                         SEQUENCE LISTING

<110>  Cepheid

<120>  MODIFIED THYMINE POLYNUCLEOTIDE OLIGOMERS AND METHODS

<130>  R2097-00276

<150>  61/972,389
<151>  2014-03-30

<160>  26    

<170>  PatentIn version 3.5

<210>  1
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: T1 Sequence

<220>
<221>  modified_base
<222>  (8)..(8)
<223>  TBP moiety


<400>  1
tttagacttc ttggattt                                                     18

<210>  2
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: T2  Sequence

<220>
<221>  modified_base
<222>  (12)..(12)
<223>  TBP moiety


<400>  2
tttagacttc ttggattt                                                     18

<210>  3
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: T1-2  Sequence

<220>
<221>  modified_base
<222>  (8)..(8)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (12)..(12)
<223>  TBP moiety


<400>  3
tttagacttc ttggattt                                                     18

<210>  4
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: O4 Sequence

<220>
<221>  modified_base
<222>  (8)..(8)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (9)..(9)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (11)..(11)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (12)..(12)
<223>  TBP moiety


<400>  4
tttagacttc ttggattt                                                     18

<210>  5
<211>  12
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: OC Sequence

<400>  5
tccaagaaat ct                                                           12

<210>  6
<211>  18
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: OO Sequence

<400>  6
tttagacttc ttggattt                                                     18


<210>  7
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  7
ctccgtggcc ttagctgtgc tc                                                22

<210>  8
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-1 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (2)..(2)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  8
ctccgtggcc ttagctgtgc tc                                                22

<210>  9
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-2 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (6)..(6)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  9
ctccgtggcc ttagctgtgc tc                                                22

<210>  10
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-3 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (11)..(11)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  10
ctccgtggcc ttagctgtgc tc                                                22

<210>  11
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-4 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (2)..(2)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (6)..(6)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  11
ctccgtggcc ttagctgtgc tc                                                22

<210>  12
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-5 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (2)..(2)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (6)..(6)
<223>  TBP moiety 

<220>
<221>  modified_base
<222>  (11)..(11)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  12
ctccgtggcc ttagctgtgc tc                                                22

<210>  13
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-6 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (12)..(12)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (16)..(16)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (18)..(18)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (21)..(21)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  13
ctccgtggcc ttagctgtgc tc                                                22

<210>  14
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-7 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (2)..(2)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (12)..(12)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (16)..(16)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (18)..(18)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (21)..(21)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  14
ctccgtggcc ttagctgtgc tc                                                22

<210>  15
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Pf1-T-8 Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (2)..(2)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (6)..(6)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (12)..(12)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (16)..(16)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (18)..(18)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (21)..(21)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  15
ctccgtggcc ttagctgtgc tc                                                22

<210>  16
<211>  21
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P1F  Sequence

<220>
<221>  modified_base
<222>  (20)..(20)
<223>  TBP moiety

<400>  16
attcctgaag ctgacagcat t                                                 21

<210>  17
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P1R  Sequence

<220>
<221>  modified_base
<222>  (9)..(9)
<223>  TBP moiety

<400>  17
aaatagcctc caggca                                                       16

<210>  18
<211>  16
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P1-1R Sequence

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  TBP moiety

<400>  18
aaatagcctc caggca                                                       16

<210>  19
<211>  22
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: Probe Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (16)..(16)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (18)..(18)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (22)..(22)
<223>  BHQ1 moiety

<400>  19
ccacggagcg agacatctcg gc                                                22

<210>  20
<211>  20
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P2F  Sequence

<400>  20
aattcctgaa gctgacagca                                                   20

<210>  21
<211>  17
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: P2R  Sequence

<220>
<221>  modified_base
<222>  (1)..(1)
<223>  FAM moiety

<220>
<221>  modified_base
<222>  (17)..(17)
<223>  BHQ1 moiety

<400>  21
aaatagcctc caggcca                                                      17

<210>  22
<211>  9
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: PNA-T1 Sequence

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  TBP moiety

<400>  22
cgatactgc                                                                9

<210>  23
<211>  9
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: PNA-T2 Sequence

<220>
<221>  modified_base
<222>  (7)..(7)
<223>  TBP moiety

<400>  23
cgatactgc                                                                9

<210>  24
<211>  9
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: PNA-T3 Sequence

<220>
<221>  modified_base
<222>  (4)..(4)
<223>  TBP moiety

<220>
<221>  modified_base
<222>  (7)..(7)
<223>  TBP moiety

<400>  24
cgatactgc                                                                9

<210>  25
<211>  9
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: control DNA Sequence

<400>  25
cgatactgc                                                                9

<210>  26
<211>  15
<212>  DNA
<213>  Artificial

<220>
<223>  Description of artificial sequence: target DNA Sequence

<400>  26
tttgcagtat cgttt                                                        15


