SEQUENCE LISTING


<110> CELLECTIS
 
<120> METHODS FOR DETECTING NUCLEIC ACID SEQUENCES OF INTEREST USING DNA-BINDING PROTEIN DETECTOR

<130> P81313265PCT00 

<160>24   

<170>  PatentIn version 3.5



<210>  1

<211>  1026
<212>  PRT
<213>  artificial sequence

<220>
<223>  RAGT2.4_TC_N152_C11_RenilaLuc (from pCLS 24992)

<400>  1
Met Ser Pro Arg His His His His His His Ala Tyr Gly Glu Asn Leu 
1               5                   10                  15      


Tyr Phe Gln Gly Ala Met Ala Asp Leu Arg Thr Leu Gly Tyr Ser Gln 
            20                  25                  30          


Gln Gln Gln Glu Lys Ile Lys Pro Lys Val Arg Ser Thr Val Ala Gln 
        35                  40                  45              


His His Glu Ala Leu Val Gly His Gly Phe Thr His Ala His Ile Val 
    50                  55                  60                  


Ala Leu Ser Gln His Pro Ala Ala Leu Gly Thr Val Ala Val Lys Tyr 
65                  70                  75                  80  


Gln Asp Met Ile Ala Ala Leu Pro Glu Ala Thr His Glu Ala Ile Val 
                85                  90                  95      


Gly Val Gly Lys Gln Trp Ser Gly Ala Arg Ala Leu Glu Ala Leu Leu 
            100                 105                 110         


Thr Val Ala Gly Glu Leu Arg Gly Pro Pro Leu Gln Leu Asp Thr Gly 
        115                 120                 125             


Gln Leu Leu Lys Ile Ala Lys Arg Gly Gly Val Thr Ala Val Glu Ala 
    130                 135                 140                 


Val His Ala Trp Arg Asn Ala Leu Thr Gly Ala Pro Leu Asn Leu Thr 
145                 150                 155                 160 


Pro Gln Gln Val Val Ala Ile Ala Ser Asn Asn Gly Gly Lys Gln Ala 
                165                 170                 175     


Leu Glu Thr Val Gln Arg Leu Leu Pro Val Leu Cys Gln Ala His Gly 
            180                 185                 190         


Leu Thr Pro Gln Gln Val Val Ala Ile Ala Ser Asn Gly Gly Gly Lys 
        195                 200                 205             


Gln Ala Leu Glu Thr Val Gln Arg Leu Leu Pro Val Leu Cys Gln Ala 
    210                 215                 220                 


His Gly Leu Thr Pro Gln Gln Val Val Ala Ile Ala Ser Asn Gly Gly 
225                 230                 235                 240 


Gly Lys Gln Ala Leu Glu Thr Val Gln Arg Leu Leu Pro Val Leu Cys 
                245                 250                 255     


Gln Ala His Gly Leu Thr Pro Gln Gln Val Val Ala Ile Ala Ser Asn 
            260                 265                 270         


Gly Gly Gly Lys Gln Ala Leu Glu Thr Val Gln Arg Leu Leu Pro Val 
        275                 280                 285             


Leu Cys Gln Ala His Gly Leu Thr Pro Glu Gln Val Val Ala Ile Ala 
    290                 295                 300                 


Ser Asn Ile Gly Gly Lys Gln Ala Leu Glu Thr Val Gln Ala Leu Leu 
305                 310                 315                 320 


Pro Val Leu Cys Gln Ala His Gly Leu Thr Pro Gln Gln Val Val Ala 
                325                 330                 335     


Ile Ala Ser Asn Gly Gly Gly Lys Gln Ala Leu Glu Thr Val Gln Arg 
            340                 345                 350         


Leu Leu Pro Val Leu Cys Gln Ala His Gly Leu Thr Pro Gln Gln Val 
        355                 360                 365             


Val Ala Ile Ala Ser Asn Asn Gly Gly Lys Gln Ala Leu Glu Thr Val 
    370                 375                 380                 


Gln Arg Leu Leu Pro Val Leu Cys Gln Ala His Gly Leu Thr Pro Gln 
385                 390                 395                 400 


Gln Val Val Ala Ile Ala Ser Asn Asn Gly Gly Lys Gln Ala Leu Glu 
                405                 410                 415     


Thr Val Gln Arg Leu Leu Pro Val Leu Cys Gln Ala His Gly Leu Thr 
            420                 425                 430         


Pro Gln Gln Val Val Ala Ile Ala Ser Asn Gly Gly Gly Lys Gln Ala 
        435                 440                 445             


Leu Glu Thr Val Gln Arg Leu Leu Pro Val Leu Cys Gln Ala His Gly 
    450                 455                 460                 


Leu Thr Pro Gln Gln Val Val Ala Ile Ala Ser Asn Gly Gly Gly Lys 
465                 470                 475                 480 


Gln Ala Leu Glu Thr Val Gln Arg Leu Leu Pro Val Leu Cys Gln Ala 
                485                 490                 495     


His Gly Leu Thr Pro Glu Gln Val Val Ala Ile Ala Ser Asn Ile Gly 
            500                 505                 510         


Gly Lys Gln Ala Leu Glu Thr Val Gln Ala Leu Leu Pro Val Leu Cys 
        515                 520                 525             


Gln Ala His Gly Leu Thr Pro Glu Gln Val Val Ala Ile Ala Ser His 
    530                 535                 540                 


Asp Gly Gly Lys Gln Ala Leu Glu Thr Val Gln Arg Leu Leu Pro Val 
545                 550                 555                 560 


Leu Cys Gln Ala His Gly Leu Thr Pro Gln Gln Val Val Ala Ile Ala 
                565                 570                 575     


Ser Asn Gly Gly Gly Lys Gln Ala Leu Glu Thr Val Gln Arg Leu Leu 
            580                 585                 590         


Pro Val Leu Cys Gln Ala His Gly Leu Thr Pro Gln Gln Val Val Ala 
        595                 600                 605             


Ile Ala Ser Asn Gly Gly Gly Lys Gln Ala Leu Glu Thr Val Gln Arg 
    610                 615                 620                 


Leu Leu Pro Val Leu Cys Gln Ala His Gly Leu Thr Pro Glu Gln Val 
625                 630                 635                 640 


Val Ala Ile Ala Ser Asn Ile Gly Gly Lys Gln Ala Leu Glu Thr Val 
                645                 650                 655     


Gln Ala Leu Leu Pro Val Leu Cys Gln Ala His Gly Leu Thr Pro Gln 
            660                 665                 670         


Gln Val Val Ala Ile Ala Ser Asn Gly Gly Gly Arg Pro Ala Leu Glu 
        675                 680                 685             


Ile Arg Ser Arg Ala Ser Arg Ser Ile Val Ala Gln Leu Ser Arg Pro 
    690                 695                 700                 


Asp Pro Ser Gly Ser Gly Ser Gly Gly Asp Pro Met Thr Ser Lys Val 
705                 710                 715                 720 


Tyr Asp Pro Glu Gln Arg Lys Arg Met Ile Thr Gly Pro Gln Trp Trp 
                725                 730                 735     


Ala Arg Cys Lys Gln Met Asn Val Leu Asp Ser Phe Ile Asn Tyr Tyr 
            740                 745                 750         


Asp Ser Glu Lys His Ala Glu Asn Ala Val Ile Phe Leu His Gly Asn 
        755                 760                 765             


Ala Ala Ser Ser Tyr Leu Trp Arg His Val Val Pro His Ile Glu Pro 
    770                 775                 780                 


Val Ala Arg Cys Ile Ile Pro Asp Leu Ile Gly Met Gly Lys Ser Gly 
785                 790                 795                 800 


Lys Ser Gly Asn Gly Ser Tyr Arg Leu Leu Asp His Tyr Lys Tyr Leu 
                805                 810                 815     


Thr Ala Trp Phe Glu Leu Leu Asn Leu Pro Lys Lys Ile Ile Phe Val 
            820                 825                 830         


Gly His Asp Trp Gly Ala Cys Leu Ala Phe His Tyr Ser Tyr Glu His 
        835                 840                 845             


Gln Asp Lys Ile Lys Ala Ile Val His Ala Glu Ser Val Val Asp Val 
    850                 855                 860                 


Ile Glu Ser Trp Asp Glu Trp Pro Asp Ile Glu Glu Asp Ile Ala Leu 
865                 870                 875                 880 


Ile Lys Ser Glu Glu Gly Glu Lys Met Val Leu Glu Asn Asn Phe Phe 
                885                 890                 895     


Val Glu Thr Met Leu Pro Ser Lys Ile Met Arg Lys Leu Glu Pro Glu 
            900                 905                 910         


Glu Phe Ala Ala Tyr Leu Glu Pro Phe Lys Glu Lys Gly Glu Val Arg 
        915                 920                 925             


Arg Pro Thr Leu Ser Trp Pro Arg Glu Ile Pro Leu Val Lys Gly Gly 
    930                 935                 940                 


Lys Pro Asp Val Val Gln Ile Val Arg Asn Tyr Asn Ala Tyr Leu Arg 
945                 950                 955                 960 


Ala Ser Asp Asp Leu Pro Lys Met Phe Ile Glu Ser Asp Pro Gly Phe 
                965                 970                 975     


Phe Ser Asn Ala Ile Val Glu Gly Ala Lys Lys Phe Pro Asn Thr Glu 
            980                 985                 990         


Phe Val Lys Val Lys Gly Leu His Phe Ser Gln Glu Asp Ala Pro Asp 
        995                 1000                1005            


Glu Met Gly Lys Tyr Ile Lys Ser Phe Val Glu Arg Val Leu Lys Asn 
    1010                1015                1020                


Glu Gln 
1025    



<210>  2

<211>  119
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Forward

<400>  2
gtacaaaaaa gcagtcgact agggataaca gggtaattat ataaacctaa ccctcttagc     60
atgaaggtac cataagtaac cataaacaat gcatttactt ataatacagt ttagctttc     119


<210>  3

<211>  119
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Reverse

<400>  3
gaaagctaaa ctgtattata agtaaatgca ttgtttatgg ttacttatgg taccttcatg     60
ctaagagggt taggtttata taattaccct gttatcccta gtcgactgct tttttgtac     119


<210>  4

<211>  91
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_FOR_5Biot

<400>  4
gtacaaaaaa gcagtcgact agggataaca gggtaattat ataaacctaa ccctcttagc     60
atgaaggtac cataagtaac cataaacaat g                                    91


<210>  5

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV1

<400>  5
cattgtttat ggttacttat gg                                              22


<210>  6

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV2

<400>  6
catggtttat ggttacttat gg                                              22


<210>  7

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV3

<400>  7
catggcttat ggttacttat gg                                              22


<210>  8

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV4

<400>  8
catggctttt ggttacttat gg                                              22


<210>  9

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV5

<400>  9
catggctttt gcttacttat gg                                              22


<210>  10

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV6

<400>  10
gctggcactt gcttgctaca gc                                              22


<210>  11

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV7

<400>  11
cattgtttat ggttacttac gg                                              22


<210>  12

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV8

<400>  12
cattgtttat ggttacctat gg                                              22


<210>  13

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV9

<400>  13
cattgtttat ggctacttat gg                                              22


<210>  14

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV10

<400>  14
cattgtttac ggttacttat gg                                              22


<210>  15

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV11

<400>  15
cattgtctat ggttacttat gg                                              22


<210>  16

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV12

<400>  16
catcgtttat ggttacttat gg                                              22


<210>  17

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV13

<400>  17
cattgtttat ggctacctac gg                                              22


<210>  18

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV14

<400>  18
catcgtctac ggttacttat gg                                              22


<210>  19

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV15

<400>  19
catcgtctat ggttacttat gg                                              22


<210>  20

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_REV16

<400>  20
cattgtttat ggttacctac gg                                              22


<210>  21

<211>  91
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_REV_3Biot

<400>  21
cattgtttat ggttacttat ggtaccttca tgctaagagg gttaggttta tataattacc     60
ctgttatccc tagtcgactg cttttttgta c                                    91


<210>  22

<211>  22
<212>  DNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_For1

<400>  22
ccataagtaa ccataaacaa tg                                              22


<210>  23

<211>  22
<212>  RNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_RNA_For1

<400>  23
ccauaaguaa ccauaaacaa ug                                              22


<210>  24

<211>  22
<212>  RNA
<213>  artificial sequence

<220>
<223>  Avr15RAGT2R_Pray_RNA_REV6

<400>  24
gcuggcacuu gcuugcuaca gc                                              22






