Ala Tyr Arg Ala His Thr Ala Ser Ala Ser Ala Lys Leu Arg Val 
    930                 935                 940                 


Leu Tyr Gln Gly Asn Asn Ile Thr Val Ala Ala Tyr Ala Asn Gly Asp 
945                 950                 955                 960 


His Ala Val Thr Val Lys Asp Ala Lys Phe Val Val Gly Pro Met Ser 
                965                 970                 975     


Ser Ala Trp Thr Pro Phe Asp Asn Lys Ile Val Val Tyr Lys Gly Asp 
            980                 985                 990         


Val Tyr Asn Met Asp Tyr Pro Pro  Phe Gly Ala Gly Arg  Pro Gly Gln 
        995                 1000                 1005             


Phe Gly  Asp Ile Gln Ser Arg  Thr Pro Glu Ser Lys  Asp Val Tyr 
    1010                 1015                 1020             


Ala Asn  Thr Gln Leu Val Leu  Gln Arg Pro Ala Ala  Gly Thr Val 
    1025                 1030                 1035             


His Val  Pro Tyr Ser Gln Ala  Pro Ser Gly Phe Lys  Tyr Trp Leu 
    1040                 1045                 1050             


Lys Glu  Arg Gly Ala Ser Leu  Gln His Thr Ala Pro  Phe Gly Cys 
    1055                 1060                 1065             


Gln Ile  Ala Thr Asn Pro Val  Arg Ala Val Asn Cys  Ala Val Gly 
    1070                 1075                 1080             


Asn Ile  Pro Ile Ser Ile Asp  Ile Pro Asp Ala Ala  Phe Thr Arg 
    1085                 1090                 1095             


Val Val  Asp Ala Pro Ser Val  Thr Asp Met Ser Cys  Glu Val Pro 
    1100                 1105                 1110             


Ala Cys  Thr His Ser Ser Asp  Phe Gly Gly Val Ala  Ile Ile Lys 
    1115                 1120                 1125             


Tyr Thr  Ala Ser Lys Lys Gly  Lys Cys Ala Val His  Ser Met Thr 
    1130                 1135                 1140             


Asn Ala  Val Thr Ile Arg Glu  Ala Asp Val Glu Val  Glu Gly Asn 
    1145                 1150                 1155             


Ser Gln  Leu Gln Ile Ser Phe  Ser Thr Ala Leu Ala  Ser Ala Glu 
    1160                 1165                 1170             


Phe Arg  Val Gln Val Cys Ser  Thr Gln Val His Cys  Ala Ala Ala 
    1175                 1180                 1185             


Cys His  Pro Pro Lys Asp His  Ile Val Asn Tyr Pro  Ala Ser His 
    1190                 1195                 1200             


Thr Thr  Leu Gly Val Gln Asp  Ile Ser Thr Thr Ala  Met Ser Trp 
    1205                 1210                 1215             


Val Gln  Lys Ile Thr Gly Gly  Val Gly Leu Ile Val  Ala Val Ala 
    1220                 1225                 1230             


Ala Leu  Ile Leu Ile Val Val  Leu Cys Val Ser Phe  Ser Arg His 
    1235                 1240                 1245             


<210>  24
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetis primer

<400>  24
cagtgatccc gaacacggtg                                                   20


<210>  25
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic primer

<400>  25
ccacataaat gggtagactc c                                                 21


