                               SEQUENCE LISTING

<110> SIEMENS HEALTHCARE DIAGNOSTICS INC.
 
<120> REAGENTS AND METHODS FOR ANALYSIS OF HIV

<130> 2014P20087WO

<140> PCT/US2016/052184
<141> 2016-09-16

<150> 62/220,508
<151> 2015-09-18

<160> 152   

<170> PatentIn version 3.5

<210> 1
<211> 9684
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (2218)..(2218)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6064)..(6064)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6796)..(6796)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7402)..(7402)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7423)..(7423)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7426)..(7426)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7432)..(7433)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7436)..(7436)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7543)..(7543)
<223> a, c, t, g, unknown or other

<400> 1
tggatgggct aatttactcc aagaaaagac aagagatcct tgacttatgg gtctataata       60

cacaaggctt cttccctgat tggcaaaact acacaccagg gccagggatc agatacccac      120

tgtgttttgg atggtgcttc aagctagtac cagttgaccc aagagaagta gaggaggaca      180

acaaaggaga aaacaactgc ctgttacacc ccatgagcca gcatggaata gatgacgaag      240

aaagagaagt gctgatgtgg aagtttgaca gtgccctagc acgaaaacac atagcccgag      300

aactgcatcc agagtactat aaagactgct gacaaagaag tttctaacca ggacttccgc      360

tggggacttt ccaggggagg tgtggccggg gcggagttgg ggagtggcta accctcagat      420

gctgcataaa agcagccgct tttcgcttgt actgggtctc tcttgttaga ccaggtcgag      480

cccgggagct ctctggctag caagggaacc cactgcttaa agcctcaata aagcttgcct      540

tgagtgctta aagtggtgtg tgcccgtctg tgttaggact ctggtaacta gagatccctc      600

agaccactct agactgagta aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc      660

gaaagttaat agggactcga aagcgaaagt tccagagaag ttctctcgac gcaggactcg      720

gcttgctgag gtgcacacag caagaggcga gagcggcgac tggtgagtac gccaaatttt      780

gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agtgggggaa      840

aattagatgc atgggaaaaa attcggttac ggccaggggg aaagaaaaaa tataggatga      900

aacatttagt atgggcaagc agagagttag aaagattcgc acttaaccct ggccttttag      960

aaacagcaga aggatgtcaa caaataatag aacagttaca gtcaactctc aagacaggat     1020

cagaagaact taaatcatta tttaatacag tagcaaccct ctggtgcgta caccaaagga     1080

tagaggtaaa agacaccaag gaagctttag ataaaataga ggaagtacaa aataagagcc     1140

agcaaaagac acagcaggca gcagctggca caggaagcag cagcaaagtc agccaaaatt     1200

accctatagt gcaaaatgca caagggcaaa tggtacatca gcctttatca cctagaactt     1260

tgaatgcatg ggtgaaagta gtagaagaaa agggttttaa cccagaagta atacccatgt     1320

tctcagcatt atcagaggga gccaccccac aagatttaaa tatgatgcta aatatagtgg     1380

ggggacacca ggcagcaatg caaatgttaa aagaaaccat caatgaggaa gctgcagaat     1440

gggatagggt acacccagta catgcagggc ctattccacc aggccagatg agggaaccaa     1500

ggggaagtga catagcagga actactagta cccttcaaga acaaatagga tggatgacaa     1560

acaatccacc tatcccagtg ggagacatct ataaaaggtg gataatcctg ggattaaata     1620

aaatagtaag aatgtatagc cctgttagca ttttggacat aagacaaggg ccaaaagaac     1680

ccttcagaga ctatgtagat aggttctata aaactctcag agcggaacaa gctacacagg     1740

aggtaaaaaa ctggatgaca gaaaccttgc tagtccaaaa tgcgaatcca gactgtaagt     1800

ccattttaaa agcattagga acaggagcta cattagaaga aatgatgaca gcatgccagg     1860

gagtgggagg acctagccat aaagcaaggg ttttggctga ggcaatgagc caagcacaac     1920

atgcaaatat aatgatgcag agaggcaatt ttaagggcca gaaaagaatt aagtgcttca     1980

actgtggcaa agaaggacac ctagccagaa attgcagggc ccctagaaaa aagggttgtt     2040

ggaaatgtgg gaaggaagga catcaaatga aagactgcac tgagagacag gctaattttt     2100

tagggaaaat ttggccttcc aacaagggaa ggccggggaa ttttcctcag agcagaccag     2160

agccaacagc cccaccagca gaaaactggg ggatggggga agagataacc tccttacnga     2220

agcaggagca gaaagacaag gaacatcctc ctcctttagt ttccctcaaa tcactctttg     2280

gcaacgaccc cttgtcacag taaaaatagg aggacagctg aaagaagctc tattagatac     2340

aggagcagat gatacagtat tagaagatat aaatttgcca ggaaaatgga aaccaaaaat     2400

gataggggga attggaggtt ttatcaaggt aaggcaatat gatcagatac ttatagaaat     2460

ttgtggaaaa aaggctatag gtacagtatt agtaggacct acacctgtca acataattgg     2520

acgaaatatg ttgactcaga ttggttgtac tttaaatttc ccaattagtc ctattgacac     2580

tgtaccagta acattaaagc caggaatgga tggaccaaag gttaaacagt ggccattgac     2640

agaagaaaaa ataaaagcat taacagaaat ttgtaaagag atggaagagg aaggaaaaat     2700

ctcaaaaatt gggcctgaaa atccatacaa tactccagta tttgctataa agaaaaagga     2760

cagcaccaaa tggaggaaat tagtagattt cagagagctc aataaaagaa ctcaggactt     2820

ttgggaagtt caattaggaa taccgcatcc agcaggttta aaaaagaaaa aatcagtaac     2880

agtactagat gtgggagatg catatttttc agttccttta gatgaaagct ttagaaagta     2940

tactgcattc accataccta gtataaacaa tgagacacca ggaatcagat atcagtacaa     3000

tgtgctgcca cagggatgga aaggatcacc ggcaatattc cagagtagca tgacaaaaat     3060

cttagagccc tttagaataa aaaatccaga aatggttatc tatcaataca tggatgactt     3120

gtatgtagga tctgatttag aaatagggca gcacagaaca aaaatagagg agctaagagc     3180

tcatctattg agctggggat ttactacacc agacaaaaag catcagaagg aacctccatt     3240

cctttggatg ggatatgaac tccatcctga cagatggaca gtccagccta tagaactgcc     3300

agaaaaagac agctggactg tcaatgatat acagaaatta gtgggaaaac taaattgggc     3360

aagtcaaatt tatgcaggga ttaaggtaaa gcaactgtgt aaactcctca ggggagctaa     3420

agcactaaca gacatagtac cactgactga agaagcagaa ttagagttgg cagagaacag     3480

ggagattcta aaaacccctg tgcatggagt atattatgac ccatcaaaag acttagtagc     3540

agaagtacag aaacaagggc aggaccaatg gacatatcaa atttatcaag agccatttaa     3600

aaatctaaaa acaggaaaat atgccagaaa aaggtctgct cacactaatg atgtaagaca     3660

attaacagaa gtggtgcaaa aaatagccac agaaagcata gtaatatggg gaaagacccc     3720

taaatttaga ctacccatac aaagagaaac atgggaaaca tggtggatgg agtattggca     3780

ggctacctgg attcctgaat gggagtttgt taatacccct cctctagtaa aattatggta     3840

ccaattagaa aaagacccca tagtaggagc agagactttc tatgtagatg gggcagctag     3900

tagggagact aagctaggaa aagcagggta tgtcactgac agaggaagac aaaaggtagt     3960

ttccctaact gagacaacaa atcaaaagac tgaattacat gcgatccatt tagccttgca     4020

ggattcagga tcagaagtaa atatagtaac agactcacaa tatgcattag gaatcattca     4080

ggcacaacca gacaggagtg aatcagaagt agtcaaccaa ataatagagg agctaataaa     4140

aaaggaaaaa gtctacctgt catgggtacc agcacacaag gggattggag gaaatgaaca     4200

agtagataaa ttagtcagtt caggaatcag gaaggtgcta tttttagatg ggatagataa     4260

ggctcaagaa gaacatgaaa gatatcacag caattggaga acaatggcta gtgattttaa     4320

tttgccacct atagtagcaa aggaaatagt agccaactgt gataaatgtc aactaaaagg     4380

ggaagctatg catggacaag tagactgtag tccagggata tggcaattag attgcacaca     4440

tctagaagga aaagtcatcc tggtagcagt ccacgtggcc agtggatata tagaagcaga     4500

agttatccca gcagaaacag gacaggagac agcatacttt ctgctaaaat tagcaggaag     4560

atggccagta aaagtaatac acacagacaa cggtagcaat ttcaccagcg ctgcagttaa     4620

agcagcctgt tggtgggcca atgtccgaca ggaatttggg atcccctaca atccccaaag     4680

tcaaggagta gtagaatcta tgaataagga attaaagaaa atcatagggc aggtaagaga     4740

gcaagctgaa caccttaaga cagcagtaca aatggcagta ttcattcaca attttaaaag     4800

aaaagggggg attggggggt acagtgcagg ggaaagaata atagacataa tagcaacaga     4860

catacaaact aaagaattac aaaaacaaat tacaaaaatt caaaattttc gggtttatta     4920

cagggacagc agagacccaa tttggaaagg accagcaaaa ctactctgga aaggtgaagg     4980

ggcagtagta atacaagaca atagtgatat aaaagtagta ccaagaagaa aagcaaagat     5040

cattagggat tatggaaaac agatggcagg tgatgattgt gtggcaggta gacaggatga     5100

ggattagaac atggaacagt ttagtaaaac atcatatgta tatctcaaag aaagctaaaa     5160

agtggtttta tagacatcat tatgaaagcc agcatccaaa ggtaagttca gaagtacata     5220

tcccactagg agaggctaga ttagtaataa gaacatattg gggtctgcag acaggagaaa     5280

aggactggca attgggtcat ggagtctcca tagaatggag gcagagaaaa tatagcacac     5340

aaatagatcc tgacctagca gaccaactga ttcatctaca atattttgac tgtttttcag     5400

actctgccat aaggaaagcc atattaggac aagtagttag acgtaggtgt gaatatccat     5460

caggacataa caaggtagga tccctacaat atttggcact gaaagcatta acaacaccaa     5520

aaaggataag gccacctctg cctagtgtta agaaattaac agaagataga tggaacaagc     5580

cccagaagat caggggccac agagagaacc ctacaatgaa tggacattag aactgttaga     5640

ggagcttaaa aatgaagctg ttagacattt tcctaggccc tggctccatg gcttaggaca     5700

gtacatctat aacaattatg gggatacttg ggaaggggtt gaagctataa taagaatttt     5760

gcaacaacta ctgtttgttc atttcagaat tgggtgtcaa catagcagaa taggcattat     5820

accagggaga agaggcagga atggagccgg tagatcctaa cctagagccc tggaatcatc     5880

cgggaagtca gcctacaact gcttgtagca agtgttactg taaaatatgt tgctggcatt     5940

gccaactatg ctttctgaaa aaaggcttag gcatctccta tggcaggaag aagcggaagc     6000

accgacgagg aactcctcag agcagtaagg atcatcaaaa tcctatacca gagcagtaag     6060

taanaagtat atgtaatgtc acctttggaa attagtgcaa tagtaggact gatagtagcg     6120

ctaatcttag caatagtagt gtggactata gtagctatag aatttaagaa aatactaagg     6180

caaagaaaaa tagacaggtt agttaagaga ataagagaaa gagcagaaga cagtggaaat     6240

gagagtgaag gagacacaga tgaattggcc aaacttgtgg aaatggggga ctttgatcct     6300

tgggttggtg ataatttgta gtgcctcaga caacttgtgg gttacagttt attatggggt     6360

tcctgtgtgg agagatgcag ataccaccct attttgtgca tcagatgcca aagcacatga     6420

gacagaagtg cacaatgtct gggccacaca tgcctgtgta cccacagacc ccaacccaca     6480

agaaatacac ctggaaaatg taacagaaaa ttttaacatg tggaaaaata acatggtaga     6540

gcagatgcag gaggatgtaa tcagtttatg ggatcaaagt ctaaagccat gtgtaaagtt     6600

aactcctctc tgcgttactt taaattgtac caatgctaat ttgaccaatg tcaataacac     6660

aaccaatgtc tctaacataa taggaaatat aacagatgaa gtaagaaact gttcttttaa     6720

tatgaccaca gaactaagag ataagaagca gaaggtccat gcactttttt ataagcttga     6780

tatagtacaa attganaata aaatagtagt gagtataggt taataaattg taatacttca     6840

gtcattaagc aggcttgtcc aaagatatcc tttgatccaa ttcctataca ttattgtact     6900

ccagctggtt atgcgatttt aaagtgtaat gataagaatt tcaatgggac agggccatgt     6960

aaaaatgtca gctcagtaca atgcacacat ggaattaagc cagtggtatc aactcaattg     7020

ctgttaaatg gcagtctagc agaagaagag ataataatca gatctgaaaa tctcacaaac     7080

aatgccaaaa ccataatagt gcaccttaat aaatctgtag aaatcaattg taccagaccc     7140

tccaacaata caagaacaag tataactata ggaccaggac aagtattcta tagaacagga     7200

gacataatag gagatataag aaaagcatat tgtgagatta atggaacaaa atggaatgaa     7260

gttttaaaac aggtaactga aaaattaaaa gagcacttta ataataagac aataatcttt     7320

caaccaccct caggaggaga tctagaaatt acaatgcatc attttaattg tagaggggaa     7380

tttttctatt gcaatacaac anaactgttt aataatactt gcntangaaa tnnaancagg     7440

aggggtgtaa tggcactatc acacttccat gcaagataaa gcaaattata aacatgtggc     7500

agggagcagg acaagcaatg tatgctcctc ccatcagtgg aanaattaat tgtgtatcaa     7560

atattacagg aatactattg acaagagatg gtggtgctaa taatacgaat aacgagacct     7620

tcagacctgg aggaggaaat ataaaggaca attggagaag tgaattatat aaatataaag     7680

tagtacaaat tgaaccacta ggaatagcac ccaccagggc aaagagaaga gtggtggaga     7740

gagaaaaaag agcagtggga ataggagcta tgatctttgg gttcttagga gcagcaggaa     7800

gcactatggg cgcggcgtca ataacgctga cggtacaggc cagacaatta ttgtctggta     7860

tagtgcaaca gcaaagcaat ttgctgaggg ctatagaggc gcagcagcat ctgttgcaac     7920

tcacagtctg gggcattaaa cagctccagg caagagtcct ggctgtggaa agatacctaa     7980

aggatcaaaa gttcctagga ctttggggct gctctggaaa aatcatctgc accactgctg     8040

tgccctggaa ctccacttgg agtaataaat cttttgaaga gatttggaac aacatgacat     8100

ggatagaatg ggagagagaa attagcaatt acacaaacca aatatatgag atacttacag     8160

aatcgcagaa ccagcaggac aggaatgaaa aggatttgtt agaattggat aaatgggcaa     8220

gtctgtggaa ttggtttgac ataacaaatt ggctgtggta tataaaaata tttataatga     8280

tagtaggagg tttaataggt ttaagaataa tttttgctgt gctttctata gtaaatagag     8340

ttaggcaggg atactcacct ttgtctttcc agacccctac ccatcatcag agggaacccg     8400

acagacccga aagaatcgaa gaaggaggtg gcgagcaagg cagagacaga tccgtgcgat     8460

tagtgagcgg attcttagca cttgcctggg acgatctacg gagcctgtgc ctcttcagct     8520

accaccgctt gagagacttc atcttgattg cagcgaggac tgtggaactt ctgggacaca     8580

gcagtctcaa gggactgaga cgggggtggg aaggcctcaa atatctgggg aatcttctgt     8640

tatattgggg ccaggaacta aaaattagtg ctatttcttt gcttgatgct acagcaatag     8700

cagtagcggg gtggacagat agggttatag aagtagcaca aggagcttgg agagccattc     8760

tccacatacc tagaagaatc agacagggct tagaaagggc tttgctataa catgggaggc     8820

aagtggtcaa aaagtagcat agtgggatgg cctcaggtca gggaaagaat aaagcaaact     8880

cctccagcag cagaaggagt aggagcagta tctcaagatc tagataaaca tggagcagta     8940

acaagtagta atatgaataa tgctgattgt gtctggctga gagcacaaga ggaagaggag     9000

gtaggctttc cagtcaggcc gcaggtacct ctaagaccaa tgacttataa gggagctttt     9060

gatcttagct tctttttaaa agaaaagggg ggactggatg ggctaattta ctccaagaaa     9120

agacaagaga tccttgactt atgggtctat aatacacaag gcttcttccc tgattggcaa     9180

aactacacac cagggccagg gatcagatac ccactgtgtt ttggatggtg cttcaagcta     9240

gtaccagttg acccaagaga agtagaggag gacaacaaag gagaaaacaa ctgcctgtta     9300

caccccatga gccagcatgg aatagaggac gaagaaagag aagtgctgat gtggaagttt     9360

gacagtgccc tagcacgaaa acacatagcc cgagaactgc atccagagta ctataaagac     9420

tgctgacaaa gaagtttcta actaggactt ccgctgggga ctttccaggg gaggtgtggc     9480

cggggcggag ttggggagtg gctaaccctc agatgctgca taaaagcagc cgcttttcgc     9540

ttgtactggg tctctcttgt tagaccaggt cgagcccggg agctctctgg ctagcaaggg     9600

aacccactgc ttaaagcctc aataaagctt gccttgagtg cttaaagtgg tgtgtgcccg     9660

tctgtgttag gactctggta acta                                            9684


<210> 2
<211> 9186
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (4)..(4)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6)..(9)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (57)..(57)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (101)..(101)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (108)..(109)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (113)..(113)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (115)..(115)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (153)..(153)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (163)..(163)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (174)..(174)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (187)..(187)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (198)..(198)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (200)..(200)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (209)..(209)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (218)..(218)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (242)..(242)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (262)..(263)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (273)..(274)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (282)..(282)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (284)..(284)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (286)..(286)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (293)..(293)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (304)..(305)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (315)..(317)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (340)..(340)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (350)..(350)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (376)..(376)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (383)..(383)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (386)..(389)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (420)..(420)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (505)..(505)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (658)..(658)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (661)..(661)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3511)..(3511)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5935)..(5935)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6625)..(6625)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6654)..(6654)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7407)..(7407)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7414)..(7414)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8540)..(8540)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8771)..(8771)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8773)..(8773)
<223> a, c, t, g, unknown or other

<400> 2
tggntnnnnt aatttactcc aagaaaagac aagagatcct tgatctgtgg gtctatnaca       60

cacaaggatt cttcccagat tggcagaact acacaccagg nccagggnnt agntncccac      120

tgacctttgg gtggtgcttc aaactagtac cantggatcc agnagagata gagnaagcca      180

atgaagnaga gaacaacngn ttattacanc ccatctgnca gcatggaatg gaggacgaag      240

anagagaagt gctggtctgg anntttgaca gtnncctggc antnanacac atngctcgag      300

aganncatcc ggagnnntac aaagactgct gacacagaan ttgctgacan gggactttcc      360

gctggggact ttccgnggga ggngtnnnnt gggaggagtt ggggagtggc tagccctcan      420

atgctgcata taagcagctg cttctcgcct gtactgggtc tctcttgcta gaccagatct      480

gagcctggga gctctctggc tagcngggga acccactgct taagcctcaa taaagcttgc      540

cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc      600

tcagaccact ctagactgtg taaaaatctc tagcagtggc gcccgaacag ggacttgnag      660

ntaataggga ctcgaaagcg aaagttccag agaagatctc tcgacgcagg gactcggctt      720

gctgaggtgc acacagcaag aggcgagagc ggcgactggt gagtacgcca aattttgact      780

agcggaggct agaaggagag agatgggtgc gagagcgtca gtattaagtg ggggaaaatt      840

agatgcatgg gagaaaattc ggttaaggcc agggggaaag aaaaaatata gactaaaaca      900

tctagtatgg gcaagcaggg agctggaaag attcgcactt aaccctggcc ttttagaaac      960

agcagaagga tgtcaacaaa taatggaaca gttacaatca actctcaaga caggatcaga     1020

agaacttaaa tcattattta atacaatagc aaccctttgg tgcgtacatc aaaggataga     1080

cataaaagac accaaggaag ccttagataa aatagaggaa atacaaaata agagcaagca     1140

aaagacacag caggcagcag ctgccacagg aagcagcagc caaaattacc ctatagtgca     1200

aaatgcacaa gggcaaatga cacatcagac catgtcacct aggactttga atgcatgggt     1260

gaaggtaata gaagaaaagg ctttcagccc agaagtaata cccatgtttt cagcattatc     1320

agagggagcc accccacaag atttaaatat gatgctaaac atagtggggg gacaccaggc     1380

agcaatgcag atgttaaaag ataccatcaa tgaggaagct gcagaatggg acagggtaca     1440

tccagtacat gcagggccta ttccaccagg ccagatgagg gaaccaaggg gaagtgacat     1500

agcaggaact actagtaccc ttcaagaaca aataggatgg atgacaagca atccacctat     1560

cccagtggga gaaatctata aaagatggat aatcctggga ttaaataaaa tagtaagaat     1620

gtatagccct gtcagcattt tggacataag acaagggcca aaagaaccct ttagagatta     1680

tgtagatagg ttctttaaaa ctttgagagc tgaacaagct acgcaggagg taaaaaactg     1740

gatgacagaa accttgctgg tccaaaatgc gaatccagac tgtaagtcca ttttaagagc     1800

attaggacca ggggctacat tagaagaaat gatgacagca tgtcagggag tgggaggacc     1860

tggccataaa gcaagggttt tggctgaggc aatgagtcaa gtacaacagg ccaacataat     1920

gatgcagaga ggcaatttta ggggccagag aacaataaag tgtttcaact gtggcaaaga     1980

aggacaccta gccagaaatt gcaaggcccc taggaaaagg ggctgttgga aatgtgggaa     2040

ggaaggacac caaatgaaag actgtactga gagacaggct aattttttag ggaaaatttg     2100

gccttccagc aaggggaggc caggaaattt tcctcagagc agaccggaac caacagcccc     2160

accagcagag agctttggga tgggggaaga gataacctcc tctccgaagc aggaaccgag     2220

ggacaaggga ctatatcctc ctttaacttc cctcaaatca ctctttggca acgaccctta     2280

gtcacagtaa gaataggggg acagctaata gaagccctat tagacacagg agcagatgat     2340

acagtattag aagaaataaa tttaccagga aaatggaaac caaaaatgat agggggaatt     2400

ggaggtttta tcaaagtaag acagtatgat cagatactta tagaaatttg tggaaaaaag     2460

gccataggta cagtattagt aggacctaca cctgtcaaca taattggacg aaatatgttg     2520

actcagattg gttgtacttt aaattttcca attagtccta ttgaaactgt gccagtaaaa     2580

ttaaagccag gaatggatgg cccaaaggtt aaacaatggc cattgacaga agaaaaaata     2640

aaagcattaa cagaaatttg tacagagatg gaaaaggaag gaaaaatttc aaaaattggg     2700

cctgaaaatc catacaatac tccagtattt gccataaaga aaaaagatag tactaaatgg     2760

agaaaattag tagatttcag agaactcaat aagagaactc aagacttctg ggaggtccaa     2820

ttaggaatac ctcatcccgc gggattaaaa aagaaaaaat cagtaacagt actagatgtg     2880

ggggatgcat atttttcagt tcccttagat aaagacttta gaaagtatac tgcattcact     2940

atacctagtg taaataatga gacaccaggg attagatatc agtacaatgt gcttccacag     3000

ggatggaaag gatcaccagc aatatttcag gcaagcatga caaaaatctt agagcccttt     3060

agaacaaaaa atccagagat agtgatctac caatatatgg atgatttata tgtaggatct     3120

gacttagaga tagggcagca tagagcaaaa atagaggagt tgagagaaca tctactgaga     3180

tggggattta ccacaccaga caaaaaacat cagaaagaac ctccatttct ttggatggga     3240

tatgaactcc atcctgacaa atggacagtc cagcctatac agctgccaga aaaagacagc     3300

tggactgtca atgatataca gaaattagtg ggaaaactaa attgggcaag tcagatttat     3360

gcaggaatta aagtaaagca actgtgtaaa ctcctcaggg gagccaaagc actaacagat     3420

atagtaacac tgactgagga agcagaatta gaattggcag agaacaggga aattctaaaa     3480

gaacctgtac atggagtata ttatgaccca ncaaaagact tagtagcaga aatacagaaa     3540

caagggcaag accaatggac atatcaaatt tatcaagagc catttaaaaa tctaaaaaca     3600

ggaaaatatg caaaaaagag gtctgcccac actaatgatg taaaacaatt aacagaggta     3660

gtgcaaaaag tggctacaga aagcatagta atatggggaa agacccctaa atttagacta     3720

cccatacaaa gagaaacatg ggaagcatgg tggatggagt attggcaggc tacctggatt     3780

cctgaatggg agtttgtcaa tacccctcct ctagtaaaat tatggtacca gttagagaaa     3840

gaccccatag taggagcaga aactttctat gtagatgggg cagctaatag ggagactaag     3900

ctaggaaaag cagggtatgt cactgacaga ggaagacaaa aggttgtttc cctaactgag     3960

acaacaaatc aaaagactga attacatgca attcatctag ccttgcagga ttcaggatca     4020

gaagtaaata tagtaacaga ctcacagtat gcattaggaa tcattcaggc acaaccagac     4080

aggagtgaat cagagttagt caatcaaata atagagaagc taatagaaaa ggacaaagtc     4140

tacctgtcat gggtaccagc acacaaaggg attggaggaa atgaacaagt agataaatta     4200

gtcagtaatg gaatcaggaa agtactattt ttagatggca tagataaagc ccaagaagag     4260

catgaaagat atcacagcaa ttggagagca atggctagtg attttaatct gccacctata     4320

gtagcaaaag aaatagtggc cagctgtgat aaatgtcagc taaaagggga agccatgcat     4380

ggacaagtag actgtagtcc aggaatatgg caattagatt gtacacattt agaaggaaaa     4440

attatcctgg tagcagtcca tgtagccagt ggctatatag aagcagaagt tatcccagca     4500

gaaacaggac aggagacagc atactttata ttaaaattag caggaagatg gccagtgaaa     4560

gtaatacaca cagacaatgg cagcaatttc accagtgctg cagtaaaggc agcatgttgg     4620

tgggcaaatg tcacacaaga atttggaatt ccctacaatc cccaaagcca aggagtagtg     4680

gaatctatga ataaagaatt aaagaaaatt atagggcagg tcagggatca agctgaacac     4740

cttaagacag cagtacagat ggcagtattc attcacaatt ttaaaagaaa aggggggatt     4800

ggggggtaca gtgcagggga aagaataata gacataatag catcagatat acaaactaaa     4860

gaactacaaa aacaaattac aaaaattcaa aattttcggg tttattacag ggacagcaga     4920

gaccccattt ggaaaggacc agcaaaacta ctctggaaag gtgaaggggc agtagtaata     4980

caggacaata gtgatataaa ggtagtacca agaagaaaag caaaaatcat taaggattat     5040

ggaaaacaga tggcaggtga tgattgtgtg gcaggtagac aggatgagga ttagaacatg     5100

gaacagttta gtaaaacatc atatgtatat ctctaagaaa gctaagaatt ggttttatag     5160

acatcactat gaaagtaggc atccaaaagt aagttcagaa gtacacatcc cactagggga     5220

tgctagatta gtagtaagaa catattgggg tctgcataca ggagaaagag actggcactt     5280

gggtcatggg gtctccatag aatggaagca gagaagatat agcacacaaa tagatcctga     5340

cctagcagac caactgattc acctgcatta ttttgactgt ttttcagaat ctgccataag     5400

gaaagccata ttaggacaag tagttagacc taggtgtgaa tatcaagcag gacataataa     5460

ggtaggatcg ctacaatatt tggcactgaa agcattagta acaccaacaa ggacaaagcc     5520

acctttgcct agtgttaaga agttagcaga agacagatgg aacaagcccc agaagaccag     5580

gggccacaga gggagccgtt caatgaatgg acactagaac tgttagaaga gcttaaacat     5640

gaagctgtta gacattttcc taggccatgg ctccatggat taggacaaca tatctatgaa     5700

acatatgggg atacttggga aggggttgaa gctataataa gaattttgca acaactactg     5760

tttgttcatt tcagaattgg gtgtcaacat agcagaatag gcattattcg agggagaaga     5820

ggcaggaatg gagccggtag atcctagcct agagccctgg aaccacccgg gaagtcagcc     5880

tacaactgct tgtagcaatt gttactgtaa aaaatgctgc tggcattgcc aattntgctt     5940

tctgaacaag ggcttaggca tctcctatgg caggaagaag cggagacgcc gacgaggaac     6000

tcctcagagc cgtcaggatc atcaaaatcc tgtaccaaag cagtgagtag taataattag     6060

tatatgtgat gcaatcttta gaaatagctg caatagtagg actagtagta gcattcatag     6120

cagccatagt tgtgtggacc atagtattta tagaatatag gaaaataagg aaacagaaga     6180

aaatagacag gttacttgat agaataagag aaagagcaga agatagtggc aatgagagtg     6240

atggggatac agaggaatta tccactctta tggagatggg gtatgatgat attttggata     6300

atgataattt gtaatgctga aaatttgtgg gtcacggtct actatggggt acctgtgtgg     6360

agagacgcag agaccaccct attttgtgca tcagatgcta aagcatatga tacagaagca     6420

cataatgtct gggctacaca tgcctgtgta cccacagacc ctaacccaca agaaatacat     6480

ttggaaaatg taacagaaaa gtttaacatg tggaaaaata acatggtaga gcagatgcat     6540

gaagatataa ttagtctatg ggaccaaagc ctaaagccat gtgtaaagtt aacccctctc     6600

tgcgttactt tagattgtca taacntcaac agcaacaaca gcaacaatat ctantgacat     6660

gaaaggggaa ataaaaaact gctctttcaa tatgaccaca gaactaagag ataagaaaca     6720

gaaagtgtat gcactttttt atagacttga tgtagtacaa attaatgaaa ataataatag     6780

tcagtatagg ttaataaatt gtaatacctc agccattaca caggcttgtc caaaggtatc     6840

ctttgagcca attcccatac attattgtgc cccagctggt tttgcaattc taaagtgtaa     6900

tgataagaag ttcaatggaa cagggccatg caagaatgtc agcacagtac aatgcacaca     6960

tggaatcaag ccagtagtat caactcaact gctgttaaat ggcagtctag cagaagaaga     7020

ggtagtgatt agatctgaaa atatcacaaa caatgccaaa accataatag tacagttgga     7080

taagcctgta aaaattaatt gtaccagacc tagcaacaat acaagaaaaa gtgtacgtat     7140

aggaccagga caaacattct atgcaacagg tgacataata ggggatataa gacaagcaca     7200

ttgtaatgtc agtagaacag aatggaataa aactttacaa caggtagcta cacaattaag     7260

gaagtacttt aagaatacaa caataatctt tgctaactcc tcaggagggg atttagaaat     7320

tacaacacat agttttaatt gtggaggaga atttttctat tgcaatacat cagaactgtt     7380

taatagcact tggaataata atactancaa cacnaacaac acaaaggcaa atgacactat     7440

aactctccaa tgcagaataa agcaaattgt aaatatgtgg cagagagtag gacaagcaat     7500

gtatgcccct cccatccaag gagtaataag gtgtgaatca aacattacag gactactatt     7560

aacaagagat ggagggaata ataatagtac aaatgagaca ttcaggcctg gaggaggaga     7620

tatgagggac aattggagaa gtgaattata taagtataaa gtagtaaaaa ttgaaccact     7680

aggtgtagca cccacccatg caaaaagaag agtggtggag agagaaaaaa gagcagttgg     7740

actgggagct gtcttccttg ggttcttagg agcagcagga agcactatgg gcgcggcgtc     7800

aataacgctg acggtacagg ccagacaatt attgtctggt atagtgcaac agcagagcaa     7860

tttgctgagg gctatagagg ctcaacaaca tctgttgaaa ctcacggtct ggggcattaa     7920

acagctccag gcaagagtcc tggctctgga aagataccta aaggatcaac agctcctagg     7980

aatttggggc tgctctggaa aactcatctg caccactact gtgccctgga actctagttg     8040

gagtaataaa acttataatg acatatggga taacatgacc tggctgcaat gggataaaga     8100

aattagcaat tacacagaca taatatataa tctaattgaa gaatcgcaga accagcagga     8160

aaagaatgaa caagacttat tggcattgga caagtgggca agtctgtgga attggtttga     8220

cataacaaat tggctatggt atataaaaat atttataatg atagtaggag gtttgatagg     8280

tttaagaata gtttttgctg tgcttactat aataaataga gttaggcagg gatactcacc     8340

tttgtcattc cagaccctta cccaccacca gagggaaccc gacaggcccg aaagaatcga     8400

agaaggaggt ggcgagcaag acagagacag atccgtgcga ttagtgagcg gattcttagc     8460

acttgcctgg gacgatctgc ggagcctgtg cctcttcagc taccaccgat tgagagactt     8520

tgtcttgatt gcagcgaggn ctgtggaact tctgggacac agcagtctca agggactgag     8580

actggggtgg gaagccctca aatatctggg gaatcttcta tcatactggg gtcaggaact     8640

aaagaatagt gctattaatt tgcttgatac aatagcaata gcagtagcta actggacaga     8700

tagagttata gaaataggac aaagagctgg tagagctatt cttaacatac ctagaagaat     8760

cagacagggc ntngaaaggg ctttgctata acatgggtgg caagtggtca aaaagcagca     8820

tagtgggatg gcctcaggtt agggaaagaa taagacaaac ccctccagca gcaacaggag     8880

taggagcagc atctcaagat ttagatagac atggagcaat cacaagcagt aatacagcag     8940

ctactaatgc tgattgtgcc tggctggaag cacaagagga agaggaggta ggctttccag     9000

tcaggccgca ggtacctttg agaccaatga cttataaggc agctgtcgat ctcagccact     9060

ttttaaaaga aaagggggga ctggatgggt taatttactc caagaaaaga caagagatcc     9120

ttgatctgtg ggtctatcac acacaaggat tcttcccaga ttggcagaac tacacaccag     9180

ggccag                                                                9186


<210> 3
<211> 9595
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (399)..(399)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (550)..(550)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (575)..(575)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (615)..(615)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6633)..(6633)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6767)..(6767)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7401)..(7401)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7406)..(7406)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7411)..(7411)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8665)..(8665)
<223> a, c, t, g, unknown or other

<400> 3
tggatgggtt aatttactcc aggaaaagac aagaaatcct tgatctgtgg gtctacaaca       60

cacaaggcta cttccctgat tggcagaatt acacaccagg gccagggatc agattcccac      120

taacatttgg atggtgcttc aagctagtac cagttgatcc agatgaagta gaaaaggcta      180

ctgagggaga gaacaacagc ctattacacc ctataagcca acatggaatg gatgatgaag      240

aaagagaaac attaatgtgg aagtttgaca gccgcctggc acttacacac agagcccgag      300

agctgcatcc ggagttctac aaagactgct gacacagaag ttgctgacag ggactttccg      360

ctggggactt tccaggggag gtgtggtttg ggcggagtng gggagtggct aaccctcaga      420

tgctgcatat aagcagctgc ttttcgcctg tactgggtct ctcttgttag accagatcga      480

gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct      540

tgagtgcttn aagtagtgtg tgcccgtctg ttgtntgact ctggtaacta gagatccctc      600

agaccactct agacngtgta aaaatctcta gcagtggcgc ccgaacaggg actcgaaagc      660

gaaagttcca gagaagttct ctcgacgcag gactcggctt gctgaggtgc acacagcaag      720

aggcgagagc ggcgactggt gagtacgcca atttttgact agcggaggct agaaggagag      780

agatgggtgc gagagcgtca gtattaagtg ggggaaaatt agatgcatgg gagaaaattc      840

ggttaaggcc agggggaaag aaaaaatata gactgaaaca tctagtatgg gcaagcaggg      900

agctggaaag atttgcactt aaccctagcc ttttagaaac agcagaagga tgtcaacaaa      960

taatggaaca gttacaacca gctctcaaga caggaacaga agaacttaga tcattattta     1020

atacagtagc aaccctctat tgtgtacatc aacggataga tgtaaaagac accaaggaag     1080

ctctagataa aatagaggaa atacaaaata agagcaagca aaagacacaa caggcagcag     1140

ctgacacagg aaacagcagc aaggtcagcc aaaattaccc tatagtgcaa aatgcacaag     1200

ggcaaatgat acaccagtcc ttgtcaccta ggactttgaa tgcatgggta aaagtaatag     1260

aagaaaaggc tttcagccca gaagtaatac ccatgttctc agcattatca gaaggagcca     1320

ccccacaaga tttaaatatg atgctgaaca tagtgggggg acaccaggca gctatgcaaa     1380

tgttaaaaga taccatcaat gaggaagctg cagaatggga caggttacat ccagtacatg     1440

cagggcctat tccaccaggc cagatgagag aaccaagggg aagtgacata gcaggaacta     1500

ctagtacccc tcaagaacaa ataggatgga tgacaggcaa cccacctatc ccagtgggag     1560

acatctataa aagatggata atcctgggat taaataaaat agtaagaatg tatagccctg     1620

ttagcatttt ggatataaaa caagggccaa aagaaccctt cagagattat gtagataggt     1680

tctttaaaac tctcagagct gagcaagcta cacaggaggt aaaaggttgg atgacagaaa     1740

cattactggt ccaaaatgca aatccagatt gtaagtccat tttaagagca ttaggagcag     1800

gggctacatt agaagaaatg atgacagcat gccagggagt gggaggaccc ggccataaag     1860

caagggtttt ggctgaggca atgagtcaag tacaacatac aaacataatg atgcagagag     1920

gcaattttag gggccagaaa aggattaagt gtttcaactg tggcaaagaa ggacacctag     1980

ccagaaattg cagggcccct aggaaaaagg gctgttggaa atgtgggaag gagggacacc     2040

aaatgaaaga ctgcactgaa agacaggcta attttttagg gaaaatttgg ccttccagca     2100

aggggaggcc aggaaatttt cctcagagca gaccggagcc aacagcccca ccagcagaga     2160

tctttgggat gggggaagag atagcctccc ctccgaagca ggagcagaaa gacagggaac     2220

aggccccacc tttagtttcc ctcaaatcac tctttggcaa cgaccccttg tcacagtaag     2280

aataggggga cagctaaaag aagctctatt agatacagga gcagatgata cagtattaga     2340

agacataaat ttgccaggaa aatggaaacc aaaaatgata gggggaattg gaggtttcat     2400

caaggtaaaa cagtatgatc agatacttat agaaatttgt ggaaaaaagg ctataggtac     2460

agtattagta ggacctacac ctgtcaacat aattggaaga aatatgttga cccagattgg     2520

ttgtacttta aatttcccaa ttagtcctat tgagactgta ccagtaaaat taaagccagg     2580

aatggatggc ccaaaggtta aacaatggcc attgacagaa gaaaaaataa aagcattaac     2640

agaaatttgt acagagatgg aaaaggaagg aaaaatttca aaaattgggc ctgaaaatcc     2700

atacaatact ccaatatttg ctataaagaa aaaagatagc actaaatgga ggaaattagt     2760

agatttcaga gagctcaata aaagaactca agacttttgg gaagttcaat taggaatacc     2820

gcatccagcg ggcctaaaaa agaaaaaatc agtaacagta ctagatgtgg gggacgcata     2880

tttttcagtt cctttagatg aaagctttag aaagtatact gcattcacca tacctagtac     2940

aaacaatgag acaccaggaa tcaggtatca gtacaatgtg cttccacagg gatggaaagg     3000

atcaccggca atattccaga gtagcatgac aaaaatctta gagcccttta gatcaaaaaa     3060

tccagaaata attatctatc aatacatgga tgacttgtat gtaggatctg atttagaaat     3120

agggcagcat agaacaaaaa tagaagagtt aagagctcat ctattgagct ggggatttac     3180

tacaccagac aaaaagcatc agaaagaacc tccatttctt tggatgggat atgaactcca     3240

tcctgacaag tggacagtcc agcctataga gctgccagaa aaagaaagct ggactgtcaa     3300

tgatatacag aaattagtgg gaaaactaaa ttgggcaagt caaatttatg cagggattaa     3360

agtaaagcaa ttgtgtaaac tcctcagggg agccaaagca ctaacagata tagtaacatt     3420

gactgaggaa gcagaattag aattggcaga gaacagggag attctaaaag accctgtgca     3480

tggagtatat tatgacccat caaaagactt aatagcagaa atacagaaac aagggcaaga     3540

ccaatggaca tatcaaattt atcaagagcc atttaaaaat ctaaaaacag gaaaatatgc     3600

aagaaaaagg tctgctcaca ctaatgatgt aaaacaatta gcagaagtgg tgcaaaaggt     3660

ggtcatggaa agcatagtaa tatggggaaa gactcctaaa tttaaactac ccatacaaaa     3720

agaaacatgg gaaacatggt ggatggacta ttggcaggct acctggattc ctgaatggga     3780

gtttgtcaat acccctcctc tagtaaaatt atggtaccag ttagagaaag accccatagt     3840

aggagcagag actttctatg tagatggggc agccaatagg gagactaagc taggaaaagc     3900

agggtatgtc actgacagag gaagacaaaa ggttgtttcc ctaactgaga caacaaatca     3960

aaagactgaa ctacatgcaa tccatctagc cttgcaggat tcaggatcag aagtaaacat     4020

agtaacagac tcacagtatg cattaggaat cattcaggca caaccagaca ggagtgaatc     4080

agagttagtc aatcaaataa tagagaagct aataggaaag gacaaagtct acctgtcatg     4140

ggtaccagca cacaaaggaa ttggaggaaa tgaacaagta gataaattag tcagttctgg     4200

aatcaggaag gtgctatttt tagatgggat agataaagct caagaagaac atgaaagata     4260

tcacagcaat tggagagcaa tggctagtga ttttaatctg ccacctatag tagcaaagga     4320

aatagtagcc agctgtgata aatgtcagct aaaaggggaa gccatgcatg gacaagtaga     4380

ctgcagtcca gggatatggc aattagattg cacacatcta gaaggaaaag taattctggt     4440

agcagtccat gtagccagtg gctatataga agcagaagtt atcccagcag aaacaggaca     4500

ggagacagca tactttctac taaaattagc aggaagatgg ccagtaaaag tagtacacac     4560

agacaatggc agcaatttca ccagcgctgc atttaaagca gcctgttggt gggcaaatat     4620

ccaacaggaa tttgggattc cctacaatcc ccaaagtcaa ggagtagtgg aatctatgaa     4680

taaggaatta aagaaaatca tagggcaggt aagagagcaa gctgaacacc ttaaaacagc     4740

agtacaaatg gcagtattca ttcacaattt taaaagaaaa ggggggattg gggggtacag     4800

tgcaggggaa agaataatag acataatagc aacagacata caaactaaag aattacaaaa     4860

acaaattaca aaaattcaaa attttcgggt ttattacagg gacagcagag atccaatttg     4920

gaaaggacca gcaaaactac tctggaaagg tgaaggggca gtagtaatac aggacaatag     4980

tgatataaag gtagtaccaa gaagaaaagc aaagatcatt agggattatg gaaaacagat     5040

ggcaggtgat gattgtgtgg caggtagaca ggatgaggat tagaacatgg aacagtttag     5100

taaaacatca tatgtatgtc tcaaagaaag ctaaagattg gttttataga catcactatg     5160

aaagcaggca tccaaaagta agttcagaag tacacatccc actaggggat gctagattag     5220

tagtaagaac atattggggt ctgcatacag gagaaaaaga ctggcacttg ggtcatgggg     5280

tctccataga atggaggcta aaaagatata gcacacaaat agatcctgac ctggcagacc     5340

aactaattca tctgcattat tttgactgtt tttcagactc tgccataagg aaagccatat     5400

taggacaagt agttagccct aggtgtgaat atcaaacagg acataacaag gtaggatctc     5460

tacaatattt agcactgaaa gcattagtaa caccaacaaa gacaaagcca cctttgccta     5520

gtgttaggaa attaacagag gatagatgga acaagcccca gaagaccagg ggccccagag     5580

ggagccatac aatgaatgga tgttagaact gttagaagat cttaagcatg aagctgttag     5640

acattttcct aggccatggc ttcatggatt aggacaacat atctataaca cctatgggga     5700

tacttgggaa ggagttgaag ctataataag aattttgcaa caactactgt ttgttcattt     5760

cagaattggg tgccaacata gcagaatagg cattattcga gggagaagag tcagggatgg     5820

atccggtaga tcctaaccta gagccctgga accatccggg aagtcagcct acaactcctt     5880

gtagcaagtg ttactgtaaa aagtgttgct atcattgcca agtttgcttt ctgaacaaag     5940

gcttaggcat ctcctatggc aggaagaagc ggagacagcg acgaggaact cctcaaagca     6000

gtaaggatca tcaaaatcct ataccaaagc agtaagtatt agtaattagt atatgtaatg     6060

cctcctttgg aaatctgtgc aatagtagga ctgatagtag cgctaatcct agcaatagtt     6120

gtgtggacta tagtaggtat agaatataag aaattgctaa agcaaagaaa aatagacagg     6180

ttaattgaga gaataagaga aagagcagaa gacagtggca atgagagtga tggggataca     6240

gaggaattgt caacacttat tgagatgggg aactatgatc ttggggatga taataatctg     6300

tagtgctgca gaaaacttgt gggttactgt ctactatggg gtacctgtgt ggaaagatgc     6360

agagaccacc ttattttgtg catcagatgc taaagcatat gagacagaag tgcataatgt     6420

ctgggctaca catgcctgtg tacccacaga ccccaaccca caagaaatac atttggaaaa     6480

tgtgacagaa gagtttaaca tgtggaaaaa taacatggta gagcagatgc atacagatat     6540

aatcagtcta tgggaccaaa gcctaaagcc atgtgtaaag ttaacccctc tctgcgttac     6600

tttaaattgt agcaatgtca acatcaacaa cancaacaca atatcaccaa taacatgaaa     6660

gaagaaataa aaaactgctc tttcaatatg accacagaac taagggataa gaaacagaaa     6720

gtatattcac ttttttatag acttgatgta gtacaaatta atgaaantaa tagtaatagt     6780

agtgagtata gattaataaa ttgtaatacc tcagccatta cacaggcttg tccaaaggta     6840

tcctttgagc caattcccat acattattgt gccccagctg gttttgcgat cctaaagtgt     6900

aaggataagg agttcaatgg aacagggcca tgcaagaatg tcagcacagt acaatgcaca     6960

catggaatca agccagtagt atcaactcaa ctgctgttaa atggcagtct agcagaagaa     7020

gaggtaataa ttagatctga aaatatcaca aacaatgcca aaaccataat agtacaactt     7080

accaagcctg taaaaattaa ttgtaccaga cctaacaaca atacaagaaa aagtatacgt     7140

ataggaccag gacaagcatt ctatgcaaca ggtgacataa taggggatat aagacaagca     7200

cattgtaatg tcagtagatc agaatggaat aaaactttac aaaaggtagc taaacaatta     7260

agaaaatact ttaagaacaa aacaataatc tttactaact cctcaggagg ggatctagaa     7320

attacaacac atagttttaa ttgtggagga gaatttttct attgtaatac atcaggcctg     7380

tttaatagca cttggaataa naacantaac nagacaaata gcacggagtc aaatgacact     7440

ataactctcc catgcagaat aaagcaaatt ataaatatgt ggcagagagc aggacaagca     7500

atgtatgccc ctcccatcca aggagtaata aggtgtgaat caaacattac aggactacta     7560

ttaacaagag atggtgggaa taataacagt acaaatgaaa ccttcagacc tggaggagga     7620

gatatgaggg acaattggag aagtgaatta tataagtata aagtagtaaa aattgaacca     7680

ctaggagtag cacccaccag ggcaaagaga agagtggtgg agagagaaaa aagagcagtt     7740

ggaataggag ctgtcttcct tgggttctta ggagcagcag gaagcactat gggcgcggcg     7800

tcaataacgc tgacggtaca ggccagacaa ttattgtctg gcatagtgca acagcaaagc     7860

aatttgctga gggctataga ggctcaacag catctgttga aactcacggt ctggggcatt     7920

aaacagctcc aggcaagagt cctggctgtg gaaagatacc taaaggatca acagctccta     7980

ggaatttggg gctgctctgg aaaactcatc tgcaccacta atgtgccctg gaactctagt     8040

tggagtaata aatctcagaa tgagatatgg gataacatga cctggctgca atgggataaa     8100

gaaattagca attacacaca cataatatat aatctaattg aagaatcgca gaaccagcag     8160

gaaaagaatg aacaagactt attggcattg gacaagtggg caaatctgtg gaattggttt     8220

gacatatcaa actggctgtg gtatataaaa atatttataa tgatagtagg aggcttaata     8280

ggattaagaa tagtttttgc tgtgctttct ataataaata gagttaggca gggatactca     8340

cctttgtcgt ttcagaccca taccccaaac ccaaggggtc tcgacaggcc cggaagaatc     8400

gaagaagaag gtggagagca aggcagagac agatcgattc gattagtgag cggattctta     8460

gcacttgcct gggacgatct gcggagcctg tgcctcttca gctaccaccg cttgagagac     8520

ttcatcttga ttgcagcgag gactgtggaa cttctgggac acagcagtct caaggggttg     8580

agactggggt gggaaggcct caagtatctg tggaatctcc tgttatattg gggtcgggaa     8640

ctaaaaatta gtgctattaa tttgnttgat accatagcaa tagcagtagc tggctggaca     8700

gatagggtta tagaaatagg acaaagaatt ggtagagcta ttctccacat acctagaaga     8760

atcagacagg gcttagaaag ggctttgcta taacatgggt ggcaagtggt caaaaagtag     8820

catagtggga tggcctgagg ttagggaaag aataagacga actcctccag cagcaacagg     8880

agtaggagca gtatctcaag atttagataa acatggagca gtcacaagca gtaatataaa     8940

tcaccctagt tgcgcctggc tggaagcgca agaggaagag gaggtaggct ttccagtcag     9000

gccacaagta cctctaagac caatgactta caagggagct ctggatctca gccacttttt     9060

aaaagaaaag gggggactgg atgggttaat ttactccagg aaaagacaag aaatccttga     9120

tctgtgggtc taccacacac aaggctactt ccctgattgg cagaattaca caccagggcc     9180

agggatcaga tacccactaa catttggatg gtgcttcaag ctagtaccag ttgatccaga     9240

tgaagtagag aaggctactg agggagagaa caacagccta ttacacccta tatgccaaca     9300

tggaatggat gatgaggaga gagaagtatt aatgtggaag tttgacagcc gcctggcact     9360

aaaacacaga gcccaagagc tgcatccgga gttctacaaa gactgctgac acagaagttg     9420

ctgacaggga ctttccgctg gggactttcc aggggaggtg tggtttgggc ggagttgggg     9480

agtggctaac cctcagatgc tgcatataag cagctgcttt tcgcctgtac tgggtctctc     9540

ttgttagacc agatcgagcc tgggagctct ctggctagcg agggaaccca ctgct          9595


<210> 4
<211> 8980
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (26)..(30)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (34)..(34)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (39)..(39)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (43)..(43)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (48)..(48)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (50)..(50)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (66)..(66)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (104)..(105)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (109)..(109)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (112)..(112)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (130)..(130)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (144)..(144)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (181)..(181)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (186)..(186)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (192)..(192)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (204)..(204)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (264)..(264)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (288)..(288)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (300)..(300)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (306)..(307)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (322)..(323)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (325)..(327)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (338)..(338)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (343)..(343)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (345)..(346)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (351)..(351)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (367)..(367)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (369)..(369)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (389)..(389)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (406)..(406)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (410)..(410)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (422)..(423)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (426)..(426)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (434)..(434)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (436)..(436)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (441)..(441)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (492)..(498)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (504)..(504)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (513)..(513)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (531)..(531)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (533)..(533)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (541)..(563)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (619)..(619)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (823)..(823)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1301)..(1301)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1303)..(1303)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1564)..(1564)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1569)..(1570)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1596)..(1596)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1608)..(1611)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1613)..(1613)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3416)..(3416)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3425)..(3425)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3458)..(3458)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3584)..(3584)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3615)..(3615)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3668)..(3668)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3884)..(3884)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3893)..(3893)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3927)..(3927)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4028)..(4028)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4163)..(4163)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4343)..(4343)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4519)..(4519)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4526)..(4526)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4539)..(4539)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4857)..(4857)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4894)..(4894)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4903)..(4903)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4978)..(4978)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4989)..(4989)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5136)..(5136)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5186)..(5186)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5239)..(5239)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5265)..(5265)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5285)..(5285)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5292)..(5292)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5322)..(5323)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5392)..(5392)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5397)..(5397)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5402)..(5402)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5422)..(5422)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5480)..(5480)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5495)..(5495)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5554)..(5554)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5590)..(5590)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5650)..(5650)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5654)..(5654)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5664)..(5664)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5684)..(5684)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5691)..(5691)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5809)..(5809)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6025)..(6025)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6028)..(6028)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6036)..(6049)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6161)..(6162)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6167)..(6168)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6185)..(6185)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6371)..(6371)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6619)..(6619)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6793)..(6794)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6799)..(6800)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6808)..(6809)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6812)..(6813)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6819)..(6820)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6838)..(6838)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6845)..(6845)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6980)..(6980)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6986)..(6986)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6988)..(6988)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7140)..(7140)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7528)..(7528)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7856)..(7856)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8001)..(8001)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8019)..(8019)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8057)..(8057)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8214)..(8214)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8569)..(8980)
<223> a, c, t, g, unknown or other

<400> 4
ttgaaaagcg aaagtaacag ggactnnnnn gaangcgana gtnccagngn agttctctcg       60

acgcangact cggcttgctg aggtgcacac ggcaagaggc gagnngcgnc gnctggtgag      120

tacgcctaan atttttgact agcngaggct agaaggagag agatgggtgc gagagcgtca      180

ntattnagcg gnggaaaatt agangcttgg gagaaaattc ggttaaggcc agggggaaag      240

aaaaaatata gactgaaaca tttngtatgg gcaagcaggg agctgganaa attctcaatn      300

aacccnngcc ttttagaaac annannngga tgtagacnaa tantnnggca nttacaacca      360

gctctcnana caggaacaga agaacttana tcattatata atacantagn agtcctctac      420

tnngtncatc aaangntaga ngtaaaagac accaaggaag ctctagataa aatagaggaa      480

gaacaaaaca annnnnnnca gaanacacag cangcagcag ctgacacagg nancagcagc      540

nnnnnnnnnn nnnnnnnnnn nnncagtcaa aattacccta tagtgcaaaa tgcacaaggg      600

caaatggtac accaggccnt atcacctagg actttgaatg catgggtcaa agtagtagaa      660

gaaaaggctt tcagcccaga agtaataccc atgtttacag cattatcaga aggagccacc      720

ccacaagact taaatactat gctaaacaca gtggggggac atcaagcagc tatgcaaatg      780

ttaaaagata ccatcaatga ggaagctgca gaatgggaca ggntacatcc agtacatgca      840

gggcctattc caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact      900

agtacccttc aggaacaaat aggatggatg accagcaacc cacctatccc agtgggagaa      960

atctataaaa gatggataat cctgggatta aataaaatag taagaatgta tagccctgtc     1020

agcattttgg acataagaca agggccaaaa gaacccttta gagactatgt agataggttc     1080

tttaaaactc tcagagctga gcaagctaca caggaggtaa aaaactggat gacagacacc     1140

ttgctggtcc aaaatgcgaa cccagattgt aaatccatct tgagagcatt aggaccaggg     1200

gctacattag aagaaatgat gacagcatgt cagggagtgg gaggacccgg ccataaagca     1260

agggttttgg ctgaagcaat gagccaagta caaaatacaa ntncaaacat aatgatgcag     1320

agaggcaatt ttaggggtca aaaaagaatt aagtgtttca actgtggcaa ggaaggacac     1380

ctagccagaa attgcagggc ccctaggaaa aagggctgct ggaaatgtgg gaaggaagga     1440

catcaaatga aagactgcac tgagagacag gctaattttt tagggaaaat ttggccttcc     1500

aacaaaggga ggccaggaaa ttttcctcag agcagaacag agccaacagc cccaccagca     1560

gagnacttnn gaatggggga agagataacc tcctcnctga agcaggannn nancagggaa     1620

ccgtacactc ctgcaatttc cctcaaatca ctctttggca acgacctctt gtcacagtaa     1680

aaatagaagg acagctaaga gaagctctat tagatacagg agcagatgat acagtgttag     1740

aagacataaa tttgccagga aaatggaaac caaaaatgat agggggaatt ggaggtttta     1800

tcaaagtaag acaatatgat cagatagcta tagaaatttg tggaaaaagg gccataggta     1860

cagtattagt aggacctaca cctgtcaaca taattggaag aaatatgttg gttcagcttg     1920

gttgtacttt aaattttcca attagtccta ttgaaactgt accagtaaaa ttaaagccag     1980

gaatggatgg tccaaaggtt aaacaatggc cattgacaga agaaaaaata aaagcattaa     2040

cagaaatttg taaagaaatg gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc     2100

catacaacac tccagtgttt gctataaaga aaaaagacag cactaaatgg agaaaattag     2160

tagatttcag agaactcaat aagagaactc aagacttctg ggaagttcag ttaggaatac     2220

cacatccagc aggattaaaa aagaaaaaat cagtaacagt actagatgtg ggggacgcat     2280

atttttccgt tcccttacat gaagacttca gaaaatatac tgcattcacc atacctagta     2340

taaacaatga gacaccagga attaggtatc agtacaatgt acttccacag ggatggaaag     2400

gatcaccagc aatattccag agtagcatga caaaaatctt agagcccttt agatcaaaaa     2460

atccagagat ggtcatctac caatacatgg atgacttgta tgtaggatct gatttagaaa     2520

taggtcagca tagagcaaaa atagaggaat taagggctca tttattaaga tggggattta     2580

ctacaccaga caaaaaacat cagaaagaac ctccatttct ttggatggga tatgagcttc     2640

atcctgacaa atggacagtc cagcctataa agctgccaga aaaagacagc tggactgtca     2700

atgatataca gaaattagta ggaaagttaa attgggcaag tcagatttat gcagggatta     2760

aagtaaagca actgtgtaaa ctccttagag gaaccaaagc actaacagac atagtaacac     2820

tgactaaaga agcagaatta gaattggaag agaacaggga gattctaaaa aaccctgtac     2880

atggggtata ctatgaccca tcaaaagact taatagcaga aatacagaaa caagggcaag     2940

accaatggac atatcaaatt tatcaagaac catttaaaaa tctaaaaaca gggaaatatg     3000

caaaaaggaa gtccacccac actaatgatg taaaacaatt aacagaagca gtacaaaaaa     3060

tagccataga aagcatagta atatggggaa agactcctaa atttagatta cccatacaaa     3120

aagaaacatg ggagacatgg tggacggagt attggcaggc tacctggatt cctgagtggg     3180

agtttgtcaa tacccctcct ctagtaaaac tatggtacca gttagaaaca gaacccatag     3240

caggagcaga aactttctat gtagatgggg cagctaatag agagactaaa ctaggaaagg     3300

cagggtatgt cactgacaga ggaagacaaa aaattgtctc cctgacggag acaacaaatc     3360

aaaagactga attacatgca atctatttgg ctttacagga ttcaggatta gaagtnaaca     3420

tagtnacaga ttcacagtat gcattaggaa tcattcangc acaaccagat aggagtgaat     3480

cagagttagt caatcaaata atagaaaagt taatagaaaa ggaaagggtc tacctgtcat     3540

gggtaccagc acacaaaggg attggaggaa atgaacaggt aganaaatta gtcagttctg     3600

gaatcaggaa agtgntattt ttagatggga tagataaggc tcaagaagaa catgaaagat     3660

atcacagnaa ttggagagca atggctcatg actttaatct gccacctata gtagcaaaag     3720

aaatagtagc tagctgtgat aaatgtcagc taaaagggga agccatgcat ggacaagtag     3780

actgtagtcc aggaatatgg caactagatt gcacacatct agaaggaaaa gttatcctgg     3840

tagcagtcca tgtagccagt ggctatatag aagcagaagt catnccagca ganacaggac     3900

aggaaacagc atactttata ttaaaantag caggaagatg gccagtaaaa gtaatacata     3960

cagacaatgg gcccaatttc accagtgcaa cagttaaggc agcctgttgg tgggcaggtg     4020

tccaacanga atttgggatt ccctacaatc cccaaagtca aggagtagtg gaatctatga     4080

ataaagaatt aaagaaaatc atagggcagg taagagatca agctgaacac cttaagacag     4140

cagtacaaat ggcagtattc atncacaatt ttaaaagaaa aggggggatt gggggataca     4200

gtgcagggga aagaataata gacataatag caacagatat acaaactaaa gaattacaaa     4260

aacaaattat aaaaattcaa aattttcggg tttattacag ggacagcaga gatccaattt     4320

ggaaaggacc agcaaaactc ctntggaaag gtgaaggggc agtagtaata caagacaata     4380

gtgatataaa ggtagtacca agaagaaaag caaagatcat tagggattat ggaaaacaga     4440

tggcaggtga tgattgtgtg gcaggtagac aggatgagga ttagaacatg gaacagttta     4500

gtaaaacatc atatgtatnt ttcaangaaa gctaaagant ggttctatag acatcactat     4560

gaaagcagac atccaagagt aagttcagaa gtacacatcc cgctagggga ggctagatta     4620

atagtaagaa catattgggg tctgcaccca ggagaaaaag actggcactt gggtcatggg     4680

gtctccatag aatggaggca gaaaaggtat agtacacaaa tagaccctga tctggcagac     4740

catctaatcc atctgtatta ttttgactgt ttttcagaat ctgccataag gaaagccata     4800

ttaggagaaa tagttagtcc taggtgtgaa tatcaagcag gacataacaa ggtaggntct     4860

ctgcaatatt tggcattgaa agcattagta gctncaacaa ggncaaagcc acctttgcct     4920

agtgttagga aattagtaga ggatagatgg aacaagcccc agaagaccag gggccacnga     4980

gggagccana caatgaatgg gtgttagaac tgttagagga gctcaagcag gaagctgtta     5040

gacatttccc taggcagtgg ctacatggcc taggacaaca tatctataat acctatgggg     5100

atacttggga aggagttgaa gctataataa gaactntgca acaactactg tttgtccatt     5160

tcagaattgg gtgccaacat agcagnatag gcattattcg aagaagaaga gtaagggatg     5220

gagccagtag accctaaant agagccctgg aaccatccgg gaagncagcc taaaactgct     5280

tgtancaagt gntattgtaa aaagtgttgc tatcattgcc anntgtgctt tctaaacaaa     5340

ggcttaggca tctcctatgg caggaagaag cggagacccc gacgaggacc tnctcanagc     5400

antaaggatc atcaaaatcc tntaccaaag cagtaagtag tagtaattaa tatatgtaat     5460

gttaccttta gcaatattgn caatagtagg actgntagta gcattaatct tagcaatagt     5520

tgtatggact atagtattta tagaatatag gaanattaag aagcaaagga aaatagactg     5580

gttaatcaan agaataagtg aaagagcaga agacagtggc aatgagagtg atggggacac     5640

agaggaattn tcancacttg tggngatggg gaatcttgat tttngggatg ntaataatgt     5700

gtaaagctac agatttgtgg gtcacagtat actatggagt acctgtgtgg aaagatgcag     5760

ataccaccct attttgtgca tcagatgcta aagcatatga tacagaagng cataatgtct     5820

gggccacaca tgcctgtgta cccacagacc ccaacccaca agaagtaaac ctggaaaatg     5880

taacagaaga ttttaacatg tggaaaaata acatggtaga gcagatgcat gaagatataa     5940

tcagtctatg ggatcaaagc ctaaagccat gtgtaaaatt aacccctctc tgcgtcactt     6000

taaattgtag caatgccaac accantanca ccaatnnnnn nnnnnnnnna gcactgaaga     6060

aataaaaaac tgctcttaca atattaccac agaactaaga gataaaacac agaaagtcta     6120

ttcactgttt tataaacttg atgtagtaca acttaatgaa nnaatannac aagtagtaat     6180

actcngtata gactaataaa ttgtaatacc tcagccatca cacaagcttg tccaaaggta     6240

tcctttgagc caattcctat acattattgt gccccagctg gttttgcgat tctaaagtgt     6300

aaggatccga gattcaatgg aacagggtca tgcaataatg ttagctcagt acaatgtaca     6360

catggaatta ngccagtagc atcaactcaa ctgctgttga atggcagtct agcagaagga     6420

gaggtaatga ttagatctga aaatattaca aacaatgcca aaaacataat agtacagttt     6480

aataaacctg taccaattac ttgtatcaga cccaacaaca atacaagaaa aagtatacgc     6540

tttggaccag gacaagcctt ctatacaaat gacataatag gggatataag acaagcacat     6600

tgtaatatca acaaaacana atggaatgcc actttacaaa aggtagctga acaattaaga     6660

gaacacttcc ctaataaaac aataatcttt actaactcct caggagggga cctagaaatt     6720

acaacacata gttttaattg tggaggagaa tttttctatt gcaatacaac aggcctgttt     6780

aatagcacat ggnngatann ggcaccannc annagaatnn cacggagaca aatggaanta     6840

taacnctccc atgcagaata aaacaaatta taaacatgtg gcagagagta ggacgagcaa     6900

tgtatgcccc tcccattgca ggagtaataa agtgtacatc aaacattaca ggaataatat     6960

tgacaagaga tggtgggaan aacagnanta atgagacctt cagacctgga ggaggagata     7020

tgagggacaa ttggagaagt gaattatata agtataaagt agtaaaaatt gaaccactag     7080

gagtagcacc caccagggca aagagaagag tggtggagag agaaaaaaga gcagttggan     7140

tgggagctgt tttccttggg ttcttgggag cagcaggaag cactatgggc gcggcgtcaa     7200

taacgctgac ggtacaggcc agacaattat tgtctggcat agtgcaacag caaagcaatt     7260

tgctgaaggc tatagaggct caacagcatc tgttgaaact cacagtctgg ggcattaaac     7320

agctccaggc aagagtcctg gctctggaaa gatacctaca ggatcaacag ctcctgggaa     7380

tttggggctg ctctggaaaa ctcatctgcg ccactactgt gccctggaac tctagttgga     7440

gtaataagac tcaggaggag atttggaaca acatgacctg gttgcaatgg gataaagaaa     7500

ttagcaatta cacaaacata atatatangc tacttgaaga atcgcagaac cagcaggaaa     7560

agaatgaaca agacttattg gcattagaca aatgggcaaa tttgtggaat tggtttaaca     7620

taacaaactg gctgtggtat ataagaatat ttataatgat agtaggaggc ttgataggat     7680

taagaatagt tattgctata atttctgtag taaatagagt taggcaggga tactcacctt     7740

tgtcatttca gatccctacc ccaaacccag agggtctcga caggcccgga agaatcgaag     7800

aaggaggtgg agagcaaggc agagacagat cgattcgatt agtgagcgga ttcttngcac     7860

ttgcctggga cgacctacgg agcctgtgcc tcttcagcta ccaccgcttg agagattgca     7920

tcttgattgc agcgaggact gtggaacttc tgggacacag cagtctcaag ggactgagac     7980

tggggtggga aggcctcaaa natctgtgga atcttctgnt atattggggt cgggaattga     8040

agaatagtgc tattagntta cttgatacca tagcagtagc agtagctgag tggacagata     8100

gggttataga aataggacaa agagcttgca gagctattct caacatacct agaagaatca     8160

gacagggctt cgaaagggct ttactataaa atggggggca agtggtcaaa aagnaccata     8220

gtgggatggc ctgctattag ggagagaatg agaagaactc ctccagcagc agaaggaaca     8280

agaccaactc ctccagcagc agaaggagta ggagcagtgt ctcaagattt agctacacat     8340

ggagcagtca caagcagtaa tacagcagct aataatcctg attgcgcctg ggtggaagcg     8400

caagaagagg aggaagtagg cttcccagtc aggccacagg tacctttaag gccaatgacc     8460

ttcaagggag cttttgatct cagccacttt ttaaaagaaa aggggggact ggatgggtta     8520

atttactccc agaaaagaca agacatcctt gatctgtggg tctacaacnn nnnnnnnnnn     8580

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     8640

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     8700

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     8760

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     8820

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     8880

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     8940

nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn                           8980


<210> 5
<211> 9621
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (221)..(221)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (263)..(263)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (325)..(325)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (502)..(502)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5374)..(5374)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6642)..(6642)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7411)..(7411)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7414)..(7414)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7587)..(7587)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8744)..(8744)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9572)..(9572)
<223> a, c, t, g, unknown or other

<400> 5
ctggaagggc taatttactc ccaaaaaaga caagatatcc ttgatctgtg ggtctaccac       60

acacaaggct acttccctga ttggcagaac tacacaccag ggccagggat cagatatcca      120

ctgacctttg gatggtgctt caagctagta ccagttgagc cagagaaggt agaagaggcc      180

aatgaaggag agaacaacag cttgttacac cctatgagcc ngcatgggat ggatgacccg      240

gagaaagaag tgttagtgtg gangtttgac agccgcctag catttcatca catggcccga      300

gagctgcatc cggagtacta caagnactgc tgacatcgag ctttctacaa gggactttcc      360

gctggggact ttccagggag gcgtggcctg ggcgggactg gggagtggcg agccctcaga      420

tgctgcatat aagcagctgc tttttgcctg tactgggtct ctctggttag accagatctg      480

agcctgggag ctctctggct anctagggaa cccactgctt aagcctcaat aaagcttgcc      540

ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac tctggtaact agagatccct      600

cagacccttt tagtcagtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa      660

gcgaaagtga aaccagagga gctctctcga cgcaggactc ggcttgctga agcgcgcacg      720

gcaagaggcg aggggcggcg actggtgagt acgccaaaaa ttttgactag cggaggctag      780

aaggagagag atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga      840

aaaaattcgg ttaaggccag ggggaaagaa aaaatataaa ttaaaacata tagtatgggc      900

aagcagggag ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagaaggctg      960

tagacaaata ctgggacagc tacaaccatc ccttcagaca ggatcagaag aacttagatc     1020

attatataat acagtagcaa ccctctattg tgtgcatcaa aggatagagg taaaagacac     1080

caaggaagct ttagagaaga tagaggaaga gcaaaacaaa agtaagaaaa aagcacagca     1140

agcagcagct gacacaggaa acagcagcca ggtcagccaa aattacccta tagtgcagaa     1200

cctccagggg caaatggtac atcaggccat atcacctaga actttaaatg catgggtaaa     1260

agtagtagaa gagaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga     1320

aggagccacc ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc     1380

catgcaaatg ttaaaagaga ccatcaatga ggaagctgca gaatgggata gattgcatcc     1440

agtgcatgca gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc     1500

aggaactact agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc     1560

agtaggagaa atctataaaa gatggataat cctgggatta aataaaatag taagaatgta     1620

tagccctacc agcattctgg acataagaca aggaccaaag gaacccttta gagactatgt     1680

agaccggttc tataaaactc taagagccga gcaagcttca caggaggtaa aaaattggat     1740

gacagaaacc ttgttggtcc aaaatgcgaa cccagattgt aagactattt taaaagcatt     1800

gggaccagca gctacactag aagaaatgat gacagcatgt cagggagtgg gaggacccgg     1860

ccataaagca agagttttgg ctgaagcaat gagccaagta acaaattcag ctaccataat     1920

gatgcagaga ggcaatttta ggaaccaaag aaagactgtt aagtgtttca attgtggcaa     1980

agaagggcac atagccaaaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg     2040

aaaggaagga caccaaatga aagattgtac tgagagacag gctaattttt tagggaagat     2100

ctggccttcc cacaagggaa ggccagggaa ttttcttcag agcagaccag agccaacagc     2160

cccaccagaa gagagcttca ggtttgggga agagacaaca actccctctc agaagcagga     2220

gccgatagac aaggaactgt atcctttagc ttccctcaga tcactctttg gcaacgaccc     2280

ctcgtcacaa taaagatagg ggggcaacta aaggaagctc tattagatac aggagcagat     2340

gatacagtat tagaagaaat gaatttgcca ggaagatgga aaccaaaaat gataggggga     2400

attggaggtt ttatcaaagt aagacagtat gatcagatac tcatagaaat ctgtggacat     2460

aaagctatag gtacagtatt agtaggacct acacctgtca acataattgg aagaaatctg     2520

ttgactcaga ttggttgcac tttaaatttt cccattagtc ctattgaaac tgtaccagta     2580

aaattaaagc caggaatgga tggcccaaaa gttaaacaat ggccattgac agaagaaaaa     2640

ataaaagcat tagtagaaat ttgtacagaa atggaaaagg aagggaaaat ttcaaaaatt     2700

gggcctgaaa atccatacaa tactccagta tttgccataa agaaaaaaga cagtactaaa     2760

tggagaaaat tagtagattt cagagaactt aataagagaa ctcaagactt ctgggaagtt     2820

caattaggaa taccacatcc cgcagggtta aaaaagaaaa aatcagtaac agtactggat     2880

gtgggtgatg catatttttc agttccctta gataaagact tcaggaagta tactgcattt     2940

accataccta gtataaacaa tgagacacca gggattagat atcagtacaa tgtgcttcca     3000

cagggatgga aaggatcacc agcaatattc caaagtagca tgacaaaaat cttagagcct     3060

tttagaaaac aaaatccaga catagttatc tatcaataca tggatgattt gtatgtagga     3120

tctgacttag aaatagggca gcatagaaca aaaatagagg aactgagaca acatctgttg     3180

aggtggggat ttaccacacc agacaaaaaa catcagaaag aacctccatt cctttggatg     3240

ggttatgaac tccatcctga taaatggaca gtacagccta tagtgctgcc agaaaaagac     3300

agctggactg tcaatgacat acagaagtta gtgggaaaat tgaattgggc aagtcagatt     3360

tatgcaggga ttaaagtaaa gcaattatgt aaactcctta ggggaaccaa agcactaaca     3420

gaagtagtac cactaacaga agaagcagag ctagaactgg cagaaaacag ggagattcta     3480

aaagaaccag tacatggagt gtattatgac ccatcaaaag acttaatagc agaaatacag     3540

aagcaggggc aaggccaatg gacatatcaa atttatcaag agccatttaa aaatctgaaa     3600

acaggaaagt atgcaagaat gaggggtgcc cacactaatg atgtaaaaca attaacagag     3660

gcagtgcaaa aaatagccac agaaagcata gtaatatggg gaaagactcc taaatttaaa     3720

ctacccatac aaaaagaaac atgggaagca tggtggacag agtattggca agccacctgg     3780

attcctgagt gggagtttgt caatacccct cccttagtga aattatggta ccagttagag     3840

aaagaaccca tagtaggagc agaaactttc tatgtagatg gggcagctaa tagggagact     3900

aaattaggaa aagcaggata tgttactgac agaggaagac aaaaagttgt ctccctaact     3960

gacacaacaa atcagaagac tgagttacaa gcaattcatc tagctttgca ggattcggga     4020

ttagaagtaa acatagtaac agactcacaa tatgcattag gaatcattca agcacaacca     4080

gataaaagtg aatcagagtt agtcagtcaa ataatagagc agttaataaa aaaggaaaag     4140

gtctacctgg catgggtacc agcacacaaa ggaattggag gaaatgaaca agtagataaa     4200

ttagtcagtg ctggaatcag gaaagtacta tttttagatg gaatagataa ggcccaagaa     4260

gaacatgaga aatatcacag taattggaga gcaatggcta gtgattttaa cctgccacct     4320

gtagtagcaa aagaaatagt agccagctgt gataaatgtc agctaaaagg agaagccatg     4380

catggacaag tagactgtag tccaggaata tggcaactag attgtacaca tttagaagga     4440

aaagttatcc tggtagcagt tcatgtagcc agtggatata tagaagcaga agttattcca     4500

gcagagacag ggcaggaaac agcatacttt ctcttaaaat tagcaggaag atggccagta     4560

aaaacaatac atacagacaa tggcagcaat ttcaccagta ctacggttaa ggccgcctgt     4620

tggtgggcgg ggatcaagca ggaatttggc attccctaca atccccaaag tcaaggagta     4680

gtagaatcta tgaataaaga attaaagaaa attataggac aggtaagaga tcaggctgaa     4740

catcttaaga cagcagtaca aatggcagta ttcatccaca attttaaaag aaaagggggg     4800

attggggggt acagtgcagg ggaaagaata gtagacataa tagcaacaga catacaaact     4860

aaagaattac aaaaacaaat tacaaaaatt caaaattttc gggtttatta cagggacagc     4920

agagatccac tttggaaagg accagcaaag cttctctgga aaggtgaagg ggcagtagta     4980

atacaagata atagtgacat aaaagtagtg ccaagaagaa aagcaaagat cattagggat     5040

tatggaaaac agatggcagg tgatgattgt gtggcaagta gacaggatga ggattagaac     5100

atggaaaagt ttagtaaaac accatatgta tatttcaagg aaagctaagg gatggtttta     5160

tagacatcac tatgaaagca ctcatccaag aataagttca gaagtacaca tcccactagg     5220

ggatgctaaa ttggtaataa caacatattg gggtctgcat acaggagaaa gagactggca     5280

tttgggtcag ggagtctcca tagaatggag gaaaaagaga tatagcacac aagtagaccc     5340

tgacctagca gaccaactaa ttcatctgta ttantttgat tgtttttcag aatctgctat     5400

aagaaatgcc atattaggac atatagttag tcctaggtgt gaatatcaag caggacataa     5460

caaggtagga tctctacagt acttggcact agcagcatta ataacaccaa aaaagataaa     5520

gccacctttg cctagtgtta cgaaactgac agaggataga tggaacaagc cccagaagac     5580

caagggccac agagggagcc atacaatgaa tggacactag agcttttaga ggagcttaag     5640

agtgaagctg ttagacattt tcctaggata tggctccatg gcttaggaca acatatctat     5700

gaaacttatg gggatacttg ggcaggagtg gaagccataa taagaattct gcaacaactg     5760

ctgtttattc atttcagaat tgggtgtcaa catagcagaa taggcattac tcgacagagg     5820

agagcaagaa atggagccag tagatcctag actagagccc tggaagcatc caggaagtca     5880

gcctaagact gcttgtacca attgctattg taaaaagtgt tgctttcatt gccaagtttg     5940

tttcataaca aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag     6000

agctcctcaa gacagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt     6060

aatgcaatct ttacaaatat tagcaatagt agcattagta gtagcagcaa taatagcaat     6120

agttgtgtgg accatagtat tcatagaata taggaaaata ttaagacaaa gaaaaataga     6180

caggttaatt gatagaataa gagaaagagc agaagacagt ggcaatgaga gtgaagggga     6240

tcaggaagaa ttatcagcac ttgtggagat ggggcaccat gctccttggg atgttgatga     6300

tctgtagtgc tgcagaaaaa ttgtgggtca cagtctatta tggggtacct gtgtggaaag     6360

aagcaaccac cactctattt tgtgcatcag atgctaaagc atatgataca gaggtacata     6420

atgtttgggc cacacatgcc tgtgtaccca cagaccccaa cccacaagaa gtagtattgg     6480

aaaatgtgac agaaaatttt aacatgtgga aaaataacat ggtagaacag atgcatgagg     6540

atataatcag tttatgggat caaagcctaa agccatgtgt aaaattaacc ccactctgtg     6600

ttactttaaa ttgcactgat ttgaagaata ctactaatac tntatactac tagtagtagt     6660

ggggaaaaga tggagaaagg agaaataaaa aactgctctt tcaatatcac cacaagcata     6720

agagataagg tgcagaaaga atatgcactt ttttataaac ttgatgtagt accaatagat     6780

aataataata ctagctatag gttgataagt tgtaacacct cagtcattac acaggcctgt     6840

ccaaaggtat cctttgagcc aattcccata cattattgtg ccccggctgg ttttgcgatt     6900

ctaaagtgta atgataagaa gttcaatgga acaggaccat gtacaaatgt cagcacagta     6960

caatgtacac atggaattag gccagtagta tcaactcaac tgctgttaaa tggcagtcta     7020

gcagaagaag aggtagtaat tagatctgac aatttcacgg acaatgctaa aaccataata     7080

gtacagctga atgaatctgt agaaattaat tgtacaagac ccaacaacaa tacaagaaaa     7140

agtatacata taggaccagg gagagcattt tatacaacag gagaaataat aggagatata     7200

agacaagcac attgtaacat tagtagagca aaatggaata acactttaaa acagatagtt     7260

aaaaaattaa gagaacaatt tgggaataaa acaatagtct ttaatcaatc ctcaggaggg     7320

gacccagaaa ttgtaatgca cagttttaat tgtggagggg aatttttcta ctgtaataca     7380

acacaactgt ttaatagtac ttggataata ntantaatag tactaataat actgaaggaa     7440

atgaaactat cacactccca tgcagaataa aacaaattat aaacatgtgg caggaagtag     7500

gaaaagcaat gtatgcccct cccatcagag gacaaattag atgttcatca aatattacag     7560

ggctgctatt aacaagagat ggtggtnaat aacaacaacg agaccgagat cttcagacct     7620

ggaggaggag atatgaggga caattggaga agtgaattat ataaatataa agtagtaaaa     7680

attgaaccat taggagtagc acccaccaag gcaaagagaa gagtggtgca gagagaaaaa     7740

agagcagtgg gaataggagc tatgttcctt gggttcttgg gagcagcagg aagcactatg     7800

ggcgcagcgt caatgacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa     7860

cagcagaaca atttgctgag ggctattgag gcgcaacagc atctgttgca actcacagtc     7920

tggggcatca agcagctcca ggcaagagtc ctggctgtgg aaagatacct aaaggatcaa     7980

cagctcctgg ggatttgggg ttgctctgga aaactcattt gcaccactgc tgtgccttgg     8040

aatgctagtt ggagtaataa atctctggat gagatttgga ataacatgac ctggatggag     8100

tgggaaagag aaattgacaa ttacacaagc ttaatataca ccttaattga agaatcgcag     8160

aaccaacaag aaaagaatga acaagaatta ttggaattgg ataaatgggc aagtttgtgg     8220

aattggtttg acataacaaa ctggctgtgg tatataaaaa tattcataat gatagtagga     8280

ggcttggtag gtttaagaat agtttttgct gtactttcta tagtgaatag agttaggcag     8340

ggatactcac cattatcgtt tcagacccgc ctcccagccc cgaggggacc cgacaggccc     8400

gaaggaatcg aagaagaagg tggagagaga gacagagaca gatccggtcg attagtgaat     8460

ggattcttag cacttatctg ggacgacctg cggagcctgt gcctcttcag ctaccaccgc     8520

ttgagagact tactcttgat tgtaacgagg attgtggaac ttctgggacg cagggggtgg     8580

gaagccctca aatattggtg gaatctcctg cagtattgga gtcaggaact aaagaatagt     8640

gctgttagct tgctcaatgc cacagctata gcagtagctg aggggacaga tagggttata     8700

gaagtagtac aaagagctta tagagctatt ctccacatac ctanaagaat aagacagggc     8760

ttggaaaggg ctttgctata agatgggtgg caagtggtca aaacgtagtg tgggtggatg     8820

gcctactgta agggaaagaa tgagacgagc tgagccagca gcagatgggg tgggagcagt     8880

atctcgagac ctggaaaaac atggagcaat cacaagtagc aatacagcag ctactaatgc     8940

tgattgtgcc tggctagaag cacaagagga ggaggaggtg ggttttccag tcagacctca     9000

ggtaccttta agaccaatga cttacaaggc agctgtagat cttagccact ttttaaaaga     9060

aaagggggga ctggaagggc taatttactc ccaaaaaaga caagatatcc ttgatctgtg     9120

ggtctaccac acacaaggct acttccctga ttggcagaac tacacaccag ggccagggat     9180

cagatatcca ctgacctttg gatggtgctt caagctagta ccagttgagc cagagaaggt     9240

agaagaggcc aatgaaggag agaacaacag cttgttacac cctatgagcc tgcatgggat     9300

ggatgacccg gagaaagaag tgttagtgtg gaagtttgac agccgcctag catttcatca     9360

catggcccga gagctgcatc cggagtacta caagaactgc tgacatcgag ctttctacaa     9420

gggactttcc gctggggact ttccagggag gcgtggcctg ggcgggactg gggagtggcg     9480

agccctcaga tgctgcatat aagcagctgc tttttgcctg tactgggtct ctctggttag     9540

accagatctg agcctgggag ctctctggct anctagggaa cccactgctt aagcctcaat     9600

aaagcttgcc ttgagtgctt a                                               9621


<210> 6
<211> 9611
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (274)..(274)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (947)..(947)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5201)..(5201)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7384)..(7384)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8424)..(8424)
<223> a, c, t, g, unknown or other

<400> 6
tggaagggtt aatttactcc aagaaaaggc aagagatcct tgatttgtgg gtctatcaca       60

cacaaggcta cttccctgat tggcaaaact acacaccggg accaggggtc agatatccac      120

tgacctttgg atggtgcttc aagctagtgc cagttgaccc aagggaagta gaagaggcca      180

acgaaggaga agacaactgt ttgctacacc ctatgagcca gcatggaatg gaggatgaag      240

acagagaagt attaaaatgg aagtttgaca gtcngctagc acgcagacac atggcccgcg      300

agctacatcc ggagtattac aaagactgct gacacagaag ggactttccg ctgggacttt      360

ccactggggc gttccaggag gtgtggtctg ggcgggactg gggagtggtc aaccctcaga      420

tgctgcatat aagcagctgc ttttcgcctg tactgggtct ctctaggtag accagatctg      480

agcctgggag ctctctggct atctagggaa cccactgctt aagcctcaat aaagcttgcc      540

ttgagtgctc taagtagtgt gtgcccgtct gttgtgtgac tctggtaact agagatccct      600

cagacccttt ttggtagtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa      660

gcgaaagtaa gaccagagga gatctctcga cgcaggactc ggcttgctga agtgcactcg      720

gcaagaggcg agagcggcgg ctggtgagta cgccaaattt tatttgacta gcggaggcta      780

gaaggagaga gatgggtgcg agagcgtcaa tattaagagg gggaaaatta gataaatggg      840

aaaaaattag gttaaggcca gggggaaaga aacactatat gctaaaacac ctagtatggg      900

caagcaggga gctggaaaga tttgcactta accctggcct tttaganaca tcagaaggct      960

gtaaacaaat aataaaacag ctacaaccag ctcttcagac aggaacagag gaacttagat     1020

cattatacaa cacagtagca actctctatt gtgtacatga aaagatagag gtacgagaca     1080

ccaaggaagc cttagacaag atagaggaag aacaaaacaa aagtcagcaa aaaacacagc     1140

aggcaaaagc ggctgacgga aaggtcagtc aaaattatcc tatagtgcag aatctccaag     1200

ggcaaatggt acaccaggcc atatcaccta gaactttgaa tgcatgggta aaagtaatag     1260

aggagaaggc ttttagccca gaggtaatac ccatgtttac agcattatca gaaggagcca     1320

ccccacaaga tttaaacacc atgttaaata cagtgggggg acatcaagca gccatgcaaa     1380

tgttaaaaga taccatcaat gaggaggctg cagaatggga tagattacat ccagtacatg     1440

cagggcctat tgcaccaggc caaatgagag aaccaagggg aagtgacata gcaggaacta     1500

ctagtaccct tcaggaacaa atagcatgga tgacaagtaa cccacctatt ccagtgggag     1560

acatctataa aagatggata attctggggt taaataaaat agtaagaatg tatagccctg     1620

tcagcatttt ggacataaaa caagggccaa aggaaccctt tagagactat gtagaccggt     1680

tctttaaaac tttaagagct gaacaagcta cacaagatgt aaaaaattgg atgacagaca     1740

ccttgttggt ccaaaatgcg aacccagatt gtaagaccat tttaagagca ttaggaccag     1800

gggctacatt agaagaaatg atgacagcat gtcagggagt gggaggacct ggccacaaag     1860

caagagtgtt ggctgaggca atgagccaag caaacaatac aaacataatg atgcagagaa     1920

gcaattttaa aggccctaaa agaattgtta aatgtttcaa ctgtggcaag gaagggcaca     1980

tagccagaaa ttgcagggcc cctaggaaaa aaggctgttg gaaatgtgga aaggaaggac     2040

accaaatgaa agactgtact gagaggcagg ctaatttttt agggaaaatt tggccttccc     2100

acaaggggag gccagggaat ttccttcaga acagaccaga gccaacagcc ccaccagcag     2160

agagcttcag gttcgaggag acaacccccg ctccgaagca ggagccgaaa gacagggaac     2220

ccttaacttc cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg     2280

ccagataaag gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa     2340

tttgccagga aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag     2400

acagtatgat caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt     2460

aggacctaca cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact     2520

aaattttcca attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg     2580

cccaaaggtt aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg     2640

tgaagaaatg gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac     2700

tccagtattt gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag     2760

ggaactcaat aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc     2820

agggttaaaa aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt     2880

tcctttagat gaaggcttca ggaaatatac tgcattcacc atacctagta taaacaatga     2940

aacaccaggg attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc     3000

aatattccag agtagcatga caaaaatctt agagcccttt agagcacaaa atccagaaat     3060

agtcatctat caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca     3120

tagagcaaaa atagaggagt taagagaaca tctattaaag tggggattta ccacaccaga     3180

caagaaacat cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa     3240

atggacagta cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca     3300

gaagttagtg ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca     3360

actttgtaaa ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga     3420

agcagaatta gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata     3480

ttatgaccca tcaaaagact tgatagctga aatacagaaa caggggcatg accaatggac     3540

atatcaaatt taccaagaac cattcaaaaa tctgaaaaca gggaagtatg caaaaatgag     3600

gactgcccac actaatgatg taaaacagtt aacagaggca gtgcaaaaaa tagccatgga     3660

aagcatagta atatggggaa agactcctaa atttagacta cccatccaaa aagaaacatg     3720

ggagacatgg tggacagact attggcaagc cacctggatt cctgagtggg agtttgttaa     3780

tacccctccc ctagtaaaat tatggtacca gctggagaaa gaacccatag caggagcaga     3840

aactttctat gtagatggag cagctaatag ggaaactaaa ataggaaaag cagggtatgt     3900

tactgacaga ggaaggcaga aaattgtttc tctaactgaa acaacaaatc agaagactga     3960

attacaagca attcagctag ctttgcaaga ttcaggatca gaagtaaaca tagtaacaga     4020

ctcacagtat gcattaggaa tcattcaagc acaaccagat aagagtgaat cagagttagt     4080

caaccaaata atagaacaat taataaaaaa ggaaagggtc tacctgtcat gggtaccagc     4140

acataaagga attggaggaa atgaacaagt agataaatta gtaagtagtg gaatcaggaa     4200

agtgctgttt ctagatggaa tagataaggc tcaagaagag catgaaaagt atcacagcaa     4260

ttggagagca atggctagtg agtttaatct gccacccata gtagcaaaag aaatagtagc     4320

tagctgtgat aaatgtcagc taaaagggga agccatacat ggacaagtag actgtagtcc     4380

agggatatgg caattagatt gtacacattt agaaggaaaa atcatcctgg tagcagtcca     4440

tgtagccagt ggctacatag aagcagaggt tatcccagca gaaacaggac aagaaacagc     4500

atactatata ctaaaattag caggaagatg gccagtcaaa gtaatacata cagacaatgg     4560

cagtaatttc accagtgctg cagttaaggc agcctgttgg tgggcaggta tccaacagga     4620

atttggaatt ccctacaatc cccaaagtca gggagtagta gaatccatga ataaagaatt     4680

aaagaaaatc atagggcagg taagagatca agctgagcac cttaagacag cagtacaaat     4740

ggcagtattc attcacaatt ttaaaagaaa aggggggatt ggggggtaca gtgcagggga     4800

aagaataata gacataatag caacagacat acaaactaaa gaattacaaa aacaaattat     4860

aaaaattcaa aattttcggg tttattacag agacagcaga gaccctattt ggaaaggacc     4920

agccaaacta ctctggaaag gtgaaggggc agtagtaata caagataata gtgacataaa     4980

ggtagtacca aggaggaaag caaaaatcat taaggactat ggaaaacaga tggcaggtgc     5040

tgattgtgtg gcaggtagac aggatgaaga ttagaacatg gaatagttta gtaaagcacc     5100

atatgtatat ttcaaggaga gctaatggat ggttttacag acatcattat gaaagcagac     5160

atccaaaagt aagttcagaa gtacacatcc cattagggga ngctagatta gtaataaaaa     5220

catattgggg tttgcaaaca ggagaaagag attggcattt gggtcatgga gtctccatag     5280

aatggagatt gagaagatat agcacacaag tagaccctgg cctggcagac cagctaattc     5340

atatgcatta ttttgattgt tttgcagact ctgccataag aaaagccata ttaggacaca     5400

tagttattcc taggtgtgac tatcaagcag gacataataa ggtaggatct ctacaatact     5460

tggcactgac agcattgata aaaccaaaaa agataaagcc acctctgcct agtgttagga     5520

aattagtaga ggatagatgg aacaagcccc agaagaccag gggccgcaga gggaaccata     5580

caatgaatgg acactagagc ttctagagga actcaagcag gaagctgtca gacactttcc     5640

tagaccatgg ctccatagct taggacaata tatctatgaa acctatgggg atacttggac     5700

aggagttgaa gctataataa gaatactgca acaactactg tttattcatt tcagaattgg     5760

gtgccagcat agcagaatag gcattttgcg acagagaaga gcaagaaatg gagccagtag     5820

atcctaacct agagccctgg aaccatccag gaagtcagcc taaaactgct tgtaataagt     5880

gctattgtaa acactgtagc tatcattgtc tagtttgctt tcagacaaaa ggcttaggca     5940

tttcctatgg caggaagaag cggagacagc gacgaagcgc tcctccaagc agtgaggatc     6000

atcaaaatcc tatatcaaag cagtaagtat atgtaatgtt agatttacta gcaagagtag     6060

attatagatt aggagtagga gcattgatag tagcactaat catagcaata gttgtgtgga     6120

ccatagtata tatagaatat aggaaattgt taagacaaag aaaaatagac tggttaatta     6180

aaagaattag ggaaagagca gaagacagtg gcaatgagag tgagggggat actgaggaat     6240

tgtcaacaat ggtggatatg gggcatctta ggcttttgga tgttaatgat ttgtaatgtg     6300

gtggggaact tgtgggtcac agtctattat ggggtacctg tgtggaaaga agcaaaaact     6360

actctattct gtgcatcaga tgctaaagca tatgagaaag aagtgcataa tgtctgggct     6420

acacatgcct gtgtacccac agaccccaac ccacaagaaa tagttttgga aaatgtaaca     6480

gaaaatttta acatgtggaa aaatgacatg gtggatcaga tgcatgagga tataatcagt     6540

ttatgggatc aaagcctaaa gccatgtgta aagttgaccc cactctgtgt cactttaaac     6600

tgtacaaatg ttaatattac taataataat aaacaataat aacatgaatg aagaaataaa     6660

aaattgctct ttcaatataa ccacagaaat aagagataag aaacagaaag tgtatgcact     6720

tttttataga cttgatatag taccacttaa tgagaataac aattctagtg agtatagatt     6780

aataaattgt aatacctcaa ccataacaca agcctgtcca aaggtctctt ttgacccaat     6840

tcctatacat tattgtgctc cagctggtta tgcgattcta aagtgtaata ataagacatt     6900

caatgggaca ggaccatgca ataatgtcag cacagtacaa tgtacacatg gaattaagcc     6960

agtggtatca actcaactac tgttaaatgg tagcctagca gaagaagaga taataattag     7020

atctgaaaat ctgacaaaca atgtcaaaac aataatagta catcttaatg aatctgtaga     7080

aattgtgtgt acaagaccca acaataatac aagaaaaagt ataaggatag gaccaggaca     7140

aacattctat gcaacaggag acataatagg agacataaga caagcacatt gtaacattag     7200

tgaagataaa tggaataaaa ctttacaaaa ggtaagtaaa aaattaaaag aacacttccc     7260

taataaaaca ataaaatttg aaccatcctc aggaggggac ctagaaatta caacacatag     7320

ctttaattgt agaggagaat ttttctattg caatacatca aaactgttta atagtacata     7380

caanaataat actaataata atacaaattc aaccatcaca ctcccatgca gaataaaaca     7440

aattataaac atgtggcagg aggtaggacg agcaatgtat gcccctccca ttgcaggaaa     7500

cataacatgt aaatcaaata tcacaggact actattgaca cgtgatggag gaaaaaaaaa     7560

taataacaca gagatattca gacctggagg aggagatatg agggacaatt ggagaagtga     7620

attatataaa tataaagtgg tagaaattaa gccattggga gtagcaccca ctgaggcaaa     7680

aaggagagtg gtggagagag aaaaaagagc agtgggaata ggagctgtgt tccttgggtt     7740

cttgggagca gcaggaagca ctatgggcgc ggcgtcaata acgctgacgg tacaggccag     7800

acaattgttg tctggtatag tgcaacagca aagcaatttg ctgagggcta tagaggcgca     7860

acagcatatg ttgcaactca cggtctgggg cattaagcag ctccagacaa gagtcctggc     7920

tatagaaaga tacctaaagg atcaacagct cctagggatt tggggctgct ctggaaaact     7980

catctgcacc actgctgtgc cttggaactc cagttggagt aataaatctc aagaagatat     8040

ttgggataac atgacctgga tgcagtggga tagagaaatt agtaattaca cagacacaat     8100

atacaggttg cttgaagact cgcaaaacca gcaggaaaaa aatgaaaaag atttattagc     8160

attggacagt tggaaaaatc tgtggaattg gtttgacata acaaattggc tgtggtatat     8220

aaaaatattc ataatgatag taggaggctt gataggttta agaataattt ttgctgtgct     8280

ctctatagtg aatagagtta ggcagggata ctcacctttg tcgtttcaga cccttacccc     8340

aaacccgagg ggacccgaca ggctcggaag aatcgaagaa gaaggtggag agcaagacag     8400

agacagatcc attcgattag tgancggatt cttagcactt gcctgggacg atctgcggag     8460

cctgtgcctc ttcagctacc accgattgag agacttcata ttggtggcag cgagagcagt     8520

ggaacttctg ggacgcagca gtctcagggg actacagagg gggtgggaag cccttaagta     8580

tctgggaagt cttgtgcagt attggggtct ggagctaaaa aagagtgcta ttagtctgct     8640

tgataccata gcaatagcag tagctgaagg aacagatagg attatagaat taatacaaag     8700

aatttgtaga gctatccgca acatacctag aagaataaga cagggctttg aagcagcttt     8760

gctataaaat ggggggcaag tggtcaaaaa gcagtatagt tggatggcct gctgtaagag     8820

aaagaataag aagaactgag ccagcagcag agggagtagg agcagcgtct caagacttag     8880

ataaacatgg agcacttaca agcagcaaca cagccaccaa taatgctgat tgtgcctggc     8940

tggaagcaca agaggaggaa gaagaagtag gctttccagt cagacctcag gtgcctttaa     9000

gaccaatgac ttataaggga gcattcgatc tcagcttctt tttaaaagaa aaggggggac     9060

tggaagggtt aatttactct aagaaaaggc aagagatcct tgatttgtgg gtctatcaca     9120

cacaaggcta cttccctgat tggcaaaact acacaccggg accaggggtc agatatccac     9180

tgacctttgg atggtgcttc aagctagtgc cagttgaccc aagggaagta gaagaggcca     9240

acgaaggaga aaacaactgt ttgctacacc ctatgagcca gcatggaatg gaggatgaag     9300

acagagaagt attaaagtgg aagtttgaca gtagcctagc acgcagacac atggcccgcg     9360

agctacatcc ggagtattac aaagactgct gacacagaag ggactttccg ctgggacttt     9420

ccactggggc gttccaggag gtgtggtctg ggcgggactg ggagtggtca accctcagat     9480

gctgcatata agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga     9540

gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct     9600

tgagtgctct a                                                          9611


<210> 7
<211> 9581
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (24)..(25)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (39)..(39)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (260)..(260)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (347)..(347)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (764)..(764)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5940)..(5940)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6636)..(6636)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6647)..(6647)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6656)..(6656)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6665)..(6665)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7408)..(7408)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7412)..(7412)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7423)..(7423)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8922)..(8922)
<223> a, c, t, g, unknown or other

<400> 7
attatggaag ggctaatttg gtcnnaaaga agacaagana tccttgatct ttgggtctac       60

cacacacaag gcttcttccc tgattggcaa aactacacac cagggccagg gattagatat      120

ccactgacct ttggatggtg cttcgagcta gtaccagttg atccagagga ggtagaagag      180

gccactgaag gagagaacaa ctgcttgtta caccctgtgt gccagcatgg aatggaggac      240

ccggagagag aagtgttaan gtggagattt aacagcagac tagcatttga acacaaggcc      300

cgaatactgc atccggagta ctacaaagac tgctgacacc gagtttncta caagggactt      360

tccgctgggg actttccagg gaggcgtaac cggggcggga ctggggagtg gctaaccctc      420

agatgctgca tataagcagc tgctttttgc ctgtactggg tctctctggt tagaccagat      480

ttgagcctga gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt      540

gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta actagagatc      600

cctcagaccc ctttagtcag agtggaaaat ctctagcagt ggcgcccgaa cagggacctg      660

aaagcgaaag tagaaccaga ggagctctct cgacgcagga ctcggcttgc tgaagcgcgc      720

acggcaagag gcgaggggca gcgactggtg agtacgctaa aaanttttga ctagcggagg      780

ctagaaggag agagatgggt gcgagagcgt cagtattaag cgggggaaaa ttagatgaat      840

gggaaaaaat tcggttacgg ccagggggaa agaaaaaata tagactaaaa catatagtat      900

gggcaagcag ggagctagaa cgatttgcac ttaatcctgg ccttttagaa acatcagaag      960

gctgtaaaca aataatagga cagctacaac cagctattca gacaggatca gaggaactta     1020

aatcattata taatacagta gcaaccctct attgtgtaca tgaaaggata aaggtaacag     1080

acaccaagga agctttagac aagatagagg aagaacaaac caaaagtaag aaaaaagcac     1140

agcaagcaac agctgacaca agaaacagca gccaggtcag ccaaaattat cctatagtgc     1200

aaaacctaca ggggcaaatg gtacaccagg ccatatcacc tagaactttg aacgcatggg     1260

taaaagtaat agaggagaag gctttcagcc cagaagtaat acccatgttt tcagcattat     1320

cagaaggagc caccccacaa gatttaaaca ccatgctaaa cacagtgggg ggacatcaag     1380

cagccatgca aatgttaaaa gagaccatca atgaggaagc tgcagaatgg gataggctac     1440

atccagtgca tgcagggcct attgcaccag gccaaatgag agaaccaagg ggaagtgata     1500

tagcaggaac tactagtacc cttcaggaac aaataggatg gatgacaagc aatccaccta     1560

tcccagtagg agaaatctat aaaagatgga taatcctagg attaaataaa atagtaagaa     1620

tgtatagccc tgtcagcatt ttggacataa gacaaggacc aaaggaaccc tttagagact     1680

atgtagatcg gttctataaa actctaagag ccgagcaagc ttcacaggat gtaaaaaatt     1740

ggatgactga aaccttgttg gtccaaaatg caaacccaga ttgtaaaact atcttaaaag     1800

cattgggacc agcggctaca ttagaagaaa tgatgacagc atgtcaggga gtggggggac     1860

ccagtcataa agcaagagtt ttggctgagg caatgagcca agcaacaaat gcaaatgctg     1920

ctataatgat gcagagaggc aattttaagg gcccaaagaa aatcattaag tgtttcaact     1980

gtggcaaaga agggcacata gcaaaaaatt gcagggctcc taggaaaaag ggctgttgga     2040

aatgtggaag ggaaggacac caaatgaaag attgcactga aagacaggct aattttttag     2100

ggaaaatttg gccttcccac aagggaaggc cagggaactt ccttcagagc agaccagagc     2160

caacagcccc accagcagag agcttcgggt ttggggagga gataacaccc tctcagaaac     2220

aggagcagaa agacaaggaa ctgtatcctt tagcttccct caaatcactc tttggcaacg     2280

accccttgtc acagtaaaga tagggggaca gctaaaggaa gctctattag atacaggagc     2340

agatgataca gtattagaag aaataaattt gccaggaaaa tggaaaccaa aaatgatagg     2400

gggaattgga ggctttatca aagtaagaca gtatgatcaa atactcgtag aaatctgtgg     2460

acataaagct ataggtacag tattagtagg acctacacct gtcaacataa ttggaagaaa     2520

tttgttgact cagattggtt gcactttaaa ttttccaatt agtcctattg aaactgtacc     2580

agtaaaatta aagccaggga tggatggccc aaaagttaaa caatggccat tgacagaaga     2640

aaaaataaaa gcactaacag aaatttgtac agaaatggaa aaggaaggaa aaatttcaag     2700

aattgggcct gaaaatccat acaatactcc aatatttgcc ataaagaaaa aagacagtac     2760

taagtggaga aaattagtag atttcagaga acttaataag agaactcaag acttctggga     2820

agttcaacta ggaataccac atcctgcagg gctaaaaaag aaaaaatcag taacagtact     2880

ggatgtgggt gatgcatatt tttcagttcc cttagatgaa gactttagaa aatatactgc     2940

attcaccata cctagtataa acaatgagac accaggaatt agatatcagt acaatgtgct     3000

tccacaagga tggaaaggat caccggcaat attccaaagt agcatgacaa aaatcttaga     3060

accttttaga aaacaaaatc cagaaatggt tatctatcaa tacatggatg atttgtatgt     3120

aggatctgac ttagaaatag ggcagcatag aataaaaata gaggaattaa gggaacacct     3180

attgaagtgg ggatttacca caccagacaa aaagcatcag aaagaacctc catttctttg     3240

gatgggttat gaactccatc ctgataaatg gacagtacag cctataaaac tgccagaaaa     3300

agaaagctgg actgtcaatg atatacagaa gttagtggga aaattaaatt gggcaagcca     3360

gatttatcca ggaattaaag taagacaatt atgcaaatgc cttaggggag ccaaagcact     3420

gacagaagta gtaccactga cagaagaagc agaattagaa ctggcagaaa acagggaaat     3480

tctaaaagaa ccagtacatg gagtgtatta tgacccatca aaagacttaa tagcagaaat     3540

acagaaacaa gggcaagacc aatggacata tcaaatttat caagaacaat ataaaaatct     3600

gaaaacagga aagtatgcaa aaatgagggg tacccacact aatgatgtaa aacaattaac     3660

agaggcagtg caaaaaatag cccaagaatg tatagtgata tggggaaaga ctcctaaatt     3720

tagactaccc atacaaaagg aaacatggga aacatggtgg acagagtatt ggcaggccac     3780

ctggattcct gagtgggagt ttgtcaatac ccctccttta gttaaattat ggtaccagtt     3840

agagaaggaa cccatagtag gagcagaaac tttctatgta gatggggcag ctaatagaga     3900

gactaaatta ggaaaagcag gatatgttac tgacagagga agacagaaag ttgtctctct     3960

aactgacaca acaaatcaga agactgaatt acaagccatt aatctagctt tgcaggattc     4020

gggattagaa gtaaacatag taacagactc acaatatgca ttaggaatca ttcaagcaca     4080

accagataag agtgaatcag agttagtcag tcaaataata gagcagttaa taaaaaagga     4140

aaaggtctac ctatcatggg taccagcaca caaggggatt ggaggaaatg aacaagtaga     4200

taaattagtc agtaatggaa tcagaaaaat actattcttg gatggaatag ataaggctca     4260

agaagaacat gagaaatacc acaacaattg gagagcaatg gctagtgatt ttaacctgcc     4320

acctgtggta gcaaaagaaa tagtagctag ctgtgataaa tgtcagctaa aaggagaagc     4380

cttgcatgga caagtagact gtagtccagg aatatggcaa ttagattgta cacatttaga     4440

aggaaaagtt atcctggtag cagtccatgt agccagtggc tatatagaag cagaagttat     4500

tccagcagaa acagggcagg aaacagccta ctttctctta aaattagcag gaagatggcc     4560

agtaaaagta gtacatacag acaatggcag caatttcacc agcgctgcag ttaaggccgc     4620

ctgttggtgg gcaggcatca agcaggaatt tggaattccc tacaatcccc aaagtcaagg     4680

agtagtagaa tctatgaata aagaattaaa gaaaattata ggacaggtaa gagatcaagc     4740

tgaacatctt aagacagcag tacaaatggc agtattcatc cacaatttta aaagaaaagg     4800

ggggattggg gggtacagtg caggggaaag aataatagac ataatagcaa cagacataca     4860

aactaaagaa ttacaaaaac aaatcataaa aattcaaaat tttcgggttt attacaggga     4920

cagcagagat ccaatttgga aaggaccagc aaagcttctc tggaaaggtg aaggggcagt     4980

agtaatacaa gacaatagtg aaataaaggt agtaccaaga agaaaagtaa agatcattag     5040

ggattatgga aaacagatgg caggtgatga ttgtgtggca agtagacagg atgaggatta     5100

gaacatggaa gagtttagta aaacatcata tgtatgtttc aaagaaagct caaggatggt     5160

tgtatagaca tcactatgac tgcccacacc caaaaataag ttcagaagta cacatcccac     5220

taggagaagc tagactggta gtaaaaacat attggggtct gcatacagga gaaagagaat     5280

ggcatctggg tcagggagtc tccatagaat ggaggaaaag gagatatagc acacaagtag     5340

accctggcct ggcagaccaa ctaattcata tatattattt tgattgtttt gcagaatctg     5400

ctataagaaa agccatatta ggacatatag ttactcctag gtgtaattat caagcaggac     5460

ataacaaggt aggatcttta caatatttgg cactaacagc attaataaca ccaaaaaaga     5520

taaaaccacc tttgcctagt gttaggaagc tgacagaaga cagatggaac aagccccaga     5580

ggaccaaggg ccacagaggg agccatacaa tgaatggaca ttagagcttt tagaggagct     5640

taagagtgaa gctgttagac actttcctag gatatggctt catggcctag gacaacatat     5700

ctatgaaact tatggggata cctggacagg agttgaagct ataataagaa tccttcaaca     5760

actactgttt atccatttca gaattgggtg tcaacatagc agaataggca ttactcgaca     5820

gagaagaaca agaaatggat ccagtagatc ctaacctaga gccctggaac catccaggaa     5880

gtcagcctag gactccttgt aacaagtgtt attgtaaaaa gtgttgctat cattgccaan     5940

tttgcttcat aacgaaaggc ttaggcatct cctatggcag gaagaagcgg agacagcgac     6000

gaagacctcc tcaaggcggt caggctcatc aagatcctat accaaagcag taagtagtac     6060

atgtaatgca atctttagtg atattagcaa tagtagcatt agtagtagcg ctaataatag     6120

caatagttgt gtggactata gtattcatag agtgtagaag attaaaaagg caaagaaaaa     6180

tagactggtt aattgataga ataagagaaa gagcagaaga tagtggcaat gagagtgagg     6240

gagatagaga ggaattatca gcacttgtgg agatggggca ccatgctcct tgggatgttg     6300

atgacatgta gtgttgcagg aaagttgtgg gtcacagttt attatggggt acctgtgtgg     6360

aaagaagcaa ccactactct attttgtgca tcagatgcta aatcatataa aacagaggca     6420

cataatatct gggctacaca tgcctgtgta ccaacagacc ccaacccaca agaaataaaa     6480

ctagaaaatg tcacagaaaa ctttaacatg tggaaaaata acatggtgga gcagatgcat     6540

gaggatataa tcagtttatg ggatcaaagc ctaaaaccat gtgtaaaatt aaccccactc     6600

tgtgtcactt taaactgcac tgattggaag aataanaata ccactantat aacacnaatg     6660

agganatagg aatgaaaaac tgctctttca atataaccac agaagtaaga gataagaaga     6720

agcaagtaca tgcacttttt tataaacttg atgtggtaca aatagataat ataatactaa     6780

taataccagc tatagattaa taaattgtaa tacctcagcc attacacagg cgtgtccaaa     6840

ggtaaccttt gagccaattc ccatacatta ttgtgcccca gctggatttg caattctaaa     6900

atgtaatgat aagaagttca atgggacggg tccatgcaaa aatgtcagca cagtacagtg     6960

tacacatggg attaagccag tagtgtcaac tcaactgttg ttgaatggca gtctagcaga     7020

agaagagata ataattagat ctgaaaatct cacaaataat gctaaaatca taatagtaca     7080

gcttaatgag tctgtaacaa ttaattgcac aaggccctac aacaatacaa gacaaagtat     7140

acatatagga ccagggcaag cactctatac aacaaaaata ataggagata taagacaagc     7200

acattgtaat attagtagag cagaatggaa taaaacttta caacaggtag ctaaaaaatt     7260

aggagacctt cttaacaaga caacaataat ttttaaacca tcctcgggag gggacccaga     7320

aattacaaca cacagcttta attgtggagg ggaatttttc tactgcaata catcaggact     7380

gtttaatagt acatggaaat aataatanta anaatagtaa tgngaaaaaa aatgatacaa     7440

tcacactccc atgcagaata aaacaaatta taaacatgtg gcagggagta ggaaaagcaa     7500

tgtatgcccc tcccattgaa ggactaatca aatgttcatc aaatattaca ggactattgt     7560

tgacaagaga tggtggtaat aataatagtc agaatgagac cttcagacct ggaggaggag     7620

atatgagaga caattggaga agtgaattat acaaatataa agtagtaaga attgaaccac     7680

taggtctagc acccaccaag gcaaagagaa gagtggtgga aagagaaaaa agagcaatag     7740

gactaggagc tatgttcctt gggttcttgg gagcagcagg aagcacgatg ggcgcagcgt     7800

cactgacgct gacggtacag gccagacagt tattgtctgg tatagtgcaa cagcaaaaca     7860

atttgctgag ggctatagag gcgcaacagc atctgttgca actcacagtc tggggcatta     7920

aacagctcca ggcaagagtc ctggctgtgg aaagatacct aaaggatcaa cagctcctag     7980

gaatttgggg ttgctctgga aaacacattt gcaccactaa tgtgccctgg aactctagct     8040

ggagtaataa atctctagat gagatttggg ataacatgac ctggatggag tgggaaagag     8100

aaattgacaa ttacacaggt ttaatataca gcttaattga agaatcgcaa acccagcaag     8160

aaaagaatga acaagaacta ttgcaattgg acaaatgggc aagtttgtgg aattggttta     8220

gcataacaaa atggctgtgg tatataaaaa tattcataat gatagtagga ggcttgatag     8280

gtttaagaat agtttttgct gtgctttctt tagtaaatag agttaggcag ggatattcac     8340

ctctgtcgtt tcagaccctc ctcccagccc cgaggggacc cgacaggccc gaaggaatag     8400

aagaagaagg tggagagcaa ggcagaggca gatccattcg attggtgaac ggattctcag     8460

cacttatctg ggacgatctg aggaacctgt gcctcttcag ctaccaccgc ttgagagact     8520

taatcttaat tgcaacgagg attgtggaac ttctgggacg cagggggtgg gaagccatca     8580

aatatctgtg gaatctcctg cagtattgga ttcaggaact aaagaatagt gctattagct     8640

tgcttaatac cacagcaata gcagtagctg aggggacaga tagggttata gaaatagtac     8700

aaagagctgt tagagctatt cttaacatac ccagacgaat aagacagggc ttggaaaggg     8760

ctttactata aaatgggtgg caaatggtca aaaagtagta tagttggatg gcctgctata     8820

agggaaagaa taagaagaac tgatccagca gcagaagggg tgggagcagt atctcgggac     8880

ctggaaaaac atggggcaat cacaagtagc aatacagcac anactaatcc tgactgtgcc     8940

tggctagaag cacaagaaga ggacgaggaa gtgggttttc cagtcagacc tcaggtacca     9000

ttaagaccaa tgacttacaa gggagctgta gatctgagcc actttttaaa agaaaagggg     9060

ggactggaag ggttaatttg gtcccagaaa agacaagaga tccttgatct ttgggtctac     9120

cacacacaag gctacttccc tgattggcaa aactacacac cagggccagg gattagatat     9180

ccactgacct ttggatggtg cttcgagcta gtaccagttg atccaaagga ggtagaagag     9240

gacactgaag gagagaacaa ctgcttgtta caccctatgt gccagcatgg aatggaggac     9300

ccggagagag aagtgttaat gtggagattt aacagcagac tagcatttga acacaaggcc     9360

cgaatgaagc atccggagtt ctacaaagac tgctgacacc gagttttcta caagggactt     9420

tccgctgggg actttccagg gaggcgtaac aggggcggga ctgggagtgg ctaaccctca     9480

gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctcttgtt agaccagatt     9540

tgagcctgag agctctctgg ctagctaggg aacccactgc t                         9581


<210> 8
<211> 8976
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (23)..(23)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (191)..(191)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (250)..(250)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (426)..(426)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (439)..(439)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (704)..(704)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (795)..(795)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (799)..(799)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (826)..(826)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (922)..(922)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1012)..(1012)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1262)..(1262)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1285)..(1285)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1576)..(1576)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2406)..(2406)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2565)..(2565)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2788)..(2788)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2862)..(2862)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3287)..(3287)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3570)..(3570)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3744)..(3744)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3793)..(3793)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3829)..(3829)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3864)..(3864)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3914)..(3914)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3935)..(3935)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4158)..(4158)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4211)..(4211)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4506)..(4506)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4539)..(4539)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4541)..(4541)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4597)..(4597)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4773)..(4773)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4822)..(4822)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5025)..(5025)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5159)..(5159)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5254)..(5254)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5266)..(5266)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5281)..(5282)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5284)..(5284)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5359)..(5359)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5382)..(5382)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5405)..(5408)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5426)..(5426)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5443)..(5443)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5519)..(5519)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5549)..(5549)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5767)..(5767)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5813)..(5813)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5939)..(5939)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5987)..(5987)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5989)..(5990)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6003)..(6005)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6008)..(6008)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6013)..(6013)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6084)..(6084)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6088)..(6088)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6112)..(6112)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6138)..(6139)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6142)..(6142)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6144)..(6145)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6157)..(6157)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6279)..(6279)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6522)..(6522)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6559)..(6559)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6578)..(6578)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6640)..(6640)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6764)..(6764)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6915)..(6915)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6917)..(6917)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6925)..(6925)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6984)..(6984)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6992)..(6992)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7036)..(7036)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7066)..(7066)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7107)..(7107)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7195)..(7195)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7407)..(7407)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7458)..(7458)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7484)..(7484)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7696)..(7696)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7937)..(7937)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7947)..(7947)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7980)..(7980)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8012)..(8012)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8022)..(8022)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8055)..(8055)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8179)..(8185)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8187)..(8187)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8270)..(8270)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8307)..(8307)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8371)..(8371)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8382)..(8382)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8460)..(8460)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8477)..(8477)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8515)..(8515)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8640)..(8640)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8663)..(8664)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8680)..(8680)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8711)..(8711)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8949)..(8976)
<223> a, c, t, g, unknown or other

<400> 8
cagtggcgcc cgaacaggga cgngaaagcg aaagtagaac cagagaagat ctctcgacgc       60

aggactcggc ttgctgaagt gcacacggca agaggcgaga gcggcgactg gtgagtacgc      120

caaattttga ctagcggagg ctagaaggag agagatgggt gcgagagcgt cagtattaag      180

cgggggaaaa ntagatgcat gggaaaaaat tcggttaagg ccggggggaa agaaaaaata      240

tagaatgaan catctagtat gggcaagcag ggagctagaa cgatttgcaa ttgatcctgg      300

ccttctagaa acatcagaag gctgtcaaaa aataatagga cagttacaac catcccttca      360

gacaggatca gaagagctta gatcattata taatacagta gcagtcctct attttgtaca      420

tcaaangata gaggtaaang acaccaagga agctttagac aagctagagg aagaacaaaa      480

caaaagtcag caaaagacac agcaagcggc agctgacaaa ggggtcagtc aaaattaccc      540

tatagtacag aatcttcagg gacaaatggt acatcagtct atatcaccta gaactttaaa      600

tgcatgggta aaggtgatag aagagaaggc ttttagccca gaagtaatac ccatgttttc      660

agcattatca gaaggggcca ctccacaaga tttaaacacc atgntaaata cagtgggggg      720

acatcaagca gccatgcaaa tgttaaaaga caccatcaat gaggaagctg cagaatggga      780

cagattacat ccagngcang caggacctat cccaccaggc cagatnaggg aacctagggg      840

aagtgatata gctggaacta ctagtaccct tcaggaacaa atacaatgga tgacaagcaa      900

cccacctgtc ccagtgggag anatctataa aagatggatc atcctaggat taaataaaat      960

agtaagaatg tatagccctg tcagcatttt ggacataaga caagggccaa angaaccctt     1020

tagagactat gtagacaggt tctttaaaac cctaagagct gagcaagcta cacaggaagt     1080

aaagggttgg atgacagaca ccttgttggt ccaaaatgcg aacccagatt gtaagaccat     1140

tttaaaagca ttgggaccag gggctacact agaagaaatg atgacagcat gtcagggagt     1200

gggaggacct ggccataagg caagagtttt ggctgaggca atgagccaag caacaaatgc     1260

anctataatg atgcagaaaa gtaantttaa gggccaaaga agaattgtta aatgttttaa     1320

ttgtggcaaa gaaggacaca tagccaaaaa ttgcagggcc cctagaaaaa agggctgttg     1380

gaaatgtgga agagaaggac accaaatgaa agactgcact gaaagacagg ctaatttttt     1440

agggaaaatt tggccttcca acaaggggag gcccggaaat ttccttcaga acaggccaga     1500

gccaacagcc ccgccagcag agagcttcgg gttcagagag gagataaccc cctctccgaa     1560

gcaggagcag aaagangagg gactgtaccc tcccttagct tccctcaaat cactctttgg     1620

caacgacccc tagtcacaat aaaagtaggg ggacagctaa aggaagctct attagataca     1680

ggagcagatg atacagtatt agaagacata aatttgccag gaaaatggaa accaaaaatg     1740

atagggggaa ttggaggttt tatcaaagta aaacagtatg ataacatact catagaaatt     1800

tgtggacaca aggctatagg tacagtgtta gtaggaccta cgcctgtcaa cataattgga     1860

agaaatatgt tgactcagat tggttgtact ttaaattttc caattagtcc tattgaaact     1920

gtaccagtaa aattgaagcc aggaatggat ggcccaaagg ttaaacaatg gccattgaca     1980

gaagaaaaaa taaaagcatt aacagaaata tgtacagaaa tggaaaaaga aggaaaaatt     2040

tcaaaaattg ggcctgaaaa tccatacaat actccagtat ttgccataaa gaaaaaagac     2100

agtactaaat ggaggaaatt agtagatttc agagaactta ataaaagaac tcaagatttt     2160

tgggaggttc aattaggaat accacatcct gcagggttaa aaaagaaaaa gtcagtaaca     2220

gtactggatg tgggggatgc atatttttca gttcccttag ataaggattt caggaagtac     2280

actgcattca ccatacctag tgtcaacaat gagacaccag gaattaggta ccagtacaat     2340

gtgcttccac aaggatggaa aggatcacca gcaatattcc aatgtagcat gacaaaaatc     2400

ttaganccct ttagaacaaa aaatccagac atagttatct accaatacat ggatgatttg     2460

tatgtagggt ctgacttaga aatagggcag catagaacaa aaatagagga gttaagagaa     2520

catctactga aatggggatt tactacacca gacaaaaaac atcanaaaga acccccattc     2580

ctttggatgg ggtatgaact ccatcctgat aaatggacag tgcagcctat acaattgcca     2640

gacaaggaca gctggactgt caatgatata cagaagttag taggaaaact aaattgggca     2700

agtcagattt atccagggat taaagtaaag caattatgta aactccttag gggagccaag     2760

gcactaacag acatagtgcc actgactnca gaagcagagt tagaattggc agagaatagg     2820

gagattctaa aagaaccagt acatggggta tattatgacc cntcaaaaga cttaatagca     2880

gaaatacaga aacaagggca agggcaatgg acatatcaaa tttatcaaga gccatttaaa     2940

aatctaaaaa caggaaagta tgcaaaaatg aggtctgccc acactaatga tgtaaaacaa     3000

ttaacagaag cagtgcaaaa gatagctcta gaaagcatag taatatgggg aaagactcct     3060

aagtttaaac tacccatact aaaagagaca tgggatacat ggtggacaga gtattggcaa     3120

gccacctgga ttcctgaatg ggagtttgtc aatacccccc ctctagtaaa actatggtat     3180

cagttagaaa cagagcccat agcaggagca gaaaccttct atgtagatgg ggcatctaat     3240

agagagacca aaaaaggaaa agcaggatat gttactgaca gaggaanaca aaaggctgtc     3300

tccctaactg agaccacaaa tcagaaggct gagttacaag caattcattt agctttacag     3360

gattcaggat cagaagtgaa catagtaaca gactcacagt atgcattagg aatcattcaa     3420

gcacaaccag ataagagtga atcagagtta gtcaatcaaa taatagagca attaatacaa     3480

aaggaaaagg tctacctgtc atgggtacca gcacacaaag ggattggagg aaatgaacaa     3540

gtagataaat tagtcagtgc tggaatcagn aaaatactgt ttttagatgg gatagataag     3600

gcacaagagg aacatgaaaa atatcacaac aattggagag caatggctag tgattttaat     3660

ctgccacctg tagtagcaaa agaaatagta gctagctgtg ataagtgtca gctaaaaggg     3720

gaagccatgc atggacaagt agantgtagt ccagggatat ggcaattaga ttgtacacat     3780

ttagaaggaa aanttatcct ggtagcagtc catgtagcta gtgggtacnt agaagcagaa     3840

gttatcccag cagaaacagg acangaaaca gcctacttca tactaaagtt agcaggaaga     3900

tggccagtaa aaanaataca tacagacaat ggcancaatt tcaccagtgc cgcggttaag     3960

gcagcctgtt ggtgggcagg tatccagcag gaatttggaa ttccctacaa cccccaaagt     4020

caaggagtag tagaatctat gaataaagag ctaaagaaga tcataggaca ggtaagagat     4080

caagctgaac atcttaagac agcagtacaa atggcagtat tcatccacaa ttttaaaaga     4140

aaagggggga ttgggggnta cagtgcaggg gaaagaataa tagacataat atcaacagac     4200

atacaaacta nagaattaca aaaacaaatt ataaaaattc aaaatttccg ggtttattac     4260

agggacagca gagacccagt ttggaaagga ccagcaaagc tactctggaa aggtgaaggg     4320

gcagtagtca tacaagacaa tagtgaaata aaggtagtac caagaagaaa agcaaagatc     4380

attagggatt atggaaaaca gatggcaggt gatgattgtg tggcaggtag acaggatgag     4440

gattaacaca tggaaaagtt tagtaaaata ccatatgcat gtttcaaaga aagccaaaag     4500

atggtnttat agacatcact ttgaaagcag gcatccaana ntaagttcag aagtacacat     4560

cccactagag gaagctaaat tagtaataac aacatantgg gggctgcata caggagaaag     4620

agattggcat ctgggtcagg gagtctccat agaatggagg caggggaggt ataggacaca     4680

aatagaccct ggcctggcag accaactgat ccatatatat tattttgatt gtttttcaga     4740

atctgccata aggaaagcca tattaggaca tanaattagc cctaggtgta actatcaagc     4800

aggacataac aaggtaggat cnctacaata tttggcacta acagcattaa tagctccaaa     4860

gaagacaaag ccgcctttgc ctagtgtcaa gaaactagta gaagacagat ggaacaagcc     4920

ccaggagacc aggggccaca gagggagcca tacaatgaat ggacactaga gcttttagag     4980

gagcttaaga atgaagctgt tagacatttt cctaggccat ggctncatgg cttaggacaa     5040

catatctata acacctatgg ggatacttgg gagggagttg aagctataat aaggatattg     5100

caacaactac tgtttatcca tttcagaatt gggtgccatc atagcagaat aggcattant     5160

cgacagagaa gagtaagaaa tggagctagt agatcctaac ttagatccct ggaaccatcc     5220

aggaagccag cctacaactc cttgtaccaa atgntattgt aaacgntgtt gctttcattg     5280

nnantggtgc tttacaacga agggcttagg catctcctat ggcaggaaga agcggagaca     5340

gcgacacaga actcctcana gcagtcagat acatcaagat cntgtaccaa agcagtaagt     5400

attgnnnnta gtatatgtaa tgtcanattt gttagcaata agnatagcag cattaatagt     5460

agcactaata atagcaatag ttgtgtggac tatagtatat atagaatata agaaactgnt     5520

aaggcaaaga aaaataaata ggttatatna aagaataaga gaaagagcag aagacagtgg     5580

caatgagagt gagggggatg cagaggaatt ggcagcactt ggggaaatgg ggccttttat     5640

tcctggggat attaataatc tgtaatgctg cagaaaactt gtgggtcaca gtctattatg     5700

gggtacctgt gtggaaagaa gcaaccacta ctctattctg tgcatcagat gctaaatcat     5760

atgaaanaga ggtacataat gtctgggcta cacatgcctg tgtacccaca gancccaatc     5820

cacaagaagt agttctggaa aatgtaacag aaaattttga tatgtggaaa aataacatgg     5880

tagaacaaat gcatacagat ataatcagtt tatgggatca aagcctaaag ccatgtgtna     5940

agttaacccc actctgtgtt actttaaatt gtactaatgc cactacnann agtaccacta     6000

ctnnnaanga cancaccctg aaggaagaac caggggcaat acaaaactgt tctttcaata     6060

tgaccacaga agtaagagat aagnagcnga aagtacatgc acttttttat anacttgata     6120

tagtaccaat cagcaatnna anannagtag agaatanagg ctaataaatt gtaatacctc     6180

aaccattaca caggcttgtc caaaggtatc ttgggatcca attcccatac attattgtgc     6240

tccagctggt tatgcgattc taaagtgtaa tgataaaang ttcaatggga cagggccatg     6300

caagaatgtc agcacagtac aatgtacaca tggaattaaa ccagtggtat caactcaatt     6360

gttgttaaat ggcagcctag cagaagaaga tataataatc agatctcaaa atatctcaga     6420

taatgcaaaa accataatag tacaccttaa tgaatctgta cagattaatt gtacaagacc     6480

caacaacaat acaagaaaaa gtatacattt aggaccagga cnagcatttt atgcaacagg     6540

agaaataata ggagacatna gaaaggcaca ttgtaacntt agtggaacac aatggaataa     6600

aactttagaa caggtaaagg caaagttaaa gtctcatttn cctaatacaa caataaaatt     6660

taactcatcc tcaggagggg acctagaaat tacaatgcat agttttaatt gtagaggaga     6720

atttttctac tgcaatacat caggactgtt taatgacaca ggantacaat ggcactatca     6780

ctctcccatg tcgaataaaa caaattgtaa acatgtggca ggaagtagga cgagcaatgt     6840

atgccgctcc cattgcagga aacattacct gtaactcaaa tattacaggt ctactattga     6900

caagagatgg tggtnanaat aatantaaga ctgagacctt cagacctggg ggaggaaata     6960

tgaaagacaa ttggagaagt gaantatata antataaagt agtagaaatt gaaccactag     7020

gagtagcacc caccanggca aaaagacaag tggtgaagag agaaanaaga gcagtgggaa     7080

taggagcttt gttccttggg ttcttgngcg cagcaggaag cactatgggc gcggcgtcaa     7140

taacgctgac ggtacaggcc agacaattat tgtctggaat agtgcaacag cagancaatc     7200

tgctgagggc tattgaagcg caacagcatc tgttgcagct cacagtctgg ggcattaaac     7260

agctccaggc aagagtcctg gctgtggaaa gatacctaaa ggatcaacag ctcctagggc     7320

tttggggctg ctctggaaaa ctcatctgca ccactaatgt gccctggaac tctagttgga     7380

gtaataaatc tcaggaggag atttggnaga acatgacctg gatggagtgg gaaaaagaga     7440

ttagcaatta ctcaaacnaa atatacaggt taattgaaga atcncagaac cagcaggaaa     7500

agaatgaaca agaattattg gcattggaca aatgggcaag tctgtggaat tggtttgaca     7560

tatcaaactg gctgtggtat ataaaaatat tcataatgat agtaggaggc ttgataggct     7620

taagaatagt ttttgctgtg ctttctatag taaatagagt taggaaggga tactcacctt     7680

tgtcattaca gacccntatc ccaagcccga gggaacccga caggcccgaa ggaatcgaag     7740

aaggaggtgg agagcaaggc aaagacagat ccgtgcgatt agtgaacgga ttcttagctc     7800

ttgtctggga cgacctgagg aacctgtgcc tcttcagcta ccgccacttg agagacttca     7860

tattaattgc agcgaggatt gtggacaggg ggctgaggag ggggtgggaa gccctcaaat     7920

atctggggaa tctcacncag tattggngtc aggaactaaa gaatagtgct attagcttgn     7980

ttaataccac agcaatagta gtagctgagg gnacagatag anttatagaa gctttgcaaa     8040

gagctggtag agctnttctc aacataccta gaagaataag acagggctta gaaagggctt     8100

tgctataaaa tgggtggcaa gtggtcaaaa agtagtatag ttggatggcc tgctataagg     8160

gaaagaatga gacgaaccnn nnnnncncct ccagcagcag aaggggtggg agcagtgtct     8220

caagacttag aaagacgggg ggcaattaca agcagcaata ctagagctan taatcctgac     8280

ttggcctggc tggaagcaca agaggangag gaagtaggct ttccagtcag acctcaggta     8340

cctttaagac caatgactta taaggcagct ntagatctca gncacttttt aaaagaaaag     8400

gggggactgg aagggttaat ttactccaag aaaagacaag agatccttga tctgtgggtn     8460

taccacacac aaggctnctt ccctgattgg cagaactaca caccagggcc agggntcaga     8520

tatccactga cctttgggtg gtgcttcaag ctagtaccag ttgacccaga ggaggtagaa     8580

aaggccaatg aaggagagaa caactgcttg ctacacccca tgagccaaca tggaatggan     8640

gatgaagaca gagaagtact ganntggaag tttgacagcn gcctggcact gagacacata     8700

gccagagaga nacatccgga gttctaccaa gactgagact gctgacacag agattgctga     8760

cacagaagaa tctaaaggga ctttccactg gggactttcc agagggcggg ccagagggcg     8820

ggactgggga gtggctcacc ctcagatgct gcatataagc agccgctttt cgcctgtact     8880

gggtctctct agttagacca gatttgagcc cgggagctct ctggctagct agggaaccca     8940

ctgcttaann nnnnnnnnnn nnnnnnnnnn nnnnnn                               8976


<210> 9
<211> 8574
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (44)..(44)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (93)..(93)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (174)..(175)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (196)..(196)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (236)..(237)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (244)..(244)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (252)..(252)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (272)..(272)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (280)..(280)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (332)..(332)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (350)..(350)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (645)..(645)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (672)..(672)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (945)..(945)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (999)..(999)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1093)..(1093)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1097)..(1097)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1103)..(1103)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1145)..(1145)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1193)..(1193)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1269)..(1269)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1386)..(1386)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1430)..(1430)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1432)..(1432)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1445)..(1445)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1469)..(1469)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1476)..(1476)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1495)..(1495)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1563)..(1563)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1582)..(1582)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1632)..(1632)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1682)..(1682)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1845)..(1845)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1982)..(1982)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2132)..(2132)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2343)..(2343)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2414)..(2414)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2618)..(2618)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2630)..(2630)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2747)..(2747)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2750)..(2750)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2777)..(2777)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2812)..(2812)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2818)..(2818)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2861)..(2861)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2900)..(2900)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2930)..(2930)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2944)..(2944)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2966)..(2966)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3029)..(3029)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3041)..(3041)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3099)..(3099)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3140)..(3140)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3147)..(3147)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3334)..(3334)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3475)..(3475)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3692)..(3692)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3704)..(3704)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3908)..(3908)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3917)..(3917)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4077)..(4077)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4125)..(4125)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4223)..(4223)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4305)..(4305)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4438)..(4438)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4567)..(4567)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4620)..(4620)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4641)..(4641)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4710)..(4710)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4781)..(4781)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4859)..(4859)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4945)..(4945)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5022)..(5022)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5035)..(5035)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5103)..(5103)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5134)..(5134)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5200)..(5200)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5203)..(5203)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5215)..(5215)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5218)..(5218)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5236)..(5236)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5276)..(5276)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5294)..(5294)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5304)..(5304)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5671)..(5671)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5770)..(5770)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5783)..(5783)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5803)..(5803)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5809)..(5809)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5829)..(5829)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5831)..(5831)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5849)..(5849)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5856)..(5856)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5872)..(5872)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5905)..(5905)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5945)..(5945)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5955)..(5955)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5974)..(5974)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5991)..(5991)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6090)..(6090)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6227)..(6227)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6254)..(6254)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6263)..(6263)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6291)..(6291)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6307)..(6307)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6336)..(6336)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6360)..(6360)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6363)..(6363)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6367)..(6367)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6407)..(6407)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6414)..(6414)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6450)..(6450)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6458)..(6458)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6464)..(6464)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6483)..(6483)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6485)..(6485)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6488)..(6488)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6491)..(6491)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6517)..(6517)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6524)..(6524)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6556)..(6556)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6580)..(6580)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6598)..(6600)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6603)..(6603)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6609)..(6609)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6614)..(6614)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6619)..(6620)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6622)..(6622)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6628)..(6628)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6655)..(6655)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6773)..(6774)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6776)..(6779)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6782)..(6783)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6787)..(6787)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6791)..(6791)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6793)..(6793)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6804)..(6805)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6938)..(6938)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6948)..(6948)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7051)..(7051)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7184)..(7184)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7264)..(7264)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7298)..(7298)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7300)..(7301)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7331)..(7331)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7335)..(7335)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7340)..(7340)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7388)..(7388)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7396)..(7396)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7413)..(7413)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7503)..(7503)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7514)..(7514)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7561)..(7561)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7577)..(7577)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7629)..(7629)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7631)..(7631)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7755)..(7755)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7836)..(7836)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7839)..(7839)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7855)..(7856)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7887)..(7887)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7890)..(7890)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7911)..(7911)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7945)..(7945)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8009)..(8009)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8011)..(8011)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8025)..(8025)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8029)..(8034)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8053)..(8054)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8104)..(8104)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8116)..(8116)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8133)..(8133)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8149)..(8151)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8207)..(8207)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8270)..(8270)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8521)..(8521)
<223> a, c, t, g, unknown or other

<400> 9
atgggtgcga gagcgtcagt attaagcggg ggaaaattag atgnatggga aaaaattcgg       60

ttaaggccgg gggggaagaa aaaatatagg ctnaaacata tagtatgggc aagcagggag      120

ctagaacgat ttgcacttaa tcctggcctt ttagagacaa cagaaggctg taannaaata      180

ataggacaac tacaancatc ccttcagaca ggatcagaag agcttaaatc attatnnaac      240

acantagtag tnctctatta tgtacatcaa angatagaan taagagacac caaggaagct      300

ttagataagc tacaggaaga acaagacaaa antcagcaaa aaacacaacn agcagcggct      360

gacaaagggg tcagtcaaaa ttaccctata gtacagaatc ttcaggggca aatggtacac      420

caggctctat cacctagaac tttaaatgca tgggtaaaag taatagaaga gaaggctttc      480

agcccagaag taatacccat gttttcagca ttatcagaag gggccacccc acaagattta      540

aacaccatgc taaacacagt ggggggacat caagcagcca tgcaaatgtt aaaagatacc      600

atcaatgagg aagctgcaga atgggacagg ttacatccag tgcangcagg acctatccca      660

ccaggtcaga tnagagaacc taggggaagt gatatagcag gaactactag tacccttcag      720

gaacaaatag catggatgac aagcaaccca cctgtcccag taggagaaat ctataaaaga      780

tggataatcc taggattaaa taaaatagta agaatgtata gccctgtcag cattttggac      840

ataaaacaag ggccaaaaga accctttaga gactatgtag acaggttctt taaaactcta      900

agagctgagc aagctacaca ggaagtaaaa ggctggatga caganacctt gttggtccaa      960

aatgcgaacc cagattgtaa gaccatttta aaagcattng gaccaggggc tacactagaa     1020

gaaatgatga cagcatgtca gggagtggga ggacctggcc ataaagcaag aattttggct     1080

gaggcaatga gcnaagnaac agntacagcc ataatgatgc agaaaagcaa ctttaagggc     1140

caaanaagaa ttgttaagtg tttcaactgt ggcaaagaag gacatatagc tanaaattgc     1200

agggccccta gaaaaagggg ctgttggaaa tgtggaaagg aaggacacca aatgaaagac     1260

tgcactgana gacaggctaa ttttttaggg aaaatttggc cttccaacaa ggggaggcct     1320

ggaaattttc ttcagaacag accagagcca acagccccgc cagcagagag cttcgggttc     1380

ggagangaga taactccctc cccgaagcag gagcagaaag acaaggaacn gnatcctccc     1440

ttganttccc tcaaatcact ctttggcanc gacccntagt cacaataaaa gtagnggggc     1500

aactaaggga ggctctatta gatacagggg cagatgatac agtattagaa gatataaatt     1560

tgncaggaaa atggaaacca anaatgatag ggggaattgg aggttttatc aaagtaagac     1620

agtatgatca antacccata gaaatttgtg gacaaaaggc tataggtaca gtattagtag     1680

gncctacgcc tgtcaacata attggaagaa atatgttgac tcagattggt tgcactttaa     1740

attttccaat tagtcctatt gaaactgtac cagtaaaatt aaagccagga atggatggcc     1800

caaaggttaa acaatggcca ttgacagaag aaaaaataaa agcantaaca gaaatctgta     1860

cagagatgga aaaagaagga aaaatttcaa aaattgggcc agaaaatcca tacaatactc     1920

cagtatttgc cataaagaaa aaggacagta ctaaatggag aaaattagta gatttcagag     1980

ancttaataa aagaactcaa gatttttggg aggttcaatt aggaatacca caccctgcag     2040

ggttaaaaaa gaaaaaatca gtaacagtac tggatgtggg ggatgcatat ttttcagttc     2100

ccttagataa ggagttcagg aagtacactg cnttcaccat acctagtatc aacaatgaga     2160

caccaggaat tagatatcag tacaatgtgc ttccacaggg atggaaaggg tcaccagcaa     2220

tattccaaag tagcatgaca aaaatcttag agccctttag agcaaaaaat ccagaaatag     2280

ttatctacca atacatggat gatttgtatg tagggtctga cttagaaata gggcagcata     2340

ggncaaaaat agaggagtta agagaacatc tattgagatg gggatttact acaccagata     2400

aaaaacatca gaangaaccc ccatttcttt ggatggggta tgaactccat cctgacaaat     2460

ggacagtaca ggctatacaa ttgccagaca agagcagctg gactgtcaat gatatacaga     2520

agttagtggg aaaactaaat tgggcaagtc agatttatcc agggattaga gtaaagcact     2580

tatgtaaact ccttagggga gccaaagcac taacagangt agtgccactn actgcagaag     2640

cagagttaga actggcagag aacagggaaa ttctaaaaga accagtacat ggggtatatt     2700

atgacccatc aaaagattta atagcagaaa tacagaaaca agggcangan caatggacat     2760

atcaaattta tcaagancca cataaaaatc tgaaaacagg aaagtatgca anaaggangt     2820

ctgcccacac taatgatgta aaacaattaa cagaagtagt ncaaaaaata gccacagaag     2880

gcatagtaat atggggaaan gttcctaaat ttagactacc catacaaaan gaaacatggg     2940

aaanatggtg gacagagtat tggcangcca cctggattcc tgaatgggag tttgtcaata     3000

cccctcctct agtaaaatta tggtaccant tagaaacaga ncccataata ggagcagaaa     3060

ctttctatgt agatggggca gctaatagag agactaaant aggaaaagca ggatatgtta     3120

ctgacagagg aagacaaaan gttgtcnccc taactgagac aacaaatcag aagactgaat     3180

tacaagcaat tcatttagct ttgcaggact caggatcaga agtaaacata gtaacagact     3240

cacagtatgc attaggaatc attcaagcac acccagataa gagtgaatca gagttagtca     3300

accaaataat agagcaatta atacaaaagg aaanggtcta cctgtcatgg gtaccagcac     3360

ataaagggat tggaggaaat gaacaagtag ataaattagt cagtactgga atcaggaaag     3420

tactgttttt ggatgggata gataaggctc aagaagaaca tgaaaaatat cacancaatt     3480

ggagagcaat ggctagtgat tttaatctgc cacctgtagt agcaaaagaa atagtagcca     3540

gctgtgataa atgtcagcta aaaggggaag ccatgcatgg acaagtagac tgcagtccag     3600

ggatatggca attagattgt acacatttag aaggaaaaat tatcctggta gcagtccatg     3660

tagctagtgg ctatatagaa gcagaagtta tnccagcaga aacnggacag gaaacagcct     3720

acttcatact aaagttagca ggaagatggc cagtaaaaat aatacataca gacaatggca     3780

gcaatttcac cagtactgtg gttaaggcag cctgttggtg ggcaggtatc cagcaggaat     3840

ttggaattcc ctacaatccc caaagtcaag gagtagtaga atctatgaat aaagaattaa     3900

agaaaatnat aggacangta agagatcaag ctgaacatct taagacagca gtgcaaatgg     3960

cagtattcat tcacaatttt aaaagaaaag gggggattgg ggggtacagt gcaggggaaa     4020

gaataataga cataatagca acagacatac aaactaaaga attacaaaaa caaattncaa     4080

aaattcaaaa ttttcgggtt tatttcaggg acagcagaga cccantttgg aaaggaccag     4140

caaagctact ctggaaaggt gaaggggcag tagtcataca agacaataat gaaataaaag     4200

tagtaccaag aagaaaagca aanatcatta gggattatgg aaaacagatg gcaggtgatg     4260

attgtgtggc aggtagacag gatgaggatt agaacatgga acagnttagt aaaacaccat     4320

atgtatgttt caaggagagc taaaggatgg ttttatagac atcactatga aagcaggcat     4380

ccaagagtaa gttcagaagt acacatccca ctagaggatg attctaaatt agtaatanta     4440

acctattggg gtctacatac aggagaaaga gattggcatt tgggtcaagg agtctccata     4500

gaatggaggc agaaaaggta taggacacaa gtagaccctg gcttggcaga ccaactaatt     4560

catctgnatt attttgattg tttttcagaa tctgccataa ggaaagccat attaggacan     4620

agagttagtc ctaggtgtaa ntatcaagca ggacataaca aggtaggatc cctacaatat     4680

ttggcactaa cagcattaat aaccccaaan aagataaagc cgcctttgcc tagtgtcagg     4740

aaactagtag aggatagatg gaacaacccc cagaagacca ngggccacag agggagccat     4800

acaatgaatg gacactagag cttttagagg agcttaagca tgaagctgtt agacatttnc     4860

ctagggagtg gctccatggc ttaggacagc atatctataa cacctatggg gatacttggg     4920

agggagttga agctataata agganactgc aacaactact atttatccat ttcagaattg     4980

ggtgccatca tagcagaata ggcattattc gacaaagaag antaagaaat ggaantggta     5040

gatcctaaac tagatccctg gaaccatcca ggaagtcagc ctgagactcc ttgtaataaa     5100

tgntattgta aaaagtgttg ctttcattgc caantgtgct ttacaaggaa gggcttaggc     5160

atctcctatg gcaggaagaa gcggagacag cgacgaagan ctnctcaaag cagtnagnta     5220

catcaagatc ctgtancaaa gcagtaagta gtatatgtaa tgtcatcttt gctaanagta     5280

gtaatagcag catntatagt agcnctaata atagcaataa ttgtgtggac tatagtatat     5340

atagaatata agaaactgtt aaggcaaaaa agaataaata ggttatatga aagaataaga     5400

gaaagagcag aagacagtgg caatgagagt gagggagatg cagaggaatt ggcagcactt     5460

ggggaagtgg ggccttttat tcctggggat attaataatc tgtaatgctg cagataactt     5520

gtgggtcaca gtctattatg gagtacctgt gtggaaagaa gcaaccacta ctctattttg     5580

tgcatcagat gctaaagcat atgaaagaga ggtacataat gtctgggcta catatgcctg     5640

tgtacctaca gaccccaacc cacaagaatt ngttctggga aatgtaacag aaaattttaa     5700

catgtggaaa aataacatgg tagaccagat gcatgaagat ataatcagtt tatgggatca     5760

aagcctaaan ccatgtgtaa agntaacccc actctgtgtt acnttaaant gtactgatgt     5820

taatattanc ntcactaata acaataccnc tgatancatc accctggaag ancaagggga     5880

aataaaaaac tgttctttca atatnaccac agagataaaa gataagaaga aaaaagaata     5940

tgcanttttt tatanacttg atgtagtacc aatnaataat agtactacta natataggct     6000

aataagttgt aatacctcaa ccgttacaca ggcttgtcca aaggtgtcct ttgatccaat     6060

tcctatacat tattgtgctc ctgctggttn tgcgattcta aagtgtaatg ataaaaggtt     6120

caatgggaca gggttatgca ggaatgtcag cacagtacaa tgtacacatg gaattaaacc     6180

agtggtatca actcaactac tgttaaatgg cagcctagca gaagaanata taataattag     6240

atctgaaaat atcncagata atncaaaaac cataatagta cagtttaata natctgtaaa     6300

aattaantgt acaagaccca acaacaatac aagaanaagt atacgtatag gaccaggacn     6360

agnattntat gcaacaggtg agataatagg agatataaga aaggcanatt gtancattaa     6420

tggaacactg tggaatgaaa ctttaaaaan ggtagctnca gagntcaaaa accactttaa     6480

tanancanta ncatttgagc catcatcagg aggggancta gaanttacaa cacatagttt     6540

taattgtaga ggagantttt tctactgcaa cacaacagcn ctgtttaatg aaacaaannn     6600

tgnctaatnc aacnaagann anaaatgnca ctatcactct tccatgtaga ataanacaaa     6660

ttgtaaacat gtggcaaaga gtaggacgag caatgtatgc ccctcccatt gcaggaaaaa     6720

ttcagtgtaa ctcaaatatc acaggtctac tattgacaag agatggtggg aannannnna     6780

annaganaga nancctcaga cctnnagggg gagatatgag agacaattgg agaagtgaac     6840

tatataaata taaggtagta aaaattgaac cactaggagt agcacccacc aaggcaaaaa     6900

gacaagtggt gcagagagaa aaaagagcag tgggaatngg agctgtgntc cttgggttct     6960

tgggagcagc aggaagcact atgggcgcgg cgtcaataac gctgacggta caggccagac     7020

aattattgtc tggtatagtg caacagcaaa ncaatttgct gaaggctata gaagcgcaac     7080

agcatctgtt gcagctcaca gtctggggca ttaaacagct ccaggcgaga atcctggctg     7140

tggaaagata cctaaaggac caacagctcc tagggatttg gggntgctct ggaaaactca     7200

tctgcaccac taatgtgccc tggaattcta gttggagtaa taaatctcag gatgaaattt     7260

gggnaaacat gacctggatg cagtgggaaa aagagatngn naattacaca gacacaatat     7320

acagattaat ngaanatgcn caaaaccagc aggaaaagaa tgaacaggac ttattggcat     7380

tggacaantg ggacantctg tggagttggt ttnctataac aaactggttg tggtacataa     7440

aaatattcat aatgatagta ggaggcttga taggattaag aatagttttt gctgtgcttt     7500

ctntaataaa tagngttagg cagggatact cacctttgtc attacagacc cttatcccaa     7560

ncccgagggg acccganagg cccggaggaa tcgaagaaga aggtggagag caagacaaag     7620

acagatccnt nagattagtg agcggattct tagcacttgc ctgggacgac ctacggagcc     7680

tgtgcctctt cagctaccgc cacttgagag acttcatatt aattgcagcg aggactgtgg     7740

acaagggact gaaanggggg tgggaagtcc tcaaatatct gtggaatctc gcgcagtatt     7800

ggggtcggga actaaagaat agtgctatta gtctgnttna taccacagca atagnngtag     7860

ctgaagggac agatagaatc atagaanttn tgcaaagagc tggtagagct nttctccaca     7920

tacctagaag aataagacag ggtgntgaaa gggctttgct ataaaatggg tggcaagtgg     7980

tcaaaaagta gtatagttgg atggcctant ntaagggaaa gaatnagann nnnngcagca     8040

gaaggggtgg gannagtgtc tcaagactta gataaacatg gggcaattac aagcagcaat     8100

actngggcta ctaatnctga cttggcctgg ctngaagcgc aagaggatnn ngaagtaggt     8160

tttccagtca gacctcaggt acctttaaga ccaatgactt ataaggnagc tgtcgatctc     8220

agtcactttt taaaagaaaa ggggggactg gaagggttaa tttactccan gaaaagacaa     8280

gaaatccttg atctgtgggt ctaccacaca caaggctact tccctgattg gcagaactac     8340

acaccagggc cagggaccag atatccactg acctttggat ggtgcttcaa gctagtacca     8400

gttgatccag aggaggtaga aaaggccaat gaaggagaga acaactgttt gttacaccct     8460

atgagcctac atggaatgga ggatgaagac agggaagtgt taaagtggaa gtttgacagc     8520

ngcctagcac tgagacacat agccagagag agacatccgg agtactacaa agac           8574


<210> 10
<211> 9621
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (741)..(741)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (865)..(865)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (1428)..(1428)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2207)..(2207)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (2588)..(2588)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3458)..(3458)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3746)..(3746)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3974)..(3974)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (3983)..(3983)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4002)..(4002)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (4445)..(4445)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5259)..(5259)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5310)..(5310)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5340)..(5340)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (5900)..(5900)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6229)..(6229)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6410)..(6410)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6629)..(6629)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6631)..(6631)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6633)..(6634)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6636)..(6636)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6647)..(6647)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6651)..(6651)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6653)..(6654)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6769)..(6769)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6771)..(6772)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6779)..(6781)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (6783)..(6783)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7140)..(7140)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7142)..(7142)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7238)..(7238)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7252)..(7252)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7256)..(7256)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7264)..(7264)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7394)..(7394)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7397)..(7399)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7404)..(7407)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7409)..(7409)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (7566)..(7566)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8223)..(8223)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8515)..(8515)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8559)..(8559)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8858)..(8858)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8971)..(8971)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (8977)..(8977)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9014)..(9014)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9258)..(9258)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9313)..(9313)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9332)..(9332)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9393)..(9393)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9532)..(9532)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9576)..(9576)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9578)..(9578)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9584)..(9584)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9598)..(9598)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9617)..(9618)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (9620)..(9621)
<223> a, c, t, g, unknown or other

<400> 10
acttgaccta tgggctataa taccaaagga ttcttcccag attggcagaa ctacacacca       60

gggccaggga ctagattccc actgaccctt gggtggtgct tcaaactggt accaatggat      120

ccatcagagg tagaggaagc caataaagga gagaacaaca gtctattaca ccccatctgc      180

cagcatggaa tggaggacga agacagagaa gtgctggtgt ggaaatttga cagtagccta      240

gcacggagac acatagcccg agagctgcat ccggagtact acaaagactg ctgacacaga      300

agttgctgac aaggggactt tccgcctggg actttccagg ggaggcgcgg cctgggaggg      360

gctggggagt ggctaaccct cagaagctgc atataagcag ccgcttctcg cctgtactgg      420

gtctctcttg ttagaccaga tttgagcctg ggagctctct ggctagcagg ggaacccact      480

gcttagagcc tcaataaagc ttgccttgag tgcttcaagt agtgtgtgcc cgtctgttgt      540

gtgactctgg taactagaga tccctcagac cactctagat agtgtaaaaa tctctagcag      600

tggcgcccga acagggactt gaaagcgaaa gttaacaggg actcgaaagc gaaagttcca      660

gagaagttct ctcgacgcag gactcggctt gctgaggtgc acacagcaag aggcgagagc      720

ggcgactggt gagtacgcca naatttttga ctagcggagg ctagaaggag agagatgggt      780

gcgagagcgt cagtattaag cgggggaaaa ttagatgctt gggaaaaaat tcggttgagg      840

ccagggggaa agaaaaaata tagantgaaa catttagtat gggcaagcag ggagctggag      900

agatttgcac ttaaccctga ccttttagaa acagcagaag gttgtcagca aataatggga      960

cagttgcaac cagctctcca gacaggaaca gaggagatta gatcattatt taatacagta     1020

gcaaccctct attgtgtaca tcaaaagata gaggtaaaag acaccaaaga agctctagag     1080

gaagtggaaa agatacaaaa gaaaagtcag caaaaaatac agcaggcagc aatggatgaa     1140

ggaaacagca gccaagtcag ccaaaattat cctatagtgc agaatgcaca agggcaaatg     1200

gtacaccagg ccatatcacc tagaacttta aatgcatggg taaaagtagt agaagaaaag     1260

gccttcagtc cagaagtaat acccatgttt tcagcattat cagaaggagc caccccacaa     1320

gatttaaata ccatgctaaa cacagtgggg gggcatcaag cagctatgca aatgctaaag     1380

gatactatca atgaggaagc tgcagagtgg gacaggatac atccacanca ggcagggcct     1440

attccaccag gccagataag agaaccaagg ggaagtgata tagcaggaac tactagtacc     1500

ctgcaggaac aaataagatg gatgaccagc aacccaccta tcccagtggg agaaatttat     1560

aaaagatgga taatcctggg attaaataaa atagtaagaa tgtatagccc tgtcagcatt     1620

ttggacataa gacaagggcc aaaagaaccc tttagagatt atgtagatag gttctttaaa     1680

actttgagag ctgagcaagc tacacaggaa gtaaaaggct ggatgacaga caccttgttg     1740

gtccaaaatg cgaacccaga ttgtaagacc atcttaagag cattaggacc aggagctaca     1800

ctagaagaaa tgatgacagc atgtcaggga gtgggaggac ccagccataa agcaagagtt     1860

ttagctgagg caatgagcca ggcatcaggt gcagcagcag ccataatgat gcagaaaagc     1920

aattttaagg gcccaagaag aactattaag tgtttcaact gtggcaagga aggacatcta     1980

gccagaaatt gcagggcccc taggaaaaag ggctgttgga aatgtggaaa ggagggacat     2040

caaatgaaag actgcacaga gagacaggct aattttttag ggaaaatttg gccttccaac     2100

aaggggaggc cagggaattt tctccagaac aggccagagc caacagcccc acccgcagag     2160

agcttcgggt tcggagagga gatagccccc tccccgaagc aggagcngaa ggaaaaggag     2220

ctatatccct tagcctccct caaatcactc tttggcagcg acccctagtc acagtaaaaa     2280

tagggggaca gctaatagaa gccctattag acacaggagc agatgataca gtattagaag     2340

aaataaattt accaggaaaa tggaaaccaa aaatgatagg gggaattgga ggttttatca     2400

aagtaagaca gtatgatcaa atacttatag aaattagtgg aaaaaaggct atagggacag     2460

tattagtagg acctacacct atcaacataa ttgggagaaa tatgttgact cagattggtt     2520

gtactttaaa ttttccaatt agtcctattg aaactgtacc agtaaaatta aagccaggaa     2580

tggatggncc aagggttaaa caatggccat tgacagaaga gaaaataaaa gcattaacag     2640

aaatttgtaa agaaatggaa aaggaaggaa aaatttcaaa aattgggcct gaaaatccat     2700

acaacactcc aatatttgcc ataaagaaaa aagacagtac taaatggaga aaattggtag     2760

atttcagaga gctcaataaa agaactcaag acttctggga ggtccaatta ggaatacctc     2820

atcccgcggg gttaaaaaag aaaaaatcag taacagtact agatgtgggg gatgcatact     2880

tttcagttcc cttagatgaa aactttagaa agtatactgc attcactata cctagtacaa     2940

ataatgagac accagggatt agatatcagt acaatgtgct tccacaggga tggaaaggat     3000

caccagcaat atttcagagt agcatgacaa aaatcttaga gccctttaga acaaaaaatc     3060

cagaaatagt gatctaccaa tacatggatg atttatatgt aggatctgac ttagaaatag     3120

ggcagcatag agcaaaaata gaggagttaa gagaacatct attgagatgg ggatttacca     3180

caccagataa aaaacatcag aaagaacctc cattcctttg gatgggatat gagctccatc     3240

ctgacaaatg gacggtacaa cctatacagc tgccagacaa ggaaagctgg actgtcaatg     3300

atatacaaaa gttagtggga aaactaaatt gggcaagtca gatttatcca gggattaaag     3360

taaagcaact atgtaaactc cttagggggg ccaaagcact aacagacata gtaccactga     3420

ctgcagaagc agaaatggaa ttggcagaga acaggganat tctaaaagaa cctgtacatg     3480

gagtctatta tgacccatca aaagaattaa tagcagaagt acagaaacaa gggctagacc     3540

aatggacata tcaaatttat caagagccat acaaaaatct gaaaacagga aaatatgcaa     3600

aaagggggtc tgcccacact aatgatgtaa aacaattaac agaagtagtg caaaaaatag     3660

ccacagagag catagtaata tggggaaaga ctcctaaatt taaactacct atacgaaaag     3720

aaacatggga agtatggtgg acagantatt ggcaggccac ctggattcct gagtgggagt     3780

ttgtcaatac ccctcctcta gtaaaattat ggtatcggtt agaaacagaa cccataccag     3840

gagcagaaac ttactatgta gatggggcag ctaataggga gacaaaatta ggaaaggcag     3900

gatatgttac tgacaaagga aaacaaaaaa ttattaccct aactgaaaca acaaaccaaa     3960

aggctgaatt acangcaatt canctagctt tgcaggactc angatcagaa gtaaacatag     4020

taacagactc acagtatgca ttaggaatca ttcaagcaca accagatagg agtgaatcag     4080

aattagtcaa tcaaataata gaacagctaa taaaaaagga aaaggtctac ctgtcatggg     4140

taccagcaca caaagggatt ggaggaaatg aacaagtaga taaattagtc agtagtggaa     4200

tcaggaaagt attattttta gatggcatag ataaagccca agaagaccat gaaagatatc     4260

acagcaattg gagagcaatg gctagtgatt ttaatctgcc acctatagta gcaaaagaaa     4320

tagtggccag ctgtgataaa tgtcagctaa aaggggaagc catgcatgga caagtagact     4380

gtagtccagg aatatggcaa ttagattgta cacatttaga aggaaaaatt atcctggtag     4440

cagtncatgt agccagtggc tatatagaag cagaagttat cccagcagaa acaggacagg     4500

aaacagcata ctttatatta aaattagcag gaaggtggcc agtaaaagta atacatacag     4560

acaatggcag caatttcacc agtgctgcag taaaggcagc atgttggtgg gcaaatatca     4620

cacaggaatt tggaattccc tacaatcccc aaagccaagg agtagtggaa tctatgaata     4680

aggaattaaa gaaaatcatc gggcaggtca gggatcaagc tgaacatctt aagacagcag     4740

tacagatggc agtattcatt cacaatttta aaagaaaagg ggggattggg gggtacagtg     4800

caggggaaag aataatagac ataatagcat cagatataca aactaaagaa ctacaaaaac     4860

aaattacaaa aattcaaaat tttcgggttt attacaggga cagcagagac ccaatttgga     4920

aaggaccagc aaagctactc tggaaaggtg aaggggcagt agtaatacaa gacaataacg     4980

aaataaaggt agtaccaaga agaaaagcaa agatcattag ggattatgga aaacagatgg     5040

caggtgatga ttgtgtggca ggtagacagg atgaggatta gaacatggaa cagtttagta     5100

aaacatcata tgtatgtctc aaagaaagct aaaggctggt tttatagaca tcactatgaa     5160

agcaggcatc caaaagtaag ttcagaagta cacatcccac taggagatgc tacactagta     5220

gtaagaacat attggggtct gcatacagga gaaaaagant ggcaattggg tcatggggtc     5280

tccatagaat ggaggcagag aagatatagn acacaaatag atcctgacct agcagaccan     5340

ctgattcatc tgcattattt tgactgtttt tcagaatctg ccataaggaa agccatatta     5400

ggaaaaatag ttagtcctag gtgtgaatat caagcaggac ataataaggt aggatctcta     5460

caatatttgg cattgaaagc attagtaaca ccaacaagga caaggccacc tttgcctagt     5520

gttaggaaat taacagaaga tagatggaac aagccccaga agaccagggg ccacagagag     5580

aaccctacaa tgaatgggca ttagaactgt tagaagagct taaaaatgaa gctgttagac     5640

attttcctag gccctggctc catggcttag gacagtatat ctataacact tatggggata     5700

cttgggaagg agttgaagcc ataataagaa tactacaaca actactgttt atccatttca     5760

gaattgggtg ccaacatagc agaataggca ttactccaca gagaagagta agggatggac     5820

ccggtagatc ctaacctaga gccctggaat catccgggga gtcagcctaa aactccctgt     5880

aacaactgct attgtaaaan gtgttgctgg cattgccaag tttgctttct gaacaaaggc     5940

ttaggcatct cctatggcag gaagaagcgg aagcaccgac gaggaactcc tcagagcagt     6000

aaggatcatc aaaatcctgt accaaagcag taagtagtaa taattagtat atgtaatgca     6060

accattagaa atatctgcaa tagtaggact aatagtagca ttcatagcag ccataattgt     6120

gtggactata gtatttatag aatataggga aataagaaaa cagaaaaaaa tagaaaagtt     6180

acttgataga ataagagaaa gagcagaaga cagtggaaat gagagtgang gggatacaga     6240

ggaattggca acacttatgg aaatggggga ctttgatcct tgggttggtg ataatttgta     6300

gtgcctcaaa taacttgtgg gtcacagtct attatggggt acctgtgtgg gaagatgcaa     6360

ataccactct attttgtgca tctgatgcta aagcatatag tactgaaagn cataatgtct     6420

gggctacaca tgcctgtgta cccacagacc ccaacccaca agaaatacct atggaaaatg     6480

taacagaaaa ttttaacatg tggaaaaata acatggtaga acagatgcat gaggatataa     6540

tcagtttatg ggatgaaagc ctaaagccat gtgtaaagct aacccctctc tgtgttactt     6600

taaactgtac taatgtaacc aacaatagna ntnntnaaca ataacantat ngnngacaaa     6660

gaagaaataa aaaactgctc tttcaatata accacagaaa taagagataa gaagaagcaa     6720

gaatacgcgc ttttctatag acttgatgta gtaccaatta atgataatnt nnagtaatnn     6780

nantaattat aggctaataa attgtaatgt ctcaaccatt aaacaggctt gtccaaaggt     6840

aacttttgac ccaattccca tacattattg tgctccagct ggttttgcga ttttaaagtg     6900

tagggataag gagttcaatg gaacaggacc atgtaaaaat gtcagtacag tacaatgtac     6960

acatggaatt aagccagtgg tatcaactca actactgctg aatggcagtt tagcagaaga     7020

agaaataata attagatctg aaaatatcac agacaatacc aaagtcataa tagtgcagct     7080

taatgaaact atagaaatta attgtatcag acccaacaac aatacaagaa aaagtataan     7140

antcggacca ggacaagcgt tctatgcaac aggtgacata ataggagaca taagacaagc     7200

acattgtaat gttagtagaa caaaatggaa taagatgnta aagaatgtca cngcanaact     7260

aaanaaaatc tttaataaca agaacataac ctttaactca tctgcaggag gggacctaga     7320

aattacaaca catagtttca attgtagagg agaatttttc tattgtaata catcaggact     7380

gtttaataat agtntgnnng tagnnnnant aatagtaata atgagactat cacactccca     7440

tgtaaaataa aacaaattgt gagaatgtgg cagagagtgg gacaagcaat gtatgcccct     7500

cccatcgcag gaaacattac atgtaaatca aacattacag gactaatatt aacaagagat     7560

ggtggnaata ataatacaag tgcgactgag atcttcagac ctggaggagg agatatgaag     7620

gacaattgga gaagtgaatt atataagtat aaaacagtaa aaatcaaatc actaggagta     7680

gcacccacca gggcaaggag aagagtggtg gagagagaaa aaagagcagt tggactggga     7740

gctgtcttcc ttgggttctt aggagcagca ggaagcacta tgggcgcggc gtcaataacg     7800

ctgacggtac aggtcagaca attattgtct ggcatagtgc aacagcaaag caatttgctg     7860

agggctatag aggcgcagca gcatctgttg caactcacag tctggggcat taaacagctc     7920

caggcaagag tcctggctgt ggaaagatac ctaaaggatc aacagctcct agggatttgg     7980

ggctgctctg gaaaactcat ctgcaccact aatgtgccct ggaacgctag ttggagtaat     8040

aaatcttata atgaaatttg ggataacatg acttggatag aatgggaaag ggaaattaac     8100

aattacacac aacaaatata cagcctaatt gaagaatcgc agaaccagca ggaaaagaat     8160

gaacaagact tattggcatt ggacaagtgg gcaagtttgt ggaattggtt tgacatatca     8220

aantggctat ggtatataaa aatatttata atgatagtag gaggtttaat aggtttaaga     8280

atagtttttg ctgtgctttc tatagtaaat agagttaggc agggatactc acctttgtca     8340

ttccagaccc ttacccacca ccagagggaa cccgacaggc ccggaagaat cgaagaagaa     8400

ggtggagagc aagacaaaga cagatccatt cgattagtga gcggattctt agcgcttgcc     8460

tgggacgacc tgcggagcct gtgcctcttc agctaccacc gcttgagaga cttcntcttg     8520

attgcagcga ggacagtgga acttctggga cgcagcagnc tcaagggact gagactgggg     8580

tgggaaggcc tcaaatattt gtggaatctt ctgttgtatt ggggtcggga actaaagaat     8640

agtgctatta atttgcttga tacaatagca atagcagtag ctaactggac agatagggtt     8700

atagaagtag cacaaagagc tggtagagct attctcaaca tacctacaag aataagacaa     8760

ggcttagaaa gagctttgct ataaaatggg aggcaagtgg tcaaaaagta gcatagttgg     8820

atggcctgag gtaagggaaa gaataagaca aacccctnca gcagcagaag gagtaggagc     8880

agtatctcaa gatttagcta ggcatggagc aatcacaagc agcaatacag cagccaataa     8940

tcctgattgt gcctggctgg aagcacaaga ngaggantca gaggtaggct ttccagtcag     9000

accacaggta cctntgagac caatgactta taaggctgct tttgatctca gcttcttttt     9060

aaaagaaaag gggggactgg atgggctaat ttactccaag aaaagacaag acatccttga     9120

cctgtgggtc tataatacac aaggattctt cccagattgg cagaactaca caccagggcc     9180

agggactaga ttcccactga cctttgggtg gtgcttcaaa ctagtaccaa tggatccagc     9240

agaggtagag gaagccanta aaggagagaa caacagtcta ttacacccca tctgccagca     9300

tggaatggag gangaagaca gagaagtgct gntatggaga tttgacagta gcctagcacg     9360

gagacacata gcccgagagc tgcatccgga gtnctacaaa gactgctgac acagaagttg     9420

ctgacaaagg gactttccgc ctgggacttt ccggggaggc gcggcctggg aggggctggg     9480

gagtggctaa ccctcagaag ctgcatataa gcagccgctt ctcgcctgta cngggtctct     9540

cttgttgacc agatttgagc ctgggagctc tctggntngc aggngaacca ctgcttangc     9600

ctcaataaag cttgccnngn n                                               9621


<210> 11
<211> 9181
<212> DNA
<213> Human immunodeficiency virus

<400> 11
ggtctctctg gttagaccag atctgagcct gggagctctc tggctaacta gggaacccac       60

tgcttaagcc tcaataaagc ttgccttgag tgcttcaagt agtgtgtgcc cgtctgttgt      120

gtgactctgg taactagaga tccctcagac ccttttagtc agtgtggaaa atctctagca      180

gtggcgcccg aacagggacc tgaaagcgaa agggaaacca gaggagctct ctcgacgcag      240

gactcggctt gctgaagcgc gcacggcaag aggcgagggg cggcgactgg tgagtacgcc      300

aaaaattttg actagcggag gctagaagga gagagatggg tgcgagagcg tcagtattaa      360

gcgggggaga attagatcga tgggaaaaaa ttcggttaag gccaggggga aagaaaaaat      420

ataaattaaa acatatagta tgggcaagca gggagctaga acgattcgca gttaatcctg      480

gcctgttaga aacatcagaa ggctgtagac aaatactggg acagctacaa ccatcccttc      540

agacaggatc agaagaactt agatcattat ataatacagt agcaaccctc tattgtgtgc      600

atcaaaggat agagataaaa gacaccaagg aagctttaga caagatagag gaagagcaaa      660

acaaaagtaa gaaaaaagca cagcaagcag cagctgacac aggacacagc aatcaggtca      720

gccaaaatta ccctatagtg cagaacatcc aggggcaaat ggtacatcag gccatatcac      780

ctagaacttt aaatgcatgg gtaaaagtag tagaagagaa ggctttcagc ccagaagtga      840

tacccatgtt ttcagcatta tcagaaggag ccaccccaca agatttaaac accatgctaa      900

acacagtggg gggacatcaa gcagccatgc aaatgttaaa agagaccatc aatgaggaag      960

ctgcagaatg ggatagagtg catccagtgc atgcagggcc tattgcacca ggccagatga     1020

gagaaccaag gggaagtgac atagcaggaa ctactagtac ccttcaggaa caaataggat     1080

ggatgacaaa taatccacct atcccagtag gagaaattta taaaagatgg ataatcctgg     1140

gattaaataa aatagtaaga atgtatagcc ctaccagcat tctggacata agacaaggac     1200

caaaggaacc ctttagagac tatgtagacc ggttctataa aactctaaga gccgagcaag     1260

cttcacagga ggtaaaaaat tggatgacag aaaccttgtt ggtccaaaat gcgaacccag     1320

attgtaagac tattttaaaa gcattgggac cagcggctac actagaagaa atgatgacag     1380

catgtcaggg agtaggagga cccggccata aggcaagagt tttggctgaa gcaatgagcc     1440

aagtaacaaa ttcagctacc ataatgatgc agagaggcaa ttttaggaac caaagaaaga     1500

ttgttaagtg tttcaattgt ggcaaagaag ggcacacagc cagaaattgc agggccccta     1560

ggaaaaaggg ctgttggaaa tgtggaaagg aaggacacca aatgaaagat tgtactgaga     1620

gacaggctaa ttttttaggg aagatctggc cttcctacaa gggaaggcca gggaattttc     1680

ttcagagcag accagagcca acagccccac cagaagagag cttcaggtct ggggtagaga     1740

caacaactcc ccctcagaag caggagccga tagacaagga actgtatcct ttaacttccc     1800

tcaggtcact ctttggcaac gacccctcgt cacaataaag ataggggggc aactaaagga     1860

agctctatta gatacaggag cagatgatac agtattagaa gaaatgagtt tgccaggaag     1920

atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac agtatgatca     1980

gatactcata gaaatctgtg gacataaagc tataggtaca gtattagtag gacctacacc     2040

tgtcaacata attggaagaa atctgttgac tcagattggt tgcactttaa attttcccat     2100

tagccctatt gagactgtac cagtaaaatt aaagccagga atggatggcc caaaagttaa     2160

acaatggcca ttgacagaag aaaaaataaa agcattagta gaaatttgta cagagatgga     2220

aaaggaaggg aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc     2280

cataaagaaa aaagacagta ctaaatggag aaaattagta gatttcagag aacttaataa     2340

gagaactcaa gacttctggg aagttcaatt aggaatacca catcccgcag ggttaaaaaa     2400

gaaaaaatca gtaacagtac tggatgtggg tgatgcatat ttttcagttc ccttagatga     2460

agacttcagg aagtatactg catttaccat acctagtata aacaatgaga caccagggat     2520

tagatatcag tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tattccaaag     2580

tagcatgaca aaaatcttag agccttttag aaaacaaaat ccagacatag ttatctatca     2640

atacatggat gatttgtatg taggatctga cttagaaata gggcagcata gaacaaaaat     2700

agaggagctg agacaacatc tgttgaggtg gggacttacc acaccagaca aaaaacatca     2760

gaaagaacct ccattccttt ggatgggtta tgaactccat cctgataaat ggacagtaca     2820

gcctatagtg ctgccagaaa aagacagctg gactgtcaat gacatacaga agttagtggg     2880

gaaattgaat tgggcaagtc agatttaccc agggattaaa gtaaggcaat tatgtaaact     2940

ccttagagga accaaagcac taacagaagt aataccacta acagaagaag cagagctaga     3000

actggcagaa aacagagaga ttctaaaaga accagtacat ggagtgtatt atgacccatc     3060

aaaagactta atagcagaaa tacagaagca ggggcaaggc caatggacat atcaaattta     3120

tcaagagcca tttaaaaatc tgaaaacagg aaaatatgca agaatgaggg gtgcccacac     3180

taatgatgta aaacaattaa cagaggcagt gcaaaaaata accacagaaa gcatagtaat     3240

atggggaaag actcctaaat ttaaactgcc catacaaaag gaaacatggg aaacatggtg     3300

gacagagtat tggcaagcca cctggattcc tgagtgggag tttgttaata cccctccctt     3360

agtgaaatta tggtaccagt tagagaaaga acccatagta ggagcagaaa ccttctatgt     3420

agatggggca gctaacaggg agactaaatt aggaaaagca ggatatgtta ctaatagagg     3480

aagacaaaaa gttgtcaccc taactgacac aacaaatcag aagactgagt tacaagcaat     3540

ttatctagct ttgcaggatt cgggattaga agtaaacata gtaacagact cacaatatgc     3600

attaggaatc attcaagcac aaccagatca aagtgaatca gagttagtca atcaaataat     3660

agagcagtta ataaaaaagg aaaaggtcta tctggcatgg gtaccagcac acaaaggaat     3720

tggaggaaat gaacaagtag ataaattagt cagtgctgga atcaggaaag tactattttt     3780

agatggaata gataaggccc aagatgaaca tgagaaatat cacagtaatt ggagagcaat     3840

ggctagtgat tttaacctgc cacctgtagt agcaaaagaa atagtagcca gctgtgataa     3900

atgtcagcta aaaggagaag ccatgcatgg acaagtagac tgtagtccag gaatatggca     3960

actagattgt acacatttag aaggaaaagt tatcctggta gcagttcatg tagccagtgg     4020

atatatagaa gcagaagtta ttccagcaga aacagggcag gaaacagcat attttctttt     4080

aaaattagca ggaagatggc cagtaaaaac aatacatact gacaatggca gcaatttcac     4140

cggtgctacg gttagggccg cctgttggtg ggcgggaatc aagcaggaat ttggaattcc     4200

ctacaatccc caaagtcaag gagtagtaga atctatgaat aaagaattaa agaaaattat     4260

aggacaggta agagatcagg ctgaacatct taagacagca gtacaaatgg cagtattcat     4320

ccacaatttt aaaagaaaag gggggattgg ggggtacagt gcaggggaaa gaatagtaga     4380

cataatagca acagacatac aaactaaaga attacaaaaa caaattacaa aaattcaaaa     4440

ttttcgggtt tattacaggg acagcagaaa tccactttgg aaaggaccag caaagctcct     4500

ctggaaaggt gaaggggcag tagtaataca agataatagt gacataaaag tagtgccaag     4560

aagaaaagca aagatcatta gggattatgg aaaacagatg gcaggtgatg attgtgtggc     4620

aagtagacag gatgaggatt agaacatgga aaagtttagt aaaacaccat atgtatgttt     4680

cagggaaagc taggggatgg ttttatagac atcactatga aagccctcat ccaagaataa     4740

gttcagaagt acacatccca ctaggggatg ctagattggt aataacaaca tattggggtc     4800

tgcatacagg agaaagagac tggcatttgg gtcagggagt ctccatagaa tggaggaaaa     4860

agagatatag cacacaagta gaccctgaac tagcagacca actaattcat ctgtattact     4920

ttgactgttt ttcagactct gctataagaa aggccttatt aggacacata gttagcccta     4980

ggtgtgaata tcaagcagga cataacaagg taggatctct acaatacttg gcactagcag     5040

cattaataac accaaaaaag ataaagccac ctttgcctag tgttacgaaa ctgacagagg     5100

atagatggaa caagccccag aagaccaagg gccacagagg gagccacaca atgaatggac     5160

actagagctt ttagaggagc ttaagaatga agctgttaga cattttccta ggatttggct     5220

ccatggctta gggcaacata tctatgaaac ttatggggat acttgggcag gagtggaagc     5280

cataataaga attctgcaac aactgctgtt tatccatttt cagaattggg tgtcgacata     5340

gcagaatagg cgttactcga cagaggagag caagaaatgg agccagtaga tcctagacta     5400

gagccctgga agcatccagg aagtcagcct aaaactgctt gtaccaattg ctattgtaaa     5460

aagtgttgct ttcattgcca agtttgtttc ataacaaaag ccttaggcat ctcctatggc     5520

aggaagaagc ggagacagcg acgaagagct catcagaaca gtcagactca tcaagcttct     5580

ctatcaaagc agtaagtagt acatgtaatg caacctatac caatagtagc aatagtagca     5640

ttagtagtag caataataat agcaatagtt gtgtggtcca tagtaatcat agaatatagg     5700

aaaatattaa gacaaagaaa aatagacagg ttaattgata gactaataga aagagcagaa     5760

gacagtggca atgagagtga aggagaaata tcagcacttg tggagatggg ggtggagatg     5820

gggcaccatg ctccttggga tgttgatgat ctgtagtgct acagaaaaat tgtgggtcac     5880

agtctattat ggggtacctg tgtggaagga agcaaccacc actctatttt gtgcatcaga     5940

tgctaaagca tatgatacag aggtacataa tgtttgggcc acacatgcct gtgtacccac     6000

agaccccaac ccacaagaag tagtattggt aaatgtgaca gaaaatttta acatgtggaa     6060

aaatgacatg gtagaacaga tgcatgagga tataatcagt ttatgggatc aaagcctaaa     6120

gccatgtgta aaattaaccc cactctgtgt tagtttaaag tgcactgatt tgaagaatga     6180

tactaatacc aatagtagta gcgggagaat gataatggag aaaggagaga taaaaaactg     6240

ctctttcaat atcagcacaa gcataagagg taaggtgcag aaagaatatg cattttttta     6300

taaacttgat ataataccaa tagataatga tactaccagc tataagttga caagttgtaa     6360

cacctcagtc attacacagg cctgtccaaa ggtatccttt gagccaattc ccatacatta     6420

ttgtgccccg gctggttttg cgattctaaa atgtaataat aagacgttca atggaacagg     6480

accatgtaca aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac     6540

tcaactgctg ttaaatggca gtctagcaga agaagaggta gtaattagat ctgtcaattt     6600

cacggacaat gctaaaacca taatagtaca gctgaacaca tctgtagaaa ttaattgtac     6660

aagacccaac aacaatacaa gaaaaagaat ccgtatccag agaggaccag ggagagcatt     6720

tgttacaata ggaaaaatag gaaatatgag acaagcacat tgtaacatta gtagagcaaa     6780

atggaataac actttaaaac agatagctag caaattaaga gaacaatttg gaaataataa     6840

aacaataatc tttaagcaat cctcaggagg ggacccagaa attgtaacgc acagttttaa     6900

ttgtggaggg gaatttttct actgtaattc aacacaactg tttaatagta cttggtttaa     6960

tagtacttgg agtactgaag ggtcaaataa cactgaagga agtgacacaa tcaccctccc     7020

atgcagaata aaacaaatta taaacatgtg gcagaaagta ggaaaagcaa tgtatgcccc     7080

tcccatcagt ggacaaatta gatgttcatc aaatattaca gggctgctat taacaagaga     7140

tggtggtaat agcaacaatg agtccgagat cttcagacct ggaggaggag atatgaggga     7200

caattggaga agtgaattat ataaatataa agtagtaaaa attgaaccat taggagtagc     7260

acccaccaag gcaaagagaa gagtggtgca gagagaaaaa agagcagtgg gaataggagc     7320

tttgttcctt gggttcttgg gagcagcagg aagcactatg ggcgcagcct caatgacgct     7380

gacggtacag gccagacaat tattgtctgg tatagtgcag cagcagaaca atttgctgag     7440

ggctattgag gcgcaacagc atctgttgca actcacagtc tggggcatca agcagctcca     7500

ggcaagaatc ctggctgtgg aaagatacct aaaggatcaa cagctcctgg ggatttgggg     7560

ttgctctgga aaactcattt gcaccactgc tgtgccttgg aatgctagtt ggagtaataa     7620

atctctggaa cagatttgga atcacacgac ctggatggag tgggacagag aaattaacaa     7680

ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga     7740

acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa     7800

ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat     7860

agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt     7920

tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg     7980

tggagagaga gacagagaca gatccattcg attagtgaac ggatccttgg cacttatctg     8040

ggacgatctg cggagcctgt gcctcttcag ctaccaccgc ttgagagact tactcttgat     8100

tgtaacgagg attgtggaac ttctgggacg cagggggtgg gaagccctca aatattggtg     8160

gaatctccta cagtattgga gtcaggaact aaagaatagt gctgttagct tgctcaatgc     8220

cacagccata gcagtagctg aggggacaga tagggttata gaagtagtac aaggagcttg     8280

tagagctatt cgccacatac ctagaagaat aagacagggc ttggaaagga ttttgctata     8340

agatgggtgg caagtggtca aaaagtagtg tgattggatg gcctactgta agggaaagaa     8400

tgagacgagc tgagccagca gcagataggg tgggagcagc atctcgagac ctggaaaaac     8460

atggagcaat cacaagtagc aatacagcag ctaccaatgc tgcttgtgcc tggctagaag     8520

cacaagagga ggaggaggtg ggttttccag tcacacctca ggtaccttta agaccaatga     8580

cttacaaggc agctgtagat cttagccact ttttaaaaga aaagggggga ctggaagggc     8640

taattcactc ccaaagaaga caagatatcc ttgatctgtg gatctaccac acacaaggct     8700

acttccctga ttagcagaac tacacaccag ggccaggggt cagatatcca ctgacctttg     8760

gatggtgcta caagctagta ccagttgagc cagataagat agaagaggcc aataaaggag     8820

agaacaccag cttgttacac cctgtgagcc tgcatgggat ggatgacccg gagagagaag     8880

tgttagagtg gaggtttgac agccgcctag catttcatca cgtggcccga gagctgcatc     8940

cggagtactt caagaactgc tgacatcgag cttgctacaa gggactttcc gctggggact     9000

ttccagggag gcgtggcctg ggcgggactg gggagtggcg agccctcaga tcctgcatat     9060

aagcagctgc tttttgcctg tactgggtct ctctggttag accagatctg agcctgggag     9120

ctctctggct aactagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt     9180

c                                                                     9181


<210> 12
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 12
tttttagatg ggatagataa ggctcaagaa gaacatgaaa gatatcacag caattggaga       60

acaatggcta gtgattttaa tttgccacct atagtagcaa aggaaatagt agccaactgt      120

gataaatgtc aactaaaagg ggaagctatg catggacaag tagactgtag tccagggata      180

tggcaattag attgcacaca tctagaagga aaagtcatcc tggtagcagt ccacgtggcc      240

agtggatata tagaagcaga agttatccca gcagaaacag gacaggagac agcatacttt      300

ctgctaaaat tagcaggaag atggccagta aaagtaatac acacagacaa cggtagcaat      360

ttcaccagcg ctgcagttaa agcagcctgt tggtgggcca atgtccgaca ggaatttggg      420

atcccctaca atccccaaag tcaaggagta gtagaatcta tgaataagga attaaagaaa      480

atcatagggc aggtaagaga gcaagctgaa caccttaaga cagcagtaca aatggcagta      540

ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tacaaaaatt      660

caaaattttc gggtttatta cagggacagc agagacccaa tttggaaagg accagcaaaa      720

ctactctgga aaggtgaagg ggcagtagta atacaagaca atagtgatat aaaagtagta      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattag                                          867


<210> 13
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 13
tttttagatg gcatagataa agcccaagaa gagcatgaaa gatatcacag caattggaga       60

gcaatggcta gtgattttaa tctgccacct atagtagcaa aagaaatagt ggccagctgt      120

gataaatgtc agctaaaagg ggaagccatg catggacaag tagactgtag tccaggaata      180

tggcaattag attgtacaca tttagaagga aaaattatcc tggtagcagt ccatgtagcc      240

agtggctata tagaagcaga agttatccca gcagaaacag gacaggagac agcatacttt      300

atattaaaat tagcaggaag atggccagtg aaagtaatac acacagacaa tggcagcaat      360

ttcaccagtg ctgcagtaaa ggcagcatgt tggtgggcaa atgtcacaca agaatttgga      420

attccctaca atccccaaag ccaaggagta gtggaatcta tgaataaaga attaaagaaa      480

attatagggc aggtcaggga tcaagctgaa caccttaaga cagcagtaca gatggcagta      540

ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcatcaga tatacaaact aaagaactac aaaaacaaat tacaaaaatt      660

caaaattttc gggtttatta cagggacagc agagacccca tttggaaagg accagcaaaa      720

ctactctgga aaggtgaagg ggcagtagta atacaggaca atagtgatat aaaggtagta      780

ccaagaagaa aagcaaaaat cattaaggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattag                                          867


<210> 14
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 14
tttttagatg ggatagataa agctcaagaa gaacatgaaa gatatcacag caattggaga       60

gcaatggcta gtgattttaa tctgccacct atagtagcaa aggaaatagt agccagctgt      120

gataaatgtc agctaaaagg ggaagccatg catggacaag tagactgcag tccagggata      180

tggcaattag attgcacaca tctagaagga aaagtaattc tggtagcagt ccatgtagcc      240

agtggctata tagaagcaga agttatccca gcagaaacag gacaggagac agcatacttt      300

ctactaaaat tagcaggaag atggccagta aaagtagtac acacagacaa tggcagcaat      360

ttcaccagcg ctgcatttaa agcagcctgt tggtgggcaa atatccaaca ggaatttggg      420

attccctaca atccccaaag tcaaggagta gtggaatcta tgaataagga attaaagaaa      480

atcatagggc aggtaagaga gcaagctgaa caccttaaaa cagcagtaca aatggcagta      540

ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tacaaaaatt      660

caaaattttc gggtttatta cagggacagc agagatccaa tttggaaagg accagcaaaa      720

ctactctgga aaggtgaagg ggcagtagta atacaggaca atagtgatat aaaggtagta      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattag                                          867


<210> 15
<211> 867
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (51)..(51)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (267)..(267)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (276)..(276)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (310)..(310)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (411)..(411)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (546)..(546)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (726)..(726)
<223> a, c, t, g, unknown or other

<400> 15
tttttagatg ggatagataa ggctcaagaa gaacatgaaa gatatcacag naattggaga       60

gcaatggctc atgactttaa tctgccacct atagtagcaa aagaaatagt agctagctgt      120

gataaatgtc agctaaaagg ggaagccatg catggacaag tagactgtag tccaggaata      180

tggcaactag attgcacaca tctagaagga aaagttatcc tggtagcagt ccatgtagcc      240

agtggctata tagaagcaga agtcatncca gcaganacag gacaggaaac agcatacttt      300

atattaaaan tagcaggaag atggccagta aaagtaatac atacagacaa tgggcccaat      360

ttcaccagtg caacagttaa ggcagcctgt tggtgggcag gtgtccaaca ngaatttggg      420

attccctaca atccccaaag tcaaggagta gtggaatcta tgaataaaga attaaagaaa      480

atcatagggc aggtaagaga tcaagctgaa caccttaaga cagcagtaca aatggcagta      540

ttcatncaca attttaaaag aaaagggggg attgggggat acagtgcagg ggaaagaata      600

atagacataa tagcaacaga tatacaaact aaagaattac aaaaacaaat tataaaaatt      660

caaaattttc gggtttatta cagggacagc agagatccaa tttggaaagg accagcaaaa      720

ctcctntgga aaggtgaagg ggcagtagta atacaagaca atagtgatat aaaggtagta      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattag                                          867


<210> 16
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 16
tttttagatg gaatagataa ggcccaagaa gaacatgaga aatatcacag taattggaga       60

gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaaatagt agccagctgt      120

gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata      180

tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt tcatgtagcc      240

agtggatata tagaagcaga agttattcca gcagagacag ggcaggaaac agcatacttt      300

ctcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat      360

ttcaccagta ctacggttaa ggccgcctgt tggtgggcgg ggatcaagca ggaatttggc      420

attccctaca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa      480

attataggac aggtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta      540

ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

gtagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tacaaaaatt      660

caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag      720

cttctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaagta gacaggatga ggattag                                          867


<210> 17
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 17
tttctagatg gaatagataa ggctcaagaa gagcatgaaa agtatcacag caattggaga       60

gcaatggcta gtgagtttaa tctgccaccc atagtagcaa aagaaatagt agctagctgt      120

gataaatgtc agctaaaagg ggaagccata catggacaag tagactgtag tccagggata      180

tggcaattag attgtacaca tttagaagga aaaatcatcc tggtagcagt ccatgtagcc      240

agtggctaca tagaagcaga ggttatccca gcagaaacag gacaagaaac agcatactat      300

atactaaaat tagcaggaag atggccagtc aaagtaatac atacagacaa tggcagtaat      360

ttcaccagtg ctgcagttaa ggcagcctgt tggtgggcag gtatccaaca ggaatttgga      420

attccctaca atccccaaag tcagggagta gtagaatcca tgaataaaga attaaagaaa      480

atcatagggc aggtaagaga tcaagctgag caccttaaga cagcagtaca aatggcagta      540

ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tataaaaatt      660

caaaattttc gggtttatta cagagacagc agagacccta tttggaaagg accagccaaa      720

ctactctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaggtagta      780

ccaaggagga aagcaaaaat cattaaggac tatggaaaac agatggcagg tgctgattgt      840

gtggcaggta gacaggatga agattag                                          867


<210> 18
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 18
ttcttggatg gaatagataa ggctcaagaa gaacatgaga aataccacaa caattggaga       60

gcaatggcta gtgattttaa cctgccacct gtggtagcaa aagaaatagt agctagctgt      120

gataaatgtc agctaaaagg agaagccttg catggacaag tagactgtag tccaggaata      180

tggcaattag attgtacaca tttagaagga aaagttatcc tggtagcagt ccatgtagcc      240

agtggctata tagaagcaga agttattcca gcagaaacag ggcaggaaac agcctacttt      300

ctcttaaaat tagcaggaag atggccagta aaagtagtac atacagacaa tggcagcaat      360

ttcaccagcg ctgcagttaa ggccgcctgt tggtgggcag gcatcaagca ggaatttgga      420

attccctaca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa      480

attataggac aggtaagaga tcaagctgaa catcttaaga cagcagtaca aatggcagta      540

ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat cataaaaatt      660

caaaattttc gggtttatta cagggacagc agagatccaa tttggaaagg accagcaaag      720

cttctctgga aaggtgaagg ggcagtagta atacaagaca atagtgaaat aaaggtagta      780

ccaagaagaa aagtaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaagta gacaggatga ggattag                                          867


<210> 19
<211> 867
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (165)..(165)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (214)..(214)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (250)..(250)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (285)..(285)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (335)..(335)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (356)..(356)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (579)..(579)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (632)..(632)
<223> a, c, t, g, unknown or other

<400> 19
tttttagatg ggatagataa ggcacaagag gaacatgaaa aatatcacaa caattggaga       60

gcaatggcta gtgattttaa tctgccacct gtagtagcaa aagaaatagt agctagctgt      120

gataagtgtc agctaaaagg ggaagccatg catggacaag tagantgtag tccagggata      180

tggcaattag attgtacaca tttagaagga aaanttatcc tggtagcagt ccatgtagct      240

agtgggtacn tagaagcaga agttatccca gcagaaacag gacangaaac agcctacttc      300

atactaaagt tagcaggaag atggccagta aaaanaatac atacagacaa tggcancaat      360

ttcaccagtg ccgcggttaa ggcagcctgt tggtgggcag gtatccagca ggaatttgga      420

attccctaca acccccaaag tcaaggagta gtagaatcta tgaataaaga gctaaagaag      480

atcataggac aggtaagaga tcaagctgaa catcttaaga cagcagtaca aatggcagta      540

ttcatccaca attttaaaag aaaagggggg attgggggnt acagtgcagg ggaaagaata      600

atagacataa tatcaacaga catacaaact anagaattac aaaaacaaat tataaaaatt      660

caaaatttcc gggtttatta cagggacagc agagacccag tttggaaagg accagcaaag      720

ctactctgga aaggtgaagg ggcagtagtc atacaagaca atagtgaaat aaaggtagta      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattaa                                          867


<210> 20
<211> 867
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (50)..(50)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (267)..(267)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (279)..(279)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (483)..(483)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (492)..(492)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (652)..(652)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (700)..(700)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (798)..(798)
<223> a, c, t, g, unknown or other

<400> 20
tttttggatg ggatagataa ggctcaagaa gaacatgaaa aatatcacan caattggaga       60

gcaatggcta gtgattttaa tctgccacct gtagtagcaa aagaaatagt agccagctgt      120

gataaatgtc agctaaaagg ggaagccatg catggacaag tagactgcag tccagggata      180

tggcaattag attgtacaca tttagaagga aaaattatcc tggtagcagt ccatgtagct      240

agtggctata tagaagcaga agttatncca gcagaaacng gacaggaaac agcctacttc      300

atactaaagt tagcaggaag atggccagta aaaataatac atacagacaa tggcagcaat      360

ttcaccagta ctgtggttaa ggcagcctgt tggtgggcag gtatccagca ggaatttgga      420

attccctaca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa      480

atnataggac angtaagaga tcaagctgaa catcttaaga cagcagtgca aatggcagta      540

ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tncaaaaatt      660

caaaattttc gggtttattt cagggacagc agagacccan tttggaaagg accagcaaag      720

ctactctgga aaggtgaagg ggcagtagtc atacaagaca ataatgaaat aaaagtagta      780

ccaagaagaa aagcaaanat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattag                                          867


<210> 21
<211> 867
<212> DNA
<213> Human immunodeficiency virus


<220>
<221> modified_base
<222> (231)..(231)
<223> a, c, t, g, unknown or other

<400> 21
tttttagatg gcatagataa agcccaagaa gaccatgaaa gatatcacag caattggaga       60

gcaatggcta gtgattttaa tctgccacct atagtagcaa aagaaatagt ggccagctgt      120

gataaatgtc agctaaaagg ggaagccatg catggacaag tagactgtag tccaggaata      180

tggcaattag attgtacaca tttagaagga aaaattatcc tggtagcagt ncatgtagcc      240

agtggctata tagaagcaga agttatccca gcagaaacag gacaggaaac agcatacttt      300

atattaaaat tagcaggaag gtggccagta aaagtaatac atacagacaa tggcagcaat      360

ttcaccagtg ctgcagtaaa ggcagcatgt tggtgggcaa atatcacaca ggaatttgga      420

attccctaca atccccaaag ccaaggagta gtggaatcta tgaataagga attaaagaaa      480

atcatcgggc aggtcaggga tcaagctgaa catcttaaga cagcagtaca gatggcagta      540

ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

atagacataa tagcatcaga tatacaaact aaagaactac aaaaacaaat tacaaaaatt      660

caaaattttc gggtttatta cagggacagc agagacccaa tttggaaagg accagcaaag      720

ctactctgga aaggtgaagg ggcagtagta atacaagaca ataacgaaat aaaggtagta      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaggta gacaggatga ggattag                                          867


<210> 22
<211> 867
<212> DNA
<213> Human immunodeficiency virus

<400> 22
tttttagatg gaatagataa ggcccaagat gaacatgaga aatatcacag taattggaga       60

gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaaatagt agccagctgt      120

gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata      180

tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt tcatgtagcc      240

agtggatata tagaagcaga agttattcca gcagaaacag ggcaggaaac agcatatttt      300

cttttaaaat tagcaggaag atggccagta aaaacaatac atactgacaa tggcagcaat      360

ttcaccggtg ctacggttag ggccgcctgt tggtgggcgg gaatcaagca ggaatttgga      420

attccctaca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa      480

attataggac aggtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta      540

ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata      600

gtagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tacaaaaatt      660

caaaattttc gggtttatta cagggacagc agaaatccac tttggaaagg accagcaaag      720

ctcctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg      780

ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt      840

gtggcaagta gacaggatga ggattag                                          867


<210> 23
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 23
ttttcgggtt tattacagrg                                                   20


<210> 24
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 24
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 25
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 25
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 26
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 26
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 27
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 27
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 28
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 28
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 29
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 29
aaattcaaaa ttttcgggtt tattacagag acagcagaga                             40


<210> 30
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 30
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 31
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 31
aaattcaaaa tttccgggtt tattacaggg acagcagaga                             40


<210> 32
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 32
aaattcaaaa ttttcgggtt tatttcaggg acagcagaga                             40


<210> 33
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 33
aaattcaaaa ttttcgggtt tattacaggg acagcagaga                             40


<210> 34
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 34
aaattcaaaa ttttcgggtt tattacaggg acagcagaaa                             40


<210> 35
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 35
ttttcgggtt tattacagag ac                                                22


<210> 36
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 36
cgggtctatt acagggac                                                     18


<210> 37
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 37
ggtttattac agggacagc                                                    19


<210> 38
<211> 21
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 38
gggtttatta cagagacagc a                                                 21


<210> 39
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 39
cgggtttatt acagggaca                                                    19


<210> 40
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 40
tggaaaacar atggcagg                                                     18


<210> 41
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 41
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 42
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 42
attaaggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 43
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 43
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 44
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 44
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 45
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 45
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 46
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 46
attaaggact atggaaaaca gatggcaggt gctgattgtg                             40


<210> 47
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 47
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 48
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 48
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 49
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 49
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 50
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 50
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 51
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 51
attagggatt atggaaaaca gatggcaggt gatgattgtg                             40


<210> 52
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 52
atggaaaaca aatggcagg                                                    19


<210> 53
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 53
aaaacagatg gcaggtga                                                     18


<210> 54
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 54
tggaaaacag atggcagg                                                     18


<210> 55
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 55
caaacagatg gcaggtga                                                     18


<210> 56
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 56
gtggaaaggt gaaggggcag tagt                                              24


<210> 57
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 57
aaactactct ggaaaggtga aggggcagta gtaatacaag                             40


<210> 58
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 58
aaactactct ggaaaggtga aggggcagta gtaatacagg                             40


<210> 59
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 59
aaactactct ggaaaggtga aggggcagta gtaatacagg                             40


<210> 60
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<221> modified_base
<222> (9)..(9)
<223> a, c, t, g, unknown or other

<400> 60
aaactcctnt ggaaaggtga aggggcagta gtaatacaag                             40


<210> 61
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 61
aagcttctct ggaaaggtga aggggcagta gtaatacaag                             40


<210> 62
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 62
aaactactct ggaaaggtga aggggcagta gtaatacaag                             40


<210> 63
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 63
aagcttctct ggaaaggtga aggggcagta gtaatacaag                             40


<210> 64
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 64
aagctactct ggaaaggtga aggggcagta gtcatacaag                             40


<210> 65
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 65
aagctactct ggaaaggtga aggggcagta gtcatacaag                             40


<210> 66
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 66
aagctactct ggaaaggtga aggggcagta gtaatacaag                             40


<210> 67
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 67
aagctcctct ggaaaggtga aggggcagta gtaatacaag                             40


<210> 68
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 68
tctctggaaa ggtgaagggg cagt                                              24


<210> 69
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 69
gcaaaactac tctggaaagg tgaaggggca gtagtaatac                             40


<210> 70
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 70
gcaaaactac tctggaaagg tgaaggggca gtagtaatac                             40


<210> 71
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 71
gcaaaactac tctggaaagg tgaaggggca gtagtaatac                             40


<210> 72
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<221> modified_base
<222> (12)..(12)
<223> a, c, t, g, unknown or other

<400> 72
gcaaaactcc tntggaaagg tgaaggggca gtagtaatac                             40


<210> 73
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 73
gcaaagcttc tctggaaagg tgaaggggca gtagtaatac                             40


<210> 74
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 74
gccaaactac tctggaaagg tgaaggggca gtagtaatac                             40


<210> 75
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 75
gcaaagcttc tctggaaagg tgaaggggca gtagtaatac                             40


<210> 76
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 76
gcaaagctac tctggaaagg tgaaggggca gtagtcatac                             40


<210> 77
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 77
gcaaagctac tctggaaagg tgaaggggca gtagtcatac                             40


<210> 78
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 78
gcaaagctac tctggaaagg tgaaggggca gtagtaatac                             40


<210> 79
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 79
gcaaagctcc tctggaaagg tgaaggggca gtagtaatac                             40


<210> 80
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 80
ctctggaaag gtgaaggggc agtg                                              24


<210> 81
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 81
ttggaaaggt gaaggggcag tagt                                              24


<210> 82
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 82
tactttggaa aggtgaaggg gcagt                                             25


<210> 83
<211> 25
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 83
ctggaaaggt gaaggggcag ttgta                                             25


<210> 84
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 84
ctggaaaggt gaaggggcag tagt                                              24


<210> 85
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 85
ttttcgggtt tattacaggg                                                   20


<210> 86
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 86
ttttcgggtt tattacaggg                                                   20


<210> 87
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 87
ttttcgggtt tattacaggg                                                   20


<210> 88
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 88
ttttcgggtt tattacaggg                                                   20


<210> 89
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 89
ttttcgggtt tattacaggg                                                   20


<210> 90
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 90
ttttcgggtt tattacagag                                                   20


<210> 91
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 91
ttttcgggtt tattacaggg                                                   20


<210> 92
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 92
tttccgggtt tattacaggg                                                   20


<210> 93
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 93
ttttcgggtt tatttcaggg                                                   20


<210> 94
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 94
ttttcgggtt tattacaggg                                                   20


<210> 95
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 95
ttttcgggtt tattacaggg                                                   20


<210> 96
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 96
tggaaaacag atggcagg                                                     18


<210> 97
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 97
tggaaaacag atggcagg                                                     18


<210> 98
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 98
tggaaaacag atggcagg                                                     18


<210> 99
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 99
tggaaaacag atggcagg                                                     18


<210> 100
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 100
tggaaaacag atggcagg                                                     18


<210> 101
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 101
tggaaaacag atggcagg                                                     18


<210> 102
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 102
tggaaaacag atggcagg                                                     18


<210> 103
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 103
tggaaaacag atggcagg                                                     18


<210> 104
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 104
tggaaaacag atggcagg                                                     18


<210> 105
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 105
tggaaaacag atggcagg                                                     18


<210> 106
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 106
tggaaaacag atggcagg                                                     18


<210> 107
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 107
ctggaaaggt gaaggggcag tagt                                              24


<210> 108
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 108
ctggaaaggt gaaggggcag tagt                                              24


<210> 109
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 109
ctggaaaggt gaaggggcag tagt                                              24


<210> 110
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<221> modified_base
<222> (1)..(1)
<223> a, c, t, g, unknown or other

<400> 110
ntggaaaggt gaaggggcag tagt                                              24


<210> 111
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 111
ctggaaaggt gaaggggcag tagt                                              24


<210> 112
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 112
ctggaaaggt gaaggggcag tagt                                              24


<210> 113
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 113
ctggaaaggt gaaggggcag tagt                                              24


<210> 114
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 114
ctggaaaggt gaaggggcag tagt                                              24


<210> 115
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 115
ctggaaaggt gaaggggcag tagt                                              24


<210> 116
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 116
ctggaaaggt gaaggggcag tagt                                              24


<210> 117
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 117
ctggaaaggt gaaggggcag tagt                                              24


<210> 118
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 118
actctggaaa ggtgaagggg cagt                                              24


<210> 119
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 119
actctggaaa ggtgaagggg cagt                                              24


<210> 120
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 120
actctggaaa ggtgaagggg cagt                                              24


<210> 121
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe


<220>
<221> modified_base
<222> (4)..(4)
<223> a, c, t, g, unknown or other

<400> 121
cctntggaaa ggtgaagggg cagt                                              24


<210> 122
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 122
tctctggaaa ggtgaagggg cagt                                              24


<210> 123
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 123
actctggaaa ggtgaagggg cagt                                              24


<210> 124
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 124
tctctggaaa ggtgaagggg cagt                                              24


<210> 125
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 125
actctggaaa ggtgaagggg cagt                                              24


<210> 126
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 126
actctggaaa ggtgaagggg cagt                                              24


<210> 127
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 127
actctggaaa ggtgaagggg cagt                                              24


<210> 128
<211> 24
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 128
cctctggaaa ggtgaagggg cagt                                              24


<210> 129
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 129
cctgccatyt gttttcca                                                     18


<210> 130
<211> 288
<212> PRT
<213> Human immunodeficiency virus

<400> 130
Phe Leu Asp Gly Ile Asp Lys Ala Gln Glu Glu His Glu Lys Tyr His 
1               5                   10                  15      


Ser Asn Trp Arg Ala Met Ala Ser Asp Phe Asn Leu Pro Pro Val Val 
            20                  25                  30          


Ala Lys Glu Ile Val Ala Ser Cys Asp Lys Cys Gln Leu Lys Gly Glu 
        35                  40                  45              


Ala Met His Gly Gln Val Asp Cys Ser Pro Gly Ile Trp Gln Leu Asp 
    50                  55                  60                  


Cys Thr His Leu Glu Gly Lys Ile Ile Leu Val Ala Val His Val Ala 
65                  70                  75                  80  


Ser Gly Tyr Ile Glu Ala Glu Val Ile Pro Ala Glu Thr Gly Gln Glu 
                85                  90                  95      


Thr Ala Tyr Phe Leu Leu Lys Leu Ala Gly Arg Trp Pro Val Lys Thr 
            100                 105                 110         


Ile His Thr Asp Asn Gly Ser Asn Phe Thr Ser Thr Thr Val Lys Ala 
        115                 120                 125             


Ala Cys Trp Trp Ala Gly Ile Lys Gln Glu Phe Gly Ile Pro Tyr Asn 
    130                 135                 140                 


Pro Gln Ser Gln Gly Val Val Glu Ser Met Asn Lys Glu Leu Lys Lys 
145                 150                 155                 160 


Ile Ile Gly Gln Val Arg Asp Gln Ala Glu His Leu Lys Thr Ala Val 
                165                 170                 175     


Gln Met Ala Val Phe Ile His Asn Phe Lys Arg Lys Gly Gly Ile Gly 
            180                 185                 190         


Gly Tyr Ser Ala Gly Glu Arg Ile Val Asp Ile Ile Ala Thr Asp Ile 
        195                 200                 205             


Gln Thr Lys Glu Leu Gln Lys Gln Ile Thr Lys Ile Gln Asn Phe Arg 
    210                 215                 220                 


Val Tyr Tyr Arg Asp Ser Arg Asp Pro Leu Trp Lys Gly Pro Ala Lys 
225                 230                 235                 240 


Leu Leu Trp Lys Gly Glu Gly Ala Val Val Ile Gln Asp Asn Ser Asp 
                245                 250                 255     


Ile Lys Val Val Pro Arg Arg Lys Ala Lys Ile Ile Arg Asp Tyr Gly 
            260                 265                 270         


Lys Gln Met Ala Gly Asp Asp Cys Val Ala Ser Arg Gln Asp Glu Asp 
        275                 280                 285             


<210> 131
<211> 1003
<212> PRT
<213> Human immunodeficiency virus

<400> 131
Phe Phe Arg Glu Asp Leu Ala Phe Pro Gln Gly Lys Ala Arg Glu Phe 
1               5                   10                  15      


Ser Ser Glu Gln Thr Arg Ala Asn Ser Pro Thr Arg Arg Glu Leu Gln 
            20                  25                  30          


Val Trp Gly Arg Asp Asn Asn Ser Leu Ser Glu Ala Gly Ala Asp Arg 
        35                  40                  45              


Gln Gly Thr Val Ser Phe Ser Phe Pro Gln Ile Thr Leu Trp Gln Arg 
    50                  55                  60                  


Pro Leu Val Thr Ile Lys Ile Gly Gly Gln Leu Lys Glu Ala Leu Leu 
65                  70                  75                  80  


Asp Thr Gly Ala Asp Asp Thr Val Leu Glu Glu Met Asn Leu Pro Gly 
                85                  90                  95      


Arg Trp Lys Pro Lys Met Ile Gly Gly Ile Gly Gly Phe Ile Lys Val 
            100                 105                 110         


Arg Gln Tyr Asp Gln Ile Leu Ile Glu Ile Cys Gly His Lys Ala Ile 
        115                 120                 125             


Gly Thr Val Leu Val Gly Pro Thr Pro Val Asn Ile Ile Gly Arg Asn 
    130                 135                 140                 


Leu Leu Thr Gln Ile Gly Cys Thr Leu Asn Phe Pro Ile Ser Pro Ile 
145                 150                 155                 160 


Glu Thr Val Pro Val Lys Leu Lys Pro Gly Met Asp Gly Pro Lys Val 
                165                 170                 175     


Lys Gln Trp Pro Leu Thr Glu Glu Lys Ile Lys Ala Leu Val Glu Ile 
            180                 185                 190         


Cys Thr Glu Met Glu Lys Glu Gly Lys Ile Ser Lys Ile Gly Pro Glu 
        195                 200                 205             


Asn Pro Tyr Asn Thr Pro Val Phe Ala Ile Lys Lys Lys Asp Ser Thr 
    210                 215                 220                 


Lys Trp Arg Lys Leu Val Asp Phe Arg Glu Leu Asn Lys Arg Thr Gln 
225                 230                 235                 240 


Asp Phe Trp Glu Val Gln Leu Gly Ile Pro His Pro Ala Gly Leu Lys 
                245                 250                 255     


Lys Lys Lys Ser Val Thr Val Leu Asp Val Gly Asp Ala Tyr Phe Ser 
            260                 265                 270         


Val Pro Leu Asp Lys Asp Phe Arg Lys Tyr Thr Ala Phe Thr Ile Pro 
        275                 280                 285             


Ser Ile Asn Asn Glu Thr Pro Gly Ile Arg Tyr Gln Tyr Asn Val Leu 
    290                 295                 300                 


Pro Gln Gly Trp Lys Gly Ser Pro Ala Ile Phe Gln Ser Ser Met Thr 
305                 310                 315                 320 


Lys Ile Leu Glu Pro Phe Arg Lys Gln Asn Pro Asp Ile Val Ile Tyr 
                325                 330                 335     


Gln Tyr Met Asp Asp Leu Tyr Val Gly Ser Asp Leu Glu Ile Gly Gln 
            340                 345                 350         


His Arg Thr Lys Ile Glu Glu Leu Arg Gln His Leu Leu Arg Trp Gly 
        355                 360                 365             


Phe Thr Thr Pro Asp Lys Lys His Gln Lys Glu Pro Pro Phe Leu Trp 
    370                 375                 380                 


Met Gly Tyr Glu Leu His Pro Asp Lys Trp Thr Val Gln Pro Ile Val 
385                 390                 395                 400 


Leu Pro Glu Lys Asp Ser Trp Thr Val Asn Asp Ile Gln Lys Leu Val 
                405                 410                 415     


Gly Lys Leu Asn Trp Ala Ser Gln Ile Tyr Ala Gly Ile Lys Val Lys 
            420                 425                 430         


Gln Leu Cys Lys Leu Leu Arg Gly Thr Lys Ala Leu Thr Glu Val Ile 
        435                 440                 445             


Pro Leu Thr Glu Glu Ala Glu Leu Glu Leu Ala Glu Asn Arg Glu Ile 
    450                 455                 460                 


Leu Lys Glu Pro Val His Gly Val Tyr Tyr Asp Pro Ser Lys Asp Leu 
465                 470                 475                 480 


Ile Ala Glu Ile Gln Lys Gln Gly Gln Gly Gln Trp Thr Tyr Gln Ile 
                485                 490                 495     


Tyr Gln Glu Pro Phe Lys Asn Leu Lys Thr Gly Lys Tyr Ala Arg Met 
            500                 505                 510         


Arg Gly Ala His Thr Asn Asp Val Lys Gln Leu Thr Glu Ala Val Gln 
        515                 520                 525             


Lys Ile Ala Thr Glu Ser Ile Val Ile Trp Gly Lys Thr Pro Lys Phe 
    530                 535                 540                 


Lys Leu Pro Ile Gln Lys Glu Thr Trp Glu Ala Trp Trp Thr Glu Tyr 
545                 550                 555                 560 


Trp Gln Ala Thr Trp Ile Pro Glu Trp Glu Phe Val Asn Thr Pro Pro 
                565                 570                 575     


Leu Val Lys Leu Trp Tyr Gln Leu Glu Lys Glu Pro Ile Val Gly Ala 
            580                 585                 590         


Glu Thr Phe Tyr Val Asp Gly Ala Ala Asn Arg Glu Thr Lys Leu Gly 
        595                 600                 605             


Lys Ala Gly Tyr Val Thr Asp Arg Gly Arg Gln Lys Val Val Ser Leu 
    610                 615                 620                 


Thr Asp Thr Thr Asn Gln Lys Thr Glu Leu Gln Ala Ile His Leu Ala 
625                 630                 635                 640 


Leu Gln Asp Ser Gly Leu Glu Val Asn Ile Val Thr Asp Ser Gln Tyr 
                645                 650                 655     


Ala Leu Gly Ile Ile Gln Ala Gln Pro Asp Lys Ser Glu Ser Glu Leu 
            660                 665                 670         


Val Ser Gln Ile Ile Glu Gln Leu Ile Lys Lys Glu Lys Val Tyr Leu 
        675                 680                 685             


Ala Trp Val Pro Ala His Lys Gly Ile Gly Gly Asn Glu Gln Val Asp 
    690                 695                 700                 


Lys Leu Val Ser Ala Gly Ile Arg Lys Val Leu Phe Leu Asp Gly Ile 
705                 710                 715                 720 


Asp Lys Ala Gln Glu Glu His Glu Lys Tyr His Ser Asn Trp Arg Ala 
                725                 730                 735     


Met Ala Ser Asp Phe Asn Leu Pro Pro Val Val Ala Lys Glu Ile Val 
            740                 745                 750         


Ala Ser Cys Asp Lys Cys Gln Leu Lys Gly Glu Ala Met His Gly Gln 
        755                 760                 765             


Val Asp Cys Ser Pro Gly Ile Trp Gln Leu Asp Cys Thr His Leu Glu 
    770                 775                 780                 


Gly Lys Ile Ile Leu Val Ala Val His Val Ala Ser Gly Tyr Ile Glu 
785                 790                 795                 800 


Ala Glu Val Ile Pro Ala Glu Thr Gly Gln Glu Thr Ala Tyr Phe Leu 
                805                 810                 815     


Leu Lys Leu Ala Gly Arg Trp Pro Val Lys Thr Ile His Thr Asp Asn 
            820                 825                 830         


Gly Ser Asn Phe Thr Ser Thr Thr Val Lys Ala Ala Cys Trp Trp Ala 
        835                 840                 845             


Gly Ile Lys Gln Glu Phe Gly Ile Pro Tyr Asn Pro Gln Ser Gln Gly 
    850                 855                 860                 


Val Val Glu Ser Met Asn Lys Glu Leu Lys Lys Ile Ile Gly Gln Val 
865                 870                 875                 880 


Arg Asp Gln Ala Glu His Leu Lys Thr Ala Val Gln Met Ala Val Phe 
                885                 890                 895     


Ile His Asn Phe Lys Arg Lys Gly Gly Ile Gly Gly Tyr Ser Ala Gly 
            900                 905                 910         


Glu Arg Ile Val Asp Ile Ile Ala Thr Asp Ile Gln Thr Lys Glu Leu 
        915                 920                 925             


Gln Lys Gln Ile Thr Lys Ile Gln Asn Phe Arg Val Tyr Tyr Arg Asp 
    930                 935                 940                 


Ser Arg Asp Pro Leu Trp Lys Gly Pro Ala Lys Leu Leu Trp Lys Gly 
945                 950                 955                 960 


Glu Gly Ala Val Val Ile Gln Asp Asn Ser Asp Ile Lys Val Val Pro 
                965                 970                 975     


Arg Arg Lys Ala Lys Ile Ile Arg Asp Tyr Gly Lys Gln Met Ala Gly 
            980                 985                 990         


Asp Asp Cys Val Ala Ser Arg Gln  Asp Glu Asp 
        995                 1000             


<210> 132
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 132
cctgccattt gttttccat                                                    19


<210> 133
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 133
tcacctgcca tctgtttt                                                     18


<210> 134
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 134
cctgccatct gttttcca                                                     18


<210> 135
<211> 18
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 135
tcacctgcca tctgtttg                                                     18


<210> 136
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 136
attccctaca atccccaaag                                                   20


<210> 137
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 137
tacaatcccc aaagtcaagg agtagt                                            26


<210> 138
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 138
tacaatcccc aaagccaagg agtagt                                            26


<210> 139
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 139
tacaatcccc aaagtcaggg agtagt                                            26


<210> 140
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 140
acagcagtac aaatggcagt attcat                                            26


<210> 141
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 141
acagcagtac agatggcagt atacat                                            26


<210> 142
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 142
acagcagtac agatggcagt gttcat                                            26


<210> 143
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 143
attccctaca atccccaaag                                                   20


<210> 144
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 144
attccctrca atcctcaaag                                                   20


<210> 145
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 145
attccctaca atcctcaaag                                                   20


<210> 146
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 146
tacaatcccc aaagtcaagg agtagt                                            26


<210> 147
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 147
trcaatcctc aaagtcaagg agtagt                                            26


<210> 148
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 148
tacaatcccc aaagtcragg ggtagt                                            26


<210> 149
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 149
tacaatcctc aaagtcatgg agtagt                                            26


<210> 150
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 150
cacaatttta aaagaaaagg gg                                                22


<210> 151
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 151
casaattwta aaagaaaagg gg                                                22


<210> 152
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      probe

<400> 152
acagmagtay aaatsrcagt aytyat                                            26


