                         SEQUENCE LISTING

<110>  National Centre for Biological Sciences (NCBS-TIFR)
 
<120>  NUCLEOTIDE SEQUENCES, NUCLEIC ACID SENSORS AND METHODS THEREOF

<130>  IP23185

<140>  3973/CHE/2013
<141>  2013-09-04

<160>  64    

<170>  PatentIn version 3.5

<210>  1
<211>  79
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  nucleotide sequence


<220>
<221>  misc_feature
<222>  (1)..(79)
<223>  n is base selected from group comprising A, G, U, C and modified 
       base  or any combinations thereof and number of bases vary from 
       about 4 to about 9 bases

<400>  1
nuuguugagu agagugugag cuccguaacu agucgcgucu ucggacgcga cugaaugaaa       60

uggugaagga cggguccan                                                    79


<210>  2
<211>  110
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  nucleic acid sensor


<220>
<221>  misc_feature
<222>  (1)..(110)
<223>  n is base selected from group comprising A, G, U, C and modified 
       base or any combinations thereof and number of bases vary from 
       about 4 to about 9 bases

<400>  2
ggaagagaug gcgacuaaaa cgacuugucg cnuuguugag uagaguguga gcuccguaac       60

uagucgcguc uucggacgcg acugaaugaa auggugaagg acggguccan                 110


<210>  3
<211>  91
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  aSp6


<220>
<221>  misc_feature
<222>  (1)..(91)

<400>  3
cggcagcuug uugaguagag ugugagcucc guaacuaguc gcgucuucgg acgcgacuga       60

augaaauggu gaaggacggg uccagcugcu u                                      91


<210>  4
<211>  95
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  aSp9


<220>
<221>  misc_feature
<222>  (1)..(95)

<400>  4
ggcaggcacu uguugaguag agugugagcu ccguaacuag ucgcgucuuc ggacgcgacu       60

gaaugaaaug gugaaggacg gguccagugu cugcu                                  95


<210>  5
<211>  85
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  aSp4


<220>
<221>  misc_feature
<222>  (1)..(85)

<400>  5
cagcuuguug aguagagugu gagcuccgua acuagucgcg ucuucggacg cgacugaaug       60

aaauggugaa ggacgggucc agcug                                             85


<210>  6
<211>  91
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  aSp7m


<220>
<221>  misc_feature
<222>  (1)..(91)

<400>  6
caggcacuug uugaguagag ugugagcucc guaacuaguc gcgucuucgg acgcgacuga       60

augaaauggu gaaggacggg uccagugacu g                                      91


<210>  7
<211>  87
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  aSp5b


<220>
<221>  misc_feature
<222>  (1)..(87)

<400>  7
cagcuuuguu gaguagagug ugagcuccgu aacuagucgc gucuucggac gcgacugaau       60

gaaaugguga aggacggguc caagcug                                           87


<210>  8
<211>  89
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  aSp6b


<220>
<221>  misc_feature
<222>  (1)..(89)

<400>  8
cagcucuugu ugaguagagu gugagcuccg uaacuagucg cgucuucgga cgcgacugaa       60

ugaaauggug aaggacgggu ccagagcug                                         89


<210>  9
<211>  116
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp4


<220>
<221>  misc_feature
<222>  (1)..(116)

<400>  9
ggaagagaug gcgacuaaaa cgacuugucg ccagcuuguu gaguagagug ugagcuccgu       60

aacuagucgc gucuucggac gcgacugaau gaaaugguga aggacggguc cagcug          116


<210>  10
<211>  118
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp5a


<220>
<221>  misc_feature
<222>  (1)..(118)

<400>  10
ggaagagaug gcgacuaaaa cgacuugucg cgcagcuugu ugaguagagu gugagcuccg       60

uaacuagucg cgucuucgga cgcgacugaa ugaaauggug aaggacgggu ccagcugc        118


<210>  11
<211>  122
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp6a


<220>
<221>  misc_feature
<222>  (1)..(122)

<400>  11
ggaagagaug gcgacuaaaa cgacuugucg ccggcagcuu guugaguaga gugugagcuc       60

cguaacuagu cgcgucuucg gacgcgacug aaugaaaugg ugaaggacgg guccagcugc      120

uu                                                                     122


<210>  12
<211>  122
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp7


<220>
<221>  misc_feature
<222>  (1)..(122)

<400>  12
ggaagagaug gcgacuaaaa cgacuugucg ccaggcacuu guugaguaga gugugagcuc       60

cguaacuagu cgcgucuucg gacgcgacug aaugaaaugg ugaaggacgg guccaguguc      120

ug                                                                     122


<210>  13
<211>  126
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp9m'


<220>
<221>  misc_feature
<222>  (1)..(126)

<400>  13
ggaagagaug gcgacuaaaa cgacuugucg cggcaggcac uuguugagua gagugugagc       60

uccguaacua gucgcgucuu cggacgcgac ugaaugaaau ggugaaggac ggguccagug      120

ugugcu                                                                 126


<210>  14
<211>  126
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp9m''


<220>
<221>  misc_feature
<222>  (1)..(126)

<400>  14
ggaagagaug gcgacuaaaa cgacuugucg cggcaggcac uuguugagua gagugugagc       60

uccguaacua gucgcgucuu cggacgcgac ugaaugaaau ggugaaggac ggguccagug      120

ucggcu                                                                 126


<210>  15
<211>  122
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp7m


<220>
<221>  misc_feature
<222>  (1)..(122)

<400>  15
ggaagagaug gcgacuaaaa cgacuugucg ccaggcacuu guugaguaga gugugagcuc       60

cguaacuagu cgcgucuucg gacgcgacug aaugaaaugg ugaaggacgg guccagugac      120

ug                                                                     122


<210>  16
<211>  118
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp5b


<220>
<221>  misc_feature
<222>  (1)..(118)

<400>  16
ggaagagaug gcgacuaaaa cgacuugucg ccagcuuugu ugaguagagu gugagcuccg       60

uaacuagucg cgucuucgga cgcgacugaa ugaaauggug aaggacgggu ccaagcug        118


<210>  17
<211>  154
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp4A


<220>
<221>  misc_feature
<222>  (1)..(154)

<400>  17
ggaagagaug gcgacuaaaa cgacuugucg ccagcuuguu gaguagagug ugagcuccgu       60

aacuagucgc gucuucggac gcgacugaau gaaaugguga aggacggguc cagcugauca      120

acacugcaca ccagacagca agauccuaua uaua                                  154


<210>  18
<211>  160
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp7mA


<220>
<221>  misc_feature
<222>  (1)..(160)

<400>  18
ggaagagaug gcgacuaaaa cgacuugucg ccaggcacuu guugaguaga gugugagcuc       60

cguaacuagu cgcgucuucg gacgcgacug aaugaaaugg ugaaggacgg guccagugac      120

ugaucaacac ugcacaccag acagcaagau ccuauauaua                            160


<210>  19
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  D2 Alexa 647


<220>
<221>  misc_feature
<222>  (1)..(38)

<400>  19
tatatatagg atcttgctgt ctggtgtgca gtgttgat                               38


<210>  20
<211>  95
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp4SplitA


<220>
<221>  misc_feature
<222>  (1)..(95)

<400>  20
ggaagagaug gcgacuaaaa cgacuugucg ccagcuuguu gaguagagug ugagcuccgu       60

aacuagucgc guccggcgua ccguaccgua cccug                                  95


<210>  21
<211>  99
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp4SplitB


<220>
<221>  misc_feature
<222>  (1)..(99)

<400>  21
aucaacacug cacaccagac agcaagaucc uauauauaca ggguacggua cgguacgccg       60

gacgcgacug aaugaaaugg ugaaggacgg guccagcug                              99


<210>  22
<211>  120
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp6b


<220>
<221>  misc_feature
<222>  (1)..(120)

<400>  22
ggaagagaug gcgacuaaaa cgacuugucg ccagcucuug uugaguagag ugugagcucc       60

guaacuaguc gcgucuucgg acgcgacuga augaaauggu gaaggacggg uccagagcug      120


<210>  23
<211>  31
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  cAMP aptamer


<220>
<221>  misc_feature
<222>  (1)..(31)

<400>  23
ggaagagaug gcgacuaaaa cgacuugucg c                                      31


<210>  24
<211>  87
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  Spinach


<220>
<221>  misc_feature
<222>  (1)..(87)

<400>  24
gacgcgacug aaugaaaugg ugaaggacgg guccagcugc uucggcagcu uguugaguag       60

agugugagcu ccguaacuag ucgcguc                                           87


<210>  25
<211>  76
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  caSp4DNA-1


<220>
<221>  misc_feature
<222>  (1)..(76)

<400>  25
taatacgact cactatagga agagatggcg actaaaacga cttgtcgcca gcttgttgag       60

tagagtgtga gctccg                                                       76


<210>  26
<211>  76
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  caSp4DNA-2


<220>
<221>  misc_feature
<222>  (1)..(76)

<400>  26
cagctggacc cgtccttcac catttcattc agtcgcgtcc gaagacgcga ctagttacgg       60

agctcacact ctactc                                                       76


<210>  27
<211>  73
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  caSp4SplitBDNA1


<220>
<221>  misc_feature
<222>  (1)..(73)

<400>  27
taatacgact cactataggg atcaacactg cacaccagac agcaagatcc tatatataca       60

gggtacggta cgg                                                          73


<210>  28
<211>  74
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  caSp4SplitBDNA2


<220>
<221>  misc_feature
<222>  (1)..(74)

<400>  28
cagctggacc cgtccttcac catttcattc agtcgcgtcc ggcgtaccgt accgtaccct       60

gtatatatag gatc                                                         74


<210>  29
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp4


<220>
<221>  misc_feature
<222>  (1)..(25)

<400>  29
taatacgact cactatagga agaga                                             25


<210>  30
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp4


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  30
cagctggacc cgtccttcac catttcattc                                        30


<210>  31
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPIVTcaSpn


<220>
<221>  misc_feature
<222>  (1)..(35)

<400>  31
attcgccctt taatacgact cactatagga agaga                                  35


<210>  32
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp5aPartA


<220>
<221>  misc_feature
<222>  (1)..(28)

<400>  32
tctactcaac aagctgcgcg acaagtcg                                          28


<210>  33
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp5aPartB


<220>
<221>  misc_feature
<222>  (1)..(27)

<400>  33
cgacttgtcg cgcagcttgt tgagtag                                           27


<210>  34
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp5a


<220>
<221>  misc_feature
<222>  (1)..(27)

<400>  34
gcagctggac ccgtccttca ccatttc                                           27


<210>  35
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp5bPartA


<220>
<221>  misc_feature
<222>  (1)..(27)

<400>  35
ctactcaaca aagctggcga caagtcg                                           27


<210>  36
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp5bPartB


<220>
<221>  misc_feature
<222>  (1)..(27)

<400>  36
cgacttgtcg ccagctttgt tgagtag                                           27


<210>  37
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp5b


<220>
<221>  misc_feature
<222>  (1)..(27)

<400>  37
cagcttggac ccgtccttca ccatttc                                           27


<210>  38
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp6aPartA


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  38
tctactcaac aagctgccgg cgacaagtcg                                        30


<210>  39
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp6aPartB


<220>
<221>  misc_feature
<222>  (1)..(29)

<400>  39
cgacttgtcg ccggcagctt gttgagtag                                         29


<210>  40
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp6a


<220>
<221>  misc_feature
<222>  (1)..(29)

<400>  40
aagcagctgg acccgtcctt caccatttc                                         29


<210>  41
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp6bPart A


<220>
<221>  misc_feature
<222>  (1)..(28)

<400>  41
ctactcaaca agagctggcg acaagtcg                                          28


<210>  42
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp6bPartB


<220>
<221>  misc_feature
<222>  (1)..(28)

<400>  42
cgacttgtcg ccagctcttg ttgagtag                                          28


<210>  43
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp6b


<220>
<221>  misc_feature
<222>  (1)..(28)

<400>  43
cagctctgga cccgtccttc accatttc                                          28


<210>  44
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp7PartA


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  44
tctactcaac aagtgcctgg cgacaagtcg                                        30


<210>  45
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp7PartB


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  45
acgacttgtc gccaggcact tgttgagtag                                        30


<210>  46
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp7


<220>
<221>  misc_feature
<222>  (1)..(29)

<400>  46
cagacactgg acccgtcctt caccatttc                                         29


<210>  47
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp7m


<220>
<221>  misc_feature
<222>  (1)..(28)

<400>  47
cagtcactgg acccgtcctt cacctttc                                          28


<210>  48
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp9PartA


<220>
<221>  misc_feature
<222>  (1)..(33)

<400>  48
ctctactcaa caagtgcctg ccgcgacaag tcg                                    33


<210>  49
<211>  35
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp9PartB


<220>
<221>  misc_feature
<222>  (1)..(35)

<400>  49
aacgacttgt cgcggcaggc acttgttgag tagag                                  35


<210>  50
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp9


<220>
<221>  misc_feature
<222>  (1)..(26)

<400>  50
agcagacact ggacccgtcc ttcacc                                            26


<210>  51
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp9m


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  51
agcacacact ggacccgtcc ttcacctttc                                        30


<210>  52
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp9m'


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  52
agcacacact ggacccgtcc ttcacctttc                                        30


<210>  53
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp9m''


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  53
agccgacact ggacccgtcc ttcacctttc                                        30


<210>  54
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp4SplitB


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  54
taatacgact cactataggg atcaacactg                                        30


<210>  55
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp4SplitB


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  55
attcgccctt taatacgact cactataggg                                        30


<210>  56
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp4SplitA


<220>
<221>  misc_feature
<222>  (1)..(39)

<400>  56
cagggtacgg tacggtacgc cggacgcgac tagttacgg                              39


<210>  57
<211>  59
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp4A


<220>
<221>  misc_feature
<222>  (1)..(59)

<400>  57
tatatatagg atcttgctgt ctggtgtgca gtgttgatca gctggacccg tccttcacc        59


<210>  58
<211>  61
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp7mA


<220>
<221>  misc_feature
<222>  (1)..(61)

<400>  58
tatatatagg atcttgctgt ctggtgtgca gtgttgatag tcactggacc cgtccttcac       60

c                                                                       61


<210>  59
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp7nePartA


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  59
tctactcaac aagtccctgg cgacaagtcg                                        30


<210>  60
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  FPcaSp7nePartB


<220>
<221>  misc_feature
<222>  (1)..(30)

<400>  60
acgacttgtc gccagggact tgttgagtag                                        30


<210>  61
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  RPcaSp7ne


<220>
<221>  misc_feature
<222>  (1)..(29)

<400>  61
aagagactgg acccgtcctt caccatttc                                         29


<210>  62
<211>  122
<212>  RNA
<213>  Artificial Sequence

<220>
<223>  caSp7NE


<220>
<221>  misc_feature
<222>  (1)..(122)

<400>  62
ggaagagaug gcgacuaaaa cgacuugucg ccagggacuu guugaguaga gugugagcuc       60

cguaacuagu cgcgucuucg gacgcgacug aaugaaaugg ugaaggacgg guccagucuc      120

uu                                                                     122


<210>  63
<211>  143
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Duplex IVT DNA positive strand


<220>
<221>  misc_feature
<222>  (1)..(143)

<400>  63
attcgccctt taatacgact cactatagga agagatggcg actaaaacga cttgtcgcca       60

gcttgttgag tagagtgtga gctccgtaac tagtcgcgtc ttcggacgcg actgaatgaa      120

atggtgaagg acgggtccag ctg                                              143


<210>  64
<211>  143
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Duplex IVT DNA negative strand


<220>
<221>  misc_feature
<222>  (1)..(143)

<400>  64
taagcgggaa attatgctga gtgatatcct tctctaccgc tgattttgct gaacagcggt       60

cgaacaactc atctcacact cgaggcattg atcagcgcag aagcctgcgc tgacttactt      120

taccacttcc tgcccaggtc gac                                              143


