                         SEQUENCE LISTING

<110>  BASF Plant Science Company GmbH
 
<120>  Elementary mode analysis for improving plant traits

<130>  PF77363

<160>  6     

<170>  PatentIn version 3.5

<210>  1
<211>  1296
<212>  DNA
<213>  Escherichia coli


<220>
<221>  CDS
<222>  (1)..(1296)

<400>  1
atg gtt agt tta gag aag aac gat cac tta atg ttg gcg cgc cag ctg         48
Met Val Ser Leu Glu Lys Asn Asp His Leu Met Leu Ala Arg Gln Leu           
1               5                   10                  15                

cca ttg aaa tct gtt gcc ctg ata ctg gcg gga gga cgt ggt acc cgc         96
Pro Leu Lys Ser Val Ala Leu Ile Leu Ala Gly Gly Arg Gly Thr Arg           
            20                  25                  30                    

ctg aag gat tta acc aat aag cga gca aaa ccg gcc gta cac ttc ggc        144
Leu Lys Asp Leu Thr Asn Lys Arg Ala Lys Pro Ala Val His Phe Gly           
        35                  40                  45                        

ggt aag ttc cgc att atc gac ttt gcg ctg tct aac tgc atc aac tcc        192
Gly Lys Phe Arg Ile Ile Asp Phe Ala Leu Ser Asn Cys Ile Asn Ser           
    50                  55                  60                            

ggg atc aag cgt atg ggc gtg atc acc cag tac cag tcc cac act ctg        240
Gly Ile Lys Arg Met Gly Val Ile Thr Gln Tyr Gln Ser His Thr Leu           
65                  70                  75                  80            

gtg cag cac att cag cgc ggc tgg tca ttc ttc aat gaa gaa atg aac        288
Val Gln His Ile Gln Arg Gly Trp Ser Phe Phe Asn Glu Glu Met Asn           
                85                  90                  95                

gag ttt gtc gat ctg ctg cca gca cag cag aga atg aaa ggg gaa aac        336
Glu Phe Val Asp Leu Leu Pro Ala Gln Gln Arg Met Lys Gly Glu Asn           
            100                 105                 110                   

tgg tat cgc ggc acc gca gat gcg gtc acc caa aac ctc gac att atc        384
Trp Tyr Arg Gly Thr Ala Asp Ala Val Thr Gln Asn Leu Asp Ile Ile           
        115                 120                 125                       

cgt cgt tat aaa gcg gaa tac gtg gtg atc ctg gcg ggc gac cat atc        432
Arg Arg Tyr Lys Ala Glu Tyr Val Val Ile Leu Ala Gly Asp His Ile           
    130                 135                 140                           

tac aag caa gac tac tcg cgt atg ctt atc gat cac gtc gaa aaa ggt        480
Tyr Lys Gln Asp Tyr Ser Arg Met Leu Ile Asp His Val Glu Lys Gly           
145                 150                 155                 160           

gta cgt tgt acc gtt gtt tgt atg cca gta ccg att gaa gaa gcc tcc        528
Val Arg Cys Thr Val Val Cys Met Pro Val Pro Ile Glu Glu Ala Ser           
                165                 170                 175               

gca ttt ggc gtt atg gcg gtt gat gag aac gat aaa act atc gaa ttc        576
Ala Phe Gly Val Met Ala Val Asp Glu Asn Asp Lys Thr Ile Glu Phe           
            180                 185                 190                   

gtg gaa aaa cct gct aac ccg ccg tca atg ccg aac gat ccg agc aaa        624
Val Glu Lys Pro Ala Asn Pro Pro Ser Met Pro Asn Asp Pro Ser Lys           
        195                 200                 205                       

tct ctg gcg agt atg ggt atc tac gtc ttt gac gcc gac tat ctg tat        672
Ser Leu Ala Ser Met Gly Ile Tyr Val Phe Asp Ala Asp Tyr Leu Tyr           
    210                 215                 220                           

gaa ctg ctg gaa gaa gac gat cgc gat gag aac tcc agc cac gac ttt        720
Glu Leu Leu Glu Glu Asp Asp Arg Asp Glu Asn Ser Ser His Asp Phe           
225                 230                 235                 240           

ggc aaa gat ttg att ccc aag atc acc gaa gcc ggt ctg gcc tat gcg        768
Gly Lys Asp Leu Ile Pro Lys Ile Thr Glu Ala Gly Leu Ala Tyr Ala           
                245                 250                 255               

cac ccg ttc ccg ctc tct tgc gta caa tcc gac ccg gat gcc gag ccg        816
His Pro Phe Pro Leu Ser Cys Val Gln Ser Asp Pro Asp Ala Glu Pro           
            260                 265                 270                   

tac tgg cgc gat gtg ggt acg ctg gaa gct tac tgg aaa gcg aac ctc        864
Tyr Trp Arg Asp Val Gly Thr Leu Glu Ala Tyr Trp Lys Ala Asn Leu           
        275                 280                 285                       

gat ctg gcc tct gtg gtg gac aaa ctg gat atg tac gat cgc aat tgg        912
Asp Leu Ala Ser Val Val Asp Lys Leu Asp Met Tyr Asp Arg Asn Trp           
    290                 295                 300                           

cca att cgc acc tac aat gaa tca tta ccg cca gcg aaa ttc gtg cag        960
Pro Ile Arg Thr Tyr Asn Glu Ser Leu Pro Pro Ala Lys Phe Val Gln           
305                 310                 315                 320           

gat cgc tcc ggt agc cac ggg atg acc ctt aac tca ctg gtt tcc gac       1008
Asp Arg Ser Gly Ser His Gly Met Thr Leu Asn Ser Leu Val Ser Asp           
                325                 330                 335               

ggt tgt gtg atc tcc ggt tcg gtg gtg gtg cag tcc gtt ctg ttc tcg       1056
Gly Cys Val Ile Ser Gly Ser Val Val Val Gln Ser Val Leu Phe Ser           
            340                 345                 350                   

cgc gtt cgc gtg aat tca ttc tgc aac att gat tcc gcc gta ttg tta       1104
Arg Val Arg Val Asn Ser Phe Cys Asn Ile Asp Ser Ala Val Leu Leu           
        355                 360                 365                       

ccg gaa gta tgg gta ggt cgc tcg tgc cgt ctg cgc cgc tgc gtc atc       1152
Pro Glu Val Trp Val Gly Arg Ser Cys Arg Leu Arg Arg Cys Val Ile           
    370                 375                 380                           

gat cgt gct tgt gtt att ccg gaa ggc atg gtg att ggt gaa aac gca       1200
Asp Arg Ala Cys Val Ile Pro Glu Gly Met Val Ile Gly Glu Asn Ala           
385                 390                 395                 400           

gag gaa gat gca cgt cgt ttc tat cgt tca gaa gaa ggc atc gtg ctg       1248
Glu Glu Asp Ala Arg Arg Phe Tyr Arg Ser Glu Glu Gly Ile Val Leu           
                405                 410                 415               

gta acg cgc gaa atg cta cgg aag tta ggg cat aaa cag gag cga taa       1296
Val Thr Arg Glu Met Leu Arg Lys Leu Gly His Lys Gln Glu Arg               
            420                 425                 430                   


<210>  2
<211>  431
<212>  PRT
<213>  Escherichia coli

<400>  2

Met Val Ser Leu Glu Lys Asn Asp His Leu Met Leu Ala Arg Gln Leu 
1               5                   10                  15      


Pro Leu Lys Ser Val Ala Leu Ile Leu Ala Gly Gly Arg Gly Thr Arg 
            20                  25                  30          


Leu Lys Asp Leu Thr Asn Lys Arg Ala Lys Pro Ala Val His Phe Gly 
        35                  40                  45              


Gly Lys Phe Arg Ile Ile Asp Phe Ala Leu Ser Asn Cys Ile Asn Ser 
    50                  55                  60                  


Gly Ile Lys Arg Met Gly Val Ile Thr Gln Tyr Gln Ser His Thr Leu 
65                  70                  75                  80  


Val Gln His Ile Gln Arg Gly Trp Ser Phe Phe Asn Glu Glu Met Asn 
                85                  90                  95      


Glu Phe Val Asp Leu Leu Pro Ala Gln Gln Arg Met Lys Gly Glu Asn 
            100                 105                 110         


Trp Tyr Arg Gly Thr Ala Asp Ala Val Thr Gln Asn Leu Asp Ile Ile 
        115                 120                 125             


Arg Arg Tyr Lys Ala Glu Tyr Val Val Ile Leu Ala Gly Asp His Ile 
    130                 135                 140                 


Tyr Lys Gln Asp Tyr Ser Arg Met Leu Ile Asp His Val Glu Lys Gly 
145                 150                 155                 160 


Val Arg Cys Thr Val Val Cys Met Pro Val Pro Ile Glu Glu Ala Ser 
                165                 170                 175     


Ala Phe Gly Val Met Ala Val Asp Glu Asn Asp Lys Thr Ile Glu Phe 
            180                 185                 190         


Val Glu Lys Pro Ala Asn Pro Pro Ser Met Pro Asn Asp Pro Ser Lys 
        195                 200                 205             


Ser Leu Ala Ser Met Gly Ile Tyr Val Phe Asp Ala Asp Tyr Leu Tyr 
    210                 215                 220                 


Glu Leu Leu Glu Glu Asp Asp Arg Asp Glu Asn Ser Ser His Asp Phe 
225                 230                 235                 240 


Gly Lys Asp Leu Ile Pro Lys Ile Thr Glu Ala Gly Leu Ala Tyr Ala 
                245                 250                 255     


His Pro Phe Pro Leu Ser Cys Val Gln Ser Asp Pro Asp Ala Glu Pro 
            260                 265                 270         


Tyr Trp Arg Asp Val Gly Thr Leu Glu Ala Tyr Trp Lys Ala Asn Leu 
        275                 280                 285             


Asp Leu Ala Ser Val Val Asp Lys Leu Asp Met Tyr Asp Arg Asn Trp 
    290                 295                 300                 


Pro Ile Arg Thr Tyr Asn Glu Ser Leu Pro Pro Ala Lys Phe Val Gln 
305                 310                 315                 320 


Asp Arg Ser Gly Ser His Gly Met Thr Leu Asn Ser Leu Val Ser Asp 
                325                 330                 335     


Gly Cys Val Ile Ser Gly Ser Val Val Val Gln Ser Val Leu Phe Ser 
            340                 345                 350         


Arg Val Arg Val Asn Ser Phe Cys Asn Ile Asp Ser Ala Val Leu Leu 
        355                 360                 365             


Pro Glu Val Trp Val Gly Arg Ser Cys Arg Leu Arg Arg Cys Val Ile 
    370                 375                 380                 


Asp Arg Ala Cys Val Ile Pro Glu Gly Met Val Ile Gly Glu Asn Ala 
385                 390                 395                 400 


Glu Glu Asp Ala Arg Arg Phe Tyr Arg Ser Glu Glu Gly Ile Val Leu 
                405                 410                 415     


Val Thr Arg Glu Met Leu Arg Lys Leu Gly His Lys Gln Glu Arg 
            420                 425                 430     


<210>  3
<211>  1434
<212>  DNA
<213>  Escherichia coli


<220>
<221>  CDS
<222>  (1)..(1434)

<400>  3
atg gcc ccc tcc gtg atg gcg tcg tcg gcc acc acc gtc gct ccc ttc         48
Met Ala Pro Ser Val Met Ala Ser Ser Ala Thr Thr Val Ala Pro Phe           
1               5                   10                  15                

cag ggg ctc aag tcc acc gcc ggc atg ccc gtc gcc cgc cgc tcc ggc         96
Gln Gly Leu Lys Ser Thr Ala Gly Met Pro Val Ala Arg Arg Ser Gly           
            20                  25                  30                    

aac tcc agc ttc ggc aac gtc agc aat ggc ggc agg atc agg tgc gtt        144
Asn Ser Ser Phe Gly Asn Val Ser Asn Gly Gly Arg Ile Arg Cys Val           
        35                  40                  45                        

agt tta gag aag aac gat cac tta atg ttg gcg cgc cag ctg cca ttg        192
Ser Leu Glu Lys Asn Asp His Leu Met Leu Ala Arg Gln Leu Pro Leu           
    50                  55                  60                            

aaa tct gtt gcc ctg ata ctg gcg gga gga cgt ggt acc cgc ctg aag        240
Lys Ser Val Ala Leu Ile Leu Ala Gly Gly Arg Gly Thr Arg Leu Lys           
65                  70                  75                  80            

gat tta acc aat aag cga gca aaa ccg gcc gta cac ttc ggc ggt aag        288
Asp Leu Thr Asn Lys Arg Ala Lys Pro Ala Val His Phe Gly Gly Lys           
                85                  90                  95                

ttc cgc att atc gac ttt gcg ctg tct aac tgc atc aac tcc ggg atc        336
Phe Arg Ile Ile Asp Phe Ala Leu Ser Asn Cys Ile Asn Ser Gly Ile           
            100                 105                 110                   

aag cgt atg ggc gtg atc acc cag tac cag tcc cac act ctg gtg cag        384
Lys Arg Met Gly Val Ile Thr Gln Tyr Gln Ser His Thr Leu Val Gln           
        115                 120                 125                       

cac att cag cgc ggc tgg tca ttc ttc aat gaa gaa atg aac gag ttt        432
His Ile Gln Arg Gly Trp Ser Phe Phe Asn Glu Glu Met Asn Glu Phe           
    130                 135                 140                           

gtc gat ctg ctg cca gca cag cag aga atg aaa ggg gaa aac tgg tat        480
Val Asp Leu Leu Pro Ala Gln Gln Arg Met Lys Gly Glu Asn Trp Tyr           
145                 150                 155                 160           

cgc ggc acc gca gat gcg gtc acc caa aac ctc gac att atc cgt cgt        528
Arg Gly Thr Ala Asp Ala Val Thr Gln Asn Leu Asp Ile Ile Arg Arg           
                165                 170                 175               

tat aaa gcg gaa tac gtg gtg atc ctg gcg ggc gac cat atc tac aag        576
Tyr Lys Ala Glu Tyr Val Val Ile Leu Ala Gly Asp His Ile Tyr Lys           
            180                 185                 190                   

caa gac tac tcg cgt atg ctt atc gat cac gtc gaa aaa ggt gta cgt        624
Gln Asp Tyr Ser Arg Met Leu Ile Asp His Val Glu Lys Gly Val Arg           
        195                 200                 205                       

tgt acc gtt gtt tgt atg cca gta ccg att gaa gaa gcc tcc gca ttt        672
Cys Thr Val Val Cys Met Pro Val Pro Ile Glu Glu Ala Ser Ala Phe           
    210                 215                 220                           

ggc gtt atg gcg gtt gat gag aac gat aaa act atc gaa ttc gtg gaa        720
Gly Val Met Ala Val Asp Glu Asn Asp Lys Thr Ile Glu Phe Val Glu           
225                 230                 235                 240           

aaa cct gct aac ccg ccg tca atg ccg aac gat ccg agc aaa tct ctg        768
Lys Pro Ala Asn Pro Pro Ser Met Pro Asn Asp Pro Ser Lys Ser Leu           
                245                 250                 255               

gcg agt atg ggt atc tac gtc ttt gac gcc gac tat ctg tat gaa ctg        816
Ala Ser Met Gly Ile Tyr Val Phe Asp Ala Asp Tyr Leu Tyr Glu Leu           
            260                 265                 270                   

ctg gaa gaa gac gat cgc gat gag aac tcc agc cac gac ttt ggc aaa        864
Leu Glu Glu Asp Asp Arg Asp Glu Asn Ser Ser His Asp Phe Gly Lys           
        275                 280                 285                       

gat ttg att ccc aag atc acc gaa gcc ggt ctg gcc tat gcg cac ccg        912
Asp Leu Ile Pro Lys Ile Thr Glu Ala Gly Leu Ala Tyr Ala His Pro           
    290                 295                 300                           

ttc ccg ctc tct tgc gta caa tcc gac ccg gat gcc gag ccg tac tgg        960
Phe Pro Leu Ser Cys Val Gln Ser Asp Pro Asp Ala Glu Pro Tyr Trp           
305                 310                 315                 320           

cgc gat gtg ggt acg ctg gaa gct tac tgg aaa gcg aac ctc gat ctg       1008
Arg Asp Val Gly Thr Leu Glu Ala Tyr Trp Lys Ala Asn Leu Asp Leu           
                325                 330                 335               

gcc tct gtg gtg gac aaa ctg gat atg tac gat cgc aat tgg cca att       1056
Ala Ser Val Val Asp Lys Leu Asp Met Tyr Asp Arg Asn Trp Pro Ile           
            340                 345                 350                   

cgc acc tac aat gaa tca tta ccg cca gcg aaa ttc gtg cag gat cgc       1104
Arg Thr Tyr Asn Glu Ser Leu Pro Pro Ala Lys Phe Val Gln Asp Arg           
        355                 360                 365                       

tcc ggt agc cac ggg atg acc ctt aac tca ctg gtt tcc gac ggt tgt       1152
Ser Gly Ser His Gly Met Thr Leu Asn Ser Leu Val Ser Asp Gly Cys           
    370                 375                 380                           

gtg atc tcc ggt tcg gtg gtg gtg cag tcc gtt ctg ttc tcg cgc gtt       1200
Val Ile Ser Gly Ser Val Val Val Gln Ser Val Leu Phe Ser Arg Val           
385                 390                 395                 400           

cgc gtg aat tca ttc tgc aac att gat tcc gcc gta ttg tta ccg gaa       1248
Arg Val Asn Ser Phe Cys Asn Ile Asp Ser Ala Val Leu Leu Pro Glu           
                405                 410                 415               

gta tgg gta ggt cgc tcg tgc cgt ctg cgc cgc tgc gtc atc gat cgt       1296
Val Trp Val Gly Arg Ser Cys Arg Leu Arg Arg Cys Val Ile Asp Arg           
            420                 425                 430                   

gct tgt gtt att ccg gaa ggc atg gtg att ggt gaa aac gca gag gaa       1344
Ala Cys Val Ile Pro Glu Gly Met Val Ile Gly Glu Asn Ala Glu Glu           
        435                 440                 445                       

gat gca cgt cgt ttc tat cgt tca gaa gaa ggc atc gtg ctg gta acg       1392
Asp Ala Arg Arg Phe Tyr Arg Ser Glu Glu Gly Ile Val Leu Val Thr           
    450                 455                 460                           

cgc gaa atg cta cgg aag tta ggg cat aaa cag gag cga taa               1434
Arg Glu Met Leu Arg Lys Leu Gly His Lys Gln Glu Arg                       
465                 470                 475                               


<210>  4
<211>  477
<212>  PRT
<213>  Escherichia coli

<400>  4

Met Ala Pro Ser Val Met Ala Ser Ser Ala Thr Thr Val Ala Pro Phe 
1               5                   10                  15      


Gln Gly Leu Lys Ser Thr Ala Gly Met Pro Val Ala Arg Arg Ser Gly 
            20                  25                  30          


Asn Ser Ser Phe Gly Asn Val Ser Asn Gly Gly Arg Ile Arg Cys Val 
        35                  40                  45              


Ser Leu Glu Lys Asn Asp His Leu Met Leu Ala Arg Gln Leu Pro Leu 
    50                  55                  60                  


Lys Ser Val Ala Leu Ile Leu Ala Gly Gly Arg Gly Thr Arg Leu Lys 
65                  70                  75                  80  


Asp Leu Thr Asn Lys Arg Ala Lys Pro Ala Val His Phe Gly Gly Lys 
                85                  90                  95      


Phe Arg Ile Ile Asp Phe Ala Leu Ser Asn Cys Ile Asn Ser Gly Ile 
            100                 105                 110         


Lys Arg Met Gly Val Ile Thr Gln Tyr Gln Ser His Thr Leu Val Gln 
        115                 120                 125             


His Ile Gln Arg Gly Trp Ser Phe Phe Asn Glu Glu Met Asn Glu Phe 
    130                 135                 140                 


Val Asp Leu Leu Pro Ala Gln Gln Arg Met Lys Gly Glu Asn Trp Tyr 
145                 150                 155                 160 


Arg Gly Thr Ala Asp Ala Val Thr Gln Asn Leu Asp Ile Ile Arg Arg 
                165                 170                 175     


Tyr Lys Ala Glu Tyr Val Val Ile Leu Ala Gly Asp His Ile Tyr Lys 
            180                 185                 190         


Gln Asp Tyr Ser Arg Met Leu Ile Asp His Val Glu Lys Gly Val Arg 
        195                 200                 205             


Cys Thr Val Val Cys Met Pro Val Pro Ile Glu Glu Ala Ser Ala Phe 
    210                 215                 220                 


Gly Val Met Ala Val Asp Glu Asn Asp Lys Thr Ile Glu Phe Val Glu 
225                 230                 235                 240 


Lys Pro Ala Asn Pro Pro Ser Met Pro Asn Asp Pro Ser Lys Ser Leu 
                245                 250                 255     


Ala Ser Met Gly Ile Tyr Val Phe Asp Ala Asp Tyr Leu Tyr Glu Leu 
            260                 265                 270         


Leu Glu Glu Asp Asp Arg Asp Glu Asn Ser Ser His Asp Phe Gly Lys 
        275                 280                 285             


Asp Leu Ile Pro Lys Ile Thr Glu Ala Gly Leu Ala Tyr Ala His Pro 
    290                 295                 300                 


Phe Pro Leu Ser Cys Val Gln Ser Asp Pro Asp Ala Glu Pro Tyr Trp 
305                 310                 315                 320 


Arg Asp Val Gly Thr Leu Glu Ala Tyr Trp Lys Ala Asn Leu Asp Leu 
                325                 330                 335     


Ala Ser Val Val Asp Lys Leu Asp Met Tyr Asp Arg Asn Trp Pro Ile 
            340                 345                 350         


Arg Thr Tyr Asn Glu Ser Leu Pro Pro Ala Lys Phe Val Gln Asp Arg 
        355                 360                 365             


Ser Gly Ser His Gly Met Thr Leu Asn Ser Leu Val Ser Asp Gly Cys 
    370                 375                 380                 


Val Ile Ser Gly Ser Val Val Val Gln Ser Val Leu Phe Ser Arg Val 
385                 390                 395                 400 


Arg Val Asn Ser Phe Cys Asn Ile Asp Ser Ala Val Leu Leu Pro Glu 
                405                 410                 415     


Val Trp Val Gly Arg Ser Cys Arg Leu Arg Arg Cys Val Ile Asp Arg 
            420                 425                 430         


Ala Cys Val Ile Pro Glu Gly Met Val Ile Gly Glu Asn Ala Glu Glu 
        435                 440                 445             


Asp Ala Arg Arg Phe Tyr Arg Ser Glu Glu Gly Ile Val Leu Val Thr 
    450                 455                 460                 


Arg Glu Met Leu Arg Lys Leu Gly His Lys Gln Glu Arg 
465                 470                 475         


<210>  5
<211>  141
<212>  DNA
<213>  Spinacia oleracea

<400>  5
atggccccct ccgtgatggc gtcgtcggcc accaccgtcg ctcccttcca ggggctcaag       60

tccaccgccg gcatgcccgt cgcccgccgc tccggcaact ccagcttcgg caacgtcagc      120

aatggcggca ggatcaggtg c                                                141


<210>  6
<211>  654
<212>  DNA
<213>  Oryza sativa

<400>  6
cttctacatc ggcttaggtg tagcaacacg actttattat tattattatt attattatta       60

ttattttaca aaaatataaa atagatcagt ccctcaccac aagtagagca agttggtgag      120

ttattgtaaa gttctacaaa gctaatttaa aagttattgc attaacttat ttcatattac      180

aaacaagagt gtcaatggaa caatgaaaac catatgacat actataattt tgtttttatt      240

attgaaatta tataattcaa agagaataaa tccacatagc cgtaaagttc tacatgtggt      300

gcattaccaa aatatatata gcttacaaaa catgacaagc ttagtttgaa aaattgcaat      360

ccttatcaca ttgacacata aagtgagtga tgagtcataa tattattttt cttgctaccc      420

atcatgtata tatgatagcc acaaagttac tttgatgatg atatcaaaga acatttttag      480

gtgcacctaa cagaatatcc aaataatatg actcacttag atcataatag agcatcaagt      540

aaaactaaca ctctaaagca accgatggga aagcatctat aaatagacaa gcacaatgaa      600

aatcctcatc atccttcacc acaattcaaa tattatagtt gaagcatagt agta            654


