                         SEQUENCE LISTING

<110>  Fluoresentric, Inc.
       Caplin, Brian
       Hicke, Brian
       Green, Bryson
 
<120>  DNA AMPLIFICATION TECHNOLOGY

<130>  FLUO-004_03WO

<150>  62/023,123
<151>  2014-07-10

<150>  62/075,769
<151>  2014-11-05

<150>  62/115,559
<151>  2015-02-12

<160>  59    

<170>  PatentIn version 3.5

<210>  1
<211>  72
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  1
acctccaatg ccaaacatta ctccttgact caatgtttcc tgtgccagca tgcgcttatt       60

agacccatgg cc                                                           72


<210>  2
<211>  67
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  2
agcactcagt tattctgctg gtgcacttgc cagttgcatg ggcctcatat acaacaggat       60

gggggct                                                                 67


<210>  3
<211>  83
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  3
atggacgtgg cttagcgtat atttatgctg atggaaaaat ggtaaacgaa gctttagttc       60

gtcaaggctt ggctaaagtt gct                                               83


<210>  4
<211>  83
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  4
atggacgtgg cttagcgtat atttatgctg atggaaaaat ggtaaacgaa gctttagttc       60

gtcaaggctt ggctaaagtt gct                                               83


<210>  5
<211>  67
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  5
agcactcagt tattctgctg gtgcacttgc cagttgcatg ggcctcatat acaacaggat       60

gggggct                                                                 67


<210>  6
<211>  38
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  6
tggcaatccc aggttttctt ttctacctgt ttgctcaa                               38


<210>  7
<211>  36
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  7
cagacccatc ccccaggtga gggactatgg cctcct                                 36


<210>  8
<211>  30
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  8
tcaatggctg aggtgaggta ccccgcaggg                                        30


<210>  9
<211>  42
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  9
tttgctctga gagttccccc tgtcccctcc accttccctc ag                          42


<210>  10
<211>  45
<212>  DNA
<213>  artificial

<220>
<223>  Folded hairpin-like probe example

<400>  10
tgcaagagtc accaaaattg ccgagaggcc ccagttagca tccca                       45


<210>  11
<211>  47
<212>  DNA
<213>  artificial

<220>
<223>  Made in lab

<400>  11
gatcgatgct agctatggcc cctcagagcc ggctctgagg ggccata                     47


<210>  12
<211>  36
<212>  DNA
<213>  artificial

<220>
<223>  Salmonella forward primer without tag

<400>  12
cgacgaccct tctttttcct caatactgag cggctg                                 36


<210>  13
<211>  60
<212>  DNA
<213>  artificial

<220>
<223>  Salmonella reverse primer without tag

<400>  13
cgctgccggt atttgttatt ttatcggtgg ttttaagcgt actcttctat tttaaattcc       60


<210>  14
<211>  41
<212>  DNA
<213>  artificial

<220>
<223>  Salmonella forward primer with tag

<400>  14
cgtcgcgacg acccttcttt ttcctcaata ctgagcggct g                           41


<210>  15
<211>  65
<212>  DNA
<213>  artificial

<220>
<223>  Salmonella reverse primer with tag

<400>  15
cagcgcgctg ccggtatttg ttattttatc ggtggtttta agcgtactct tctattttaa       60

attcc                                                                   65


<210>  16
<211>  143
<212>  DNA
<213>  artificial

<220>
<223>  target sequence for first primer binding

<400>  16
cgacgaccct tctttttcct caatactgag cggctgctcg cctttgctgg ttttaggttt       60

ggcggcgcta cgttttgctt cacggaattt aaaatagaag agtacgctta aaaccaccga      120

taaaataaca aataccggca gcg                                              143


<210>  17
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  shorter Salmonella forward primer without tag

<400>  17
acccttcttt ttcctcaata ctgagcggct g                                      31


<210>  18
<211>  55
<212>  DNA
<213>  artificial

<220>
<223>  shorter Salmonella reverse primer without tag

<400>  18
ccggtatttg ttattttatc ggtggtttta agcgtactct tctattttaa attcc            55


<210>  19
<211>  133
<212>  DNA
<213>  artificial

<220>
<223>  target for second primer binding

<400>  19
acccttcttt ttcctcaata ctgagcggct gctcgccttt gctggtttta ggtttggcgg       60

cgctacgttt tgcttcacgg aatttaaaat agaagagtac gcttaaaacc accgataaaa      120

taacaaatac cgg                                                         133


<210>  20
<211>  153
<212>  DNA
<213>  artificial

<220>
<223>  target for complete primer with tag binding

<400>  20
cgtcgcgacg acccttcttt ttcctcaata ctgagcggct gctcgccttt gctggtttta       60

ggtttggcgg cgctacgttt tgcttcacgg aatttaaaat agaagagtac gcttaaaacc      120

accgataaaa taacaaatac cggcagcgcg ctg                                   153


<210>  21
<211>  180
<212>  DNA
<213>  Mycobacterium avium subsp. paratuberculosis str. k10

<400>  21
tcgaatccct ctccccgccc gggcggtacg acgcgccgag gaagcggtgc accagggcgc       60

gctcggcggc cgggtccttg agcggccagc cccataacgc caggaagacg cggatcagcc      120

actgcgccgc cagcgggtcg tcgtggccgg gcccgagcat ctcggcggcc agggccgtca      180


<210>  22
<211>  33
<212>  DNA
<213>  artificial

<220>
<223>  forward primer to amplify M. avium target

<400>  22
taccgcccgg gcccgggcgg tacgacgcgc cga                                    33


<210>  23
<211>  33
<212>  DNA
<213>  artificial

<220>
<223>  reverse primer to amplify M. avium target

<400>  23
ggccgggccc gggcccggcc acgacgaccc gct                                    33


<210>  24
<211>  35
<212>  DNA
<213>  artificial

<220>
<223>  Mfo1275fmut2 primer

<400>  24
cgtgcacacc cggccaaggt cgttgcggcc cagag                                  35


<210>  25
<211>  45
<212>  DNA
<213>  artificial

<220>
<223>  Mfo1490rmut2 primer

<400>  25
acggcgtttt cgattgtcgg atccaccccg gaggccctgc tcacc                       45


<210>  26
<211>  120
<212>  DNA
<213>  artificial

<220>
<223>  M. fortuitum synthetic template

<400>  26
cgtgcacacc cggccgaggt cgttgcggcc gagatcgact cggtcgcccc gcgccagcga       60

gtgcccgcga tcgacggtga ccagggcctc cgggctggat ccgacaatcg aaaacgccgt      120


<210>  27
<211>  29
<212>  DNA
<213>  artificial

<220>
<223>  SPWXMF_mut4 primer

<400>  27
ccagccaccc accaattcct gtgccagat                                         29


<210>  28
<211>  33
<212>  DNA
<213>  artificial

<220>
<223>  SPWXMR_mut4 primer

<400>  28
accggaggtc acttttgatg gccatgggtc tat                                    33


<210>  29
<211>  178
<212>  DNA
<213>  artificial

<220>
<223>  template for SPWXM primers

<400>  29
ctcgttagag gggctaaagc taacccacca attcctgtgc cagagaatat atagggcggt       60

gcatgaacaa tagccggtag gtatgtcaga aaacctccaa tgccaaacat tactccttga      120

caccgcctat atttagaccc atggccatca aaagtgaccc gagcaccatc gtttgttg        178


<210>  30
<211>  390
<212>  DNA
<213>  Xenorhabdus nematophila

<400>  30
tttatttttt agttatcaat atatctgagt tttatttttt agctacagtg tttttatttg       60

tttttttagc agccttactt aacagtattt tgttaatatc aacatatata agatatatta      120

ttatttcttt actatgctca ataactctat ctttacattt agatatatta ccatcatttg      180

atttaatatt tttcttgcct atatttattt ttgtttttat ctataaattt aatctcgtca      240

aaaaaagact ataattatat tgattaattt aagttttcag atgatataat caaattttat      300

tccaataata ccaatcatca ctgaaattgc ttaatttata ctgaagattt ggttatgtat      360

taaatagtta attcttatca tatactccct                                       390


<210>  31
<211>  109
<212>  DNA
<213>  artificial

<220>
<223>  exemplary forward primer for X. nematophila target

<400>  31
tttttagtta tcaatatatc tgagttttat tttttagcta cagtgttttt atttgttttt       60

ttagcagcct tacttaacag tattttgtta atatcaacat atataagat                  109


<210>  32
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming region sequence


<220>
<221>  misc_feature
<222>  (18)..(18)

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is a, c, g, or t

<400>  32
gtgtgggaag aggggganga gggggaggag c                                      31


<210>  33
<211>  30
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming region sequence


<220>
<221>  misc_feature
<222>  (14)..(14)

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, c, g, or t

<400>  33
gctgcctccc ctcntccctc ttccccacac                                        30


<210>  34
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming region sequence


<220>
<221>  misc_feature
<222>  (18)..(18)

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is a, c, g, or t

<400>  34
gtgtgggaag aggggganga gggggaggag c                                      31


<210>  35
<211>  30
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming region sequence


<220>
<221>  misc_feature
<222>  (14)..(14)

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, c, g, or t

<400>  35
gctgcctccc ctcntccctc ttccccacac                                        30


<210>  36
<211>  22
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming sequence

<400>  36
ggagggggag aagggagaag gg                                                22


<210>  37
<211>  22
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming sequence

<400>  37
cccttctccc ttctccccct cc                                                22


<210>  38
<211>  22
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming sequence

<400>  38
ggtgggggtg ttgggtgttg gg                                                22


<210>  39
<211>  22
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming sequence

<400>  39
ggtgggggtg ttgggtgttg gg                                                22


<210>  40
<211>  31
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming sequence


<220>
<221>  misc_feature
<222>  (18)..(18)

<220>
<221>  misc_feature
<222>  (18)..(18)
<223>  n is a, c, g, or t

<400>  40
gtgtgggaag aggggganga gggggaggag c                                      31


<210>  41
<211>  30
<212>  DNA
<213>  artificial

<220>
<223>  Triplex forming sequence


<220>
<221>  misc_feature
<222>  (14)..(14)

<220>
<221>  misc_feature
<222>  (14)..(14)
<223>  n is a, c, g, or t

<400>  41
gctgcctccc ctcntccctc ttccccacac                                        30


<210>  42
<211>  13
<212>  DNA
<213>  unknown

<220>
<223>  Naturally occurring TFR sequence in double stranded DNA

<400>  42
ttttttcccg tcc                                                          13


<210>  43
<211>  12
<212>  DNA
<213>  unknown

<220>
<223>  Naturally occurring TFR sequence in double stranded DNA

<400>  43
ggacgggaaa aa                                                           12


<210>  44
<211>  17
<212>  DNA
<213>  Spirometra erinaceieuropaei

<400>  44
ggcgaggggg gagcggg                                                      17


<210>  45
<211>  17
<212>  DNA
<213>  Toxocara canis

<400>  45
cccgctcccc cctcgcc                                                      17


<210>  46
<211>  13
<212>  DNA
<213>  unknown

<220>
<223>  Naturally occurring TFR sequence in double stranded DNA

<400>  46
ggaggtgggg gag                                                          13


<210>  47
<211>  13
<212>  DNA
<213>  unknown

<220>
<223>  Naturally occurring TFR sequence in double stranded DNA

<400>  47
ctcccccacc tcc                                                          13


<210>  48
<211>  13
<212>  DNA
<213>  unknown

<220>
<223>  Naturally occurring TFR sequence in double stranded DNA

<400>  48
ggaggtgggg gag                                                          13


<210>  49
<211>  14
<212>  DNA
<213>  unknown

<220>
<223>  Naturally occurring TFR sequence in double stranded DNA

<400>  49
ctccccccac ctcc                                                         14


<210>  50
<211>  30
<212>  DNA
<213>  Streptococcus dysgalactiae

<400>  50
ggagaaggtg aggaagaaga agaggaagaa                                        30


<210>  51
<211>  38
<212>  DNA
<213>  artificial

<220>
<223>  exemplary forward primer for X. nematophila target

<400>  51
tttttagtta tcaatatatc tgagttttat tttttagc                               38


<210>  52
<211>  38
<212>  DNA
<213>  artificial

<220>
<223>  exemplary reverse primer for X. nematophila target

<400>  52
atcttatata tgttgatatt aacaaaatac tgttaagt                               38


<210>  53
<211>  30
<212>  DNA
<213>  artificial

<220>
<223>  exemplary probe for X. nematophila target

<400>  53
cagtgttttt atttgttttt ttagcagcct                                        30


<210>  54
<211>  372
<212>  DNA
<213>  Trichomonas foetus

<400>  54
cggtaggtga acctgccgtt ggatcagttt cgttaataat tacaaacata tttttttaat       60

gtctataact atttatacaa aattaaacac ataatctaaa aaatttagac cttaggcaat      120

ggatgtcttg gcttcttaca cgatgaagaa cgttgcataa tgcgataagc ggctggatta      180

gctttctttg cgacaagttc gatctttgaa tgcacattgc gcgccgtttt agcttgctag      240

aacacgcata tatgttacag taacccatat taatttaata ccaaattctc tttttaagca      300

aaagagcgaa aaacaaatat gtattaacaa aagggttctg tctcatatag gaagacccgc      360

tgaactgaag ca                                                          372


<210>  55
<211>  266
<212>  DNA
<213>  Trichomonas foetus

<400>  55
agaccttagg caatggatgt cttggcttct tacacgatga agaacgttgc ataatgcgat       60

aagcggctgg attagctttc tttgcgacaa gttcgatctt tgaatgcaca ttgcgcgccg      120

ttttagcttg ctagaacacg catatatgtt acagtaaccc atattaattt aataccaaat      180

tctcttttta agcaaaagag cgaaaaacaa atatgtatta acaaaagggt tctgtctcat      240

ataggaagac ccgctgaact gaagca                                           266


<210>  56
<211>  46
<212>  DNA
<213>  artificial

<220>
<223>  exemplary forward primer for Trichomonas

<400>  56
agaccttagg caatggatgt cttggcttct tacacgatga agaacg                      46


<210>  57
<211>  42
<212>  DNA
<213>  artificial

<220>
<223>  exemplary reverse primer for Trichomonas

<400>  57
tgcttcagtt cagcgggtct tcctatatga gacagaaccc tt                          42


<210>  58
<211>  60
<212>  DNA
<213>  artificial

<220>
<223>  exemplary probe for Trichomonas

<400>  58
aagcggctgg attagctttc tttgcgacaa gttcgatctt tgaatgcaca ttgcgcgccg       60


<210>  59
<211>  62
<212>  DNA
<213>  artificial

<220>
<223>  exemplary probe for Trichomonas

<400>  59
aagcggctgg attagctttc tttgcgacaa gttcgatctt tgaatgcaca ttgcgcgcgc       60

cg                                                                      62


