                         SEQUENCE LISTING

<110>  The University of North Carolina at Chapel Hill
       Week, Kevin M
       Siegfried, Nathan
       Homan, Philip
       Busan, Steven
       Favorov, Oleg
 
<120>  DETECTION OF CHEMICAL MODIFICATIONS IN RNA

<130>  421/338 PCT

<150>  US 61/887,614
<151>  2013-10-07

<160>  12    

<170>  PatentIn version 3.5

<210>  1
<211>  120
<212>  RNA
<213>  Escherichia coli

<400>  1
ugccuggcgg ccguagcgcg guggucccac cugaccccau gccgaacuca gaagugaaac       60

gccguagcgc cgaugguagu guggggucuc cccaugcgag aguagggaac ugccaggcau      120


<210>  2
<211>  158
<212>  RNA
<213>  Fusobacterium nucleatum

<400>  2
gauaugagga gagauuucau uuuaaugaaa caccgaagaa guaaaucuuu cagguaaaaa       60

ggacucauau uggacgaacc ucuggagagc uuaucuaaga gauaacaccg aaggagcaaa      120

gcuaauuuua gccuaaacuc ucagguaaaa ggacggag                              158


<210>  3
<211>  154
<212>  RNA
<213>  Bacillus subtilis

<400>  3
cuucguuagg ugaggcuccu guauggagau acgcugcugc ccaaaaaugu ccaaagacgc       60

caauggguca acagaaauca ucgacauaag gugauuuuua augcagcugg augcuugucc      120

uaugccauac agugcuaaag cucuacgauu gaag                                  154


<210>  4
<211>  425
<212>  RNA
<213>  Tetrahymena thermophila

<400>  4
cucucuaaau agcaauauuu accuuuggag ggaaaaguua ucaggcaugc accugguagc       60

uagucuuuaa accaauagau ugcaucgguu uaaaaggcaa gaccgucaaa uugcgggaaa      120

ggggucaaca gccguucagu accaagucuc aggggaaacu uugagauggc cuugcaaagg      180

guaugguaau aagcugacgg acaugguccu aaccacgcag ccaaguccua agucaacaga      240

ucuucuguug auauggaugc aguuccagac uaaaugucgg ucggggaaga uguauucuuc      300

ucauaagaua uagucggacc ucuccuuaau gggagcuagc ggaugaagug augcaacacu      360

ggagccgcug ggaacuaauu uguaugcgaa aguauauuga uuaguuuugg aguacucgua      420

aggua                                                                  425


<210>  5
<211>  80
<212>  DNA
<213>  Escherichia coli

<400>  5
ggactcgggg tgcccttctg cgtgaaggct gagaaatacc cgtatcacct gatctggata       60

atgccagcgt agggaagttc                                                   80


<210>  6
<211>  158
<212>  DNA
<213>  Tetrahymena thermophila

<400>  6
gaattgcggg aaaggggtca acagccgttc agtaccaagt ctcaggggaa actttgagat       60

ggccttgcaa agggtatggt aataagctga cggacatggt cctaaccacg cagccaagtc      120

ctaagtcaac agatcttctg ttgatatgga tgcagttc                              158


<210>  7
<211>  268
<212>  DNA
<213>  Bacillus stearothermophilus

<400>  7
gttaatcatg ctcgggtaat cgctgcggcc ggtttcggcc gtagaggaaa gtccatgctc       60

gcacggtgct gagatgcccg tagtgttcgt ggaaacacga gcgagaaacc caaatgatgg      120

taggggcacc ttcccgaagg aaatgaacgg agggaaggac aggcggcgca tgcagcctgt      180

agatagatga ttaccgccgg agtacgaggc gcaaagccgc ttgcagtacg aaggtacaga      240

acatggctta tagagcatga ttaacgtc                                         268


<210>  8
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Artifically synthesized oligonucleotide primer

<400>  8
gaaccggacc gaagcccg                                                     18


<210>  9
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Artifically synthesized oligonucleotide primer


<220>
<221>  misc_feature
<222>  (1)..(36)
<223>  The oligonucleotide primer can optionally have a gene-specific 
       primer attached at its 3' end

<400>  9
gactggagtt cagacgtgtg ctcttccgat cnnnnn                                 36


<210>  10
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Artifically synthesized oligonucleotide primer


<220>
<221>  misc_feature
<222>  (1)..(29)
<223>  The oligonucleotide primer can optionally have a gene-specific 
       primer attached at its 3' end

<400>  10
ccctacacga cgctcttccg atctnnnnn                                         29


<210>  11
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Artifically synthesized oligonucleotide primer


<220>
<221>  misc_feature
<222>  (24)..(25)
<223>  The oligonucleotide primer can optionally include a barcode 
       attached to the 24th and/or 25th nucleotide

<400>  11
caagcagaag acggcatacg agatgtgact ggagttcaga c                           41


<210>  12
<211>  54
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Artifically synthesized oligonucleotide primer

<400>  12
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccg             54


