                         SEQUENCE LISTING

<110>  VIB VZW
       UNIVERSITEIT GENT
 
<120>  Universal MRM tags for protein quantification

<130>  SELM/MRM/546

<150>  GB 1605140.1
<151>  2016-03-25

<160>  65    

<170>  PatentIn version 3.5

<210>  1
<211>  11
<212>  PRT
<213>  Pyrococcus furiosus

<400>  1

Glu Ala Val Ser Glu Ile Leu Glu Thr Ser Arg 
1               5                   10      


<210>  2
<211>  10
<212>  PRT
<213>  Pyrococcus furiosus

<400>  2

Thr Ile Val Val Gly Ser Pro Asn Glu Lys 
1               5                   10  


<210>  3
<211>  12
<212>  PRT
<213>  Pyrococcus furiosus

<400>  3

Gly Leu Gly Ala Ser Pro Gly Ile Gly Ala Gly Arg 
1               5                   10          


<210>  4
<211>  12
<212>  PRT
<213>  Pyrococcus furiosus

<400>  4

Asn Thr Ile Glu Gly Ala Glu Ile Thr Pro Gln Lys 
1               5                   10          


<210>  5
<211>  11
<212>  PRT
<213>  Pyrococcus furiosus

<400>  5

Val Leu Gly Thr Pro Ile Glu Gly Ile Glu Arg 
1               5                   10      


<210>  6
<211>  10
<212>  PRT
<213>  Pyrococcus furiosus

<400>  6

Ala Leu Glu Leu Glu Asn Val Leu Asp Arg 
1               5                   10  


<210>  7
<211>  10
<212>  PRT
<213>  Pyrococcus furiosus

<400>  7

Ala Ile Glu Thr Val Asp Ser Ala Val Arg 
1               5                   10  


<210>  8
<211>  9
<212>  PRT
<213>  Pyrococcus furiosus

<400>  8

Ile Glu Ser Ile Glu Glu Ala Ile Lys 
1               5                   


<210>  9
<211>  13
<212>  PRT
<213>  Pyrococcus furiosus

<400>  9

Gly Glu Ile Gly Glu Ile Pro Val Val Val Glu Asp Arg 
1               5                   10              


<210>  10
<211>  17
<212>  PRT
<213>  Pyrococcus furiosus

<400>  10

Gly Gly Gly Pro Ala Leu Ile Gly Ile Gly Glu Ser Asp Ser Asn Asn 
1               5                   10                  15      


Arg 
    


<210>  11
<211>  11
<212>  PRT
<213>  Pyrococcus furiosus

<400>  11

Ala Ala Ala Ile Val Thr Asp Glu Gly Gly Arg 
1               5                   10      


<210>  12
<211>  11
<212>  PRT
<213>  Pyrococcus furiosus

<400>  12

Val Gly Asn Pro Ala Glu Thr Leu Val Ser Lys 
1               5                   10      


<210>  13
<211>  14
<212>  PRT
<213>  Pyrococcus furiosus

<400>  13

Asp Leu Thr Ser Ser Ile Ile Gln Asn Glu Asn Gln His Lys 
1               5                   10                  


<210>  14
<211>  11
<212>  PRT
<213>  Pyrococcus furiosus

<400>  14

Glu Ile Ala Thr Ala Gly Thr Leu Glu Gly Arg 
1               5                   10      


<210>  15
<211>  10
<212>  PRT
<213>  Pyrococcus furiosus

<400>  15

Gly Gln Asp Ile Ala Glu Leu Glu Val Arg 
1               5                   10  


<210>  16
<211>  6
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Optimal tryptic context for PQS1

<400>  16

Leu Thr Leu Ile Phe Arg 
1               5       


<210>  17
<211>  6
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Optimal tryptic context for PQS1

<400>  17

Phe Ala Tyr Leu Tyr Asp 
1               5       


<210>  18
<211>  6
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Optimal tryptic context for PQS2

<400>  18

Val Ala Glu Ala Tyr Arg 
1               5       


<210>  19
<211>  6
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Optimal tryptic context for PQS2

<400>  19

Phe Leu Glu Thr Glu Asn 
1               5       


<210>  20
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  20
gcggccgcaa acgcgtgttc cgagagctga atgagg                                 36


<210>  21
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  21
cttttgaatt cgttgggccc gctgtctgag tcaggccctt c                           41


<210>  22
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  22
ctcgagttat cgattgacat tctccacttc ttgttc                                 36


<210>  23
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  23
gcttttgcta gcttggtacc aaatgcagat gtgcttgcag                             40


<210>  24
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  24
atcagccaag attgcaccat                                                   20


<210>  25
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  25
ggggaacttc ctgactaggg                                                   20


<210>  26
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  26
gggaggattg ggaagacaat                                                   20


<210>  27
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  27
ccagtctcca gcctttgttc                                                   20


<210>  28
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  28
acatatttgc atggggtgtg                                                   20


<210>  29
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  29
cctagaatgt ggctgattgt aaac                                              24


<210>  30
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  30
tccacaggaa gccgagctgt c                                                 21


<210>  31
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  31
ggggctcgac gctaggatct g                                                 21


<210>  32
<211>  37
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  32
taatcgataa ctcgagtagt tgacctgtct ataagag                                37


<210>  33
<211>  36
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  33
ggccgctttt gctagcgcac tctagcatgg gtgatg                                 36


<210>  34
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  34
ttgagccttt aagggagtgg                                                   20


<210>  35
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  35
ggggaacttc ctgactaggg                                                   20


<210>  36
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  36
gggaggattg ggaagacaat                                                   20


<210>  37
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  37
caaaaatctg aggccaggtg                                                   20


<210>  38
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  38
gccctgccca gtatgtagac                                                   20


<210>  39
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  39
ggagttggtg taaaggatga gc                                                22


<210>  40
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  40
gtgtagtggc gtgttctcca                                                   20


<210>  41
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  41
ggggaacttc ctgactaggg                                                   20


<210>  42
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  42
gggaggattg ggaagacaat                                                   20


<210>  43
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  43
aggctcagca gcatgatttc                                                   20


<210>  44
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  44
tgcctagcgt ggaacttttc                                                   20


<210>  45
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  45
gctgtgaggt gcttctttcc                                                   20


<210>  46
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  46
tgctcctgcc gagaaagtat                                                   20


<210>  47
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Primer

<400>  47
gcgatgcaat ttcctcattt                                                   20


<210>  48
<211>  844
<212>  DNA
<213>  Homo sapiens

<400>  48
cgcaaacgcg taaagggccc gtgtgtatgg ttaaaatacc taaaatctat tcttttagta       60

aatttccagt ataccaatat ataactaact atagtcctca tgctgtttac agtgactatt      120

ttatataaaa catgaaacac tgaatattga gccctatgat atactttacc ttagacatag      180

caaagttgct agcattcctg tgactgagca gttaaagggt tacagaaact gactgtgtgt      240

cttatttcat tgaaggacta ttggaaatgc acttcatgca atgaaatgaa tccccccctt      300

ccatcacatt gcaacagatg ttgggccctt cgtgagaatt ggcttcctga agataaaggg      360

aaagataaag gggaaatctc tgagaaagcc aaactggaaa actcaacaca agctgaagag      420

ggctttgatg ttcctgattg taaaaaaact atagtgaatg attccagaga gtcatgtgtt      480

gaggaaaatg atgataaaat tacacaagct tcacaatcac aagaaagtga agactattct      540

cagccatcaa cttctagtag cattatttat agcagccaag aagatgtgaa agagtttgaa      600

agggaagaaa cccaagacaa agaagagagt gtggaatcta gtttgcccct taatgccatt      660

gaaccttgtg tgatttgtca aggtcgacct aaaaatggtt gcattgtcca tggcaaaaca      720

ggacatctta tggcctgctt tacatgtgca aagaagctaa agaaaaggaa taagccctgc      780

ccagtatgta gacaaccaat tcaaatgatt gtgctaactt atttccccga attcgggaag      840

ttcc                                                                   844


<210>  49
<211>  959
<212>  DNA
<213>  Homo sapiens

<400>  49
cgcaaacgcg taaagggccc agaccactca gatttcttaa acttgttcag gacaatggtg       60

aaagtagcag gaaaagcggg agcattgcag tcagatctgg atttatcgcc tccatctctg      120

tcctgttgtg caagtcattt aacatctctg agtctcagta gctcatcttt aaagttagaa      180

taatcgcacc tcataaaaat ttttgtgagg actttaaaag atactatgta atgtgcttac      240

acaatgccaa gcacatggca gacacctaat aaaacatcaa gttctctctt ttccccttgc      300

cttcgggata gaaagtgttc tcatatggaa tagaaattaa gaatctatca gatagtatta      360

aggtgacatt actagcctta tctcatttcc ccgtgcttag tatatttcat cataggttta      420

aatgcttcac cttttccaga tttattaaaa ctagtgaccc ataacatgga tgaaatggga      480

aaatgtcatt gtgacttctg aaataaaaag cttagatgtg tgtggcaatt gaacatgttt      540

ctttttcttt ccatgtatga tgaattttga tatgaacaac atgacttcct aactccaaat      600

caaccagaag cctcccttgg ccaatgtgcc ctattgctcc agctctcagg ctggttgtgc      660

agtgggtagt tgcctagcgt ggaacttttc tttcgcccca gttcacatct ggcacacaag      720

gcaggcctca gtccatctgg atccctccct acattgtgtc ctttttcctt gttccacaga      780

cttgattaac tgtcaaaatg ttttgttttg ttttgttttg ttttgttaat aggacctgct      840

gcagctacag tatgaaggag ttgcagtcat gaaattattt gatagagcta aagtaaatgt      900

caacctcctg atcttccttc tcaacaaaaa gttctacggg aaggaattcg ggaagttcc       959


<210>  50
<211>  914
<212>  DNA
<213>  Homo sapiens

<400>  50
taatcgataa ctcgagtaat tgatcgtttg ctgccagccc agaaggatga aggaaagaag       60

cacctcacag ctcctttcta ggtccttctt tcctcattgg aagcaaagac ctagccaaca      120

acagcacctc aatctgatac actcccgatg ccacattttt aactcctctc gctctgatgg      180

gacatttgtt accctttttt catagtgaaa ttgtgtttca ggcttagtct gacctttctg      240

gtttcttcat tttcttccat tacttaggaa agagtggaaa ctccactaaa atttctctgt      300

gttgttacag tcttagaggt tgcagtacta tattgtaagc tttggtgttt gtttaattag      360

caatagggat ggtaggattc aaatgtgtgt catttagaag tggaagctat tagcaccaat      420

gacataaata catacaagac acacaactaa aatgtcatgt tattaacagt tattaggttg      480

tcatttaaaa ataaagttcc tttatatttc tgtcccatca ggaaaactga aggatatggg      540

gaatcattgg ttatcttcca ttgtgttttt ctttatggac aggagctaat ggaagtgaca      600

gtcatgttca aaggaagcat ttctagaaaa aaggagataa tgtttttaaa tttcattatc      660

aaacttgggc aattctgttt gtgtaactcc ccgactagtg gatgggagag tcccattgct      720

aaaattcagc tactcagata aattcagaat gggtcaaggc acctgcctgt ttttgttggt      780

gcacagagat tgacttgatt cagagagaca attcactcca tccctatggc agaggaatgg      840

gttagcccta atgtagaatg tcattgtttt taaaactgtt ttatatctta agagtgccgc      900

tagcaaaagc ggcc                                                        914


<210>  51
<211>  20
<212>  RNA
<213>  Homo sapiens

<400>  51
acgcacaccu auugcaagca                                                   20


<210>  52
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  52
caccgacgca cacctattgc aagca                                             25


<210>  53
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  53
aaactgcttg caataggtgt gcgtc                                             25


<210>  54
<211>  20
<212>  DNA
<213>  Homo sapiens

<400>  54
ggagaaugtc agucugaguc                                                   20


<210>  55
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  55
caccgggaga atgtcagtct gagtc                                             25


<210>  56
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  56
aaacgactca gactgacatt ctccc                                             25


<210>  57
<211>  20
<212>  RNA
<213>  Homo sapiens

<400>  57
aaacucaugu ucaagacaga                                                   20


<210>  58
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  58
caccgaaact catgttcaag acaga                                             25


<210>  59
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  59
aaactctgtc ttgaacatga gtttc                                             25


<210>  60
<211>  20
<212>  RNA
<213>  Homo sapiens

<400>  60
ggggguggga ggcugucagu                                                   20


<210>  61
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  61
caccgggggg tgggaggctg tcagt                                             25


<210>  62
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  62
aaacactgac agcctcccac ccccc                                             25


<210>  63
<211>  20
<212>  RNA
<213>  Homo sapiens

<400>  63
ucucccuccc cugccauuuu                                                   20


<210>  64
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  64
caccgtctcc ctcccctgcc atttt                                             25


<210>  65
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  65
aaacaaaatg gcaggggagg gagac                                             25


