                         SEQUENCE LISTING

<110>  Seelig, Georg
       Rosenberg, Alexander B.
       Roco, Charles
 
<120>  IN SITU COMBINATORIAL LABELING OF CELLULAR MOLECULES

<130>  53433/1900

<160>  15    

<170>  PatentIn version 3.5

<210>  1
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse transcription primer, top strand


<220>
<221>  misc_feature
<222>  (1)..(1)
<223>  n is a, c, g, or t

<400>  1
nbaaaaaaaa aaaaaaacga atgctctggc ct                                     32


<210>  2
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Reverse transcription primer, bottom strand


<220>
<221>  misc_feature
<222>  (32)..(32)
<223>  n is a, c, g, or t

<400>  2
aggccagagc attcgttttt tttttttttt vn                                     32


<210>  3
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BC_0056_S0-S1

<400>  3
cgaatgctct ggccttcgga cgatcatggg                                        30


<210>  4
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Round 1 barcodes


<220>
<221>  misc_feature
<222>  (16)..(23)
<223>  n is a, c, g, or t

<400>  4
cgcgctgcat acttgnnnnn nnncccatga tcgtccga                               38


<210>  5
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BC_0058_S2-S3

<400>  5
caagtatgca gcgcggggaa gcacgtggat                                        30


<210>  6
<211>  38
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Round 2 barcodes


<220>
<221>  misc_feature
<222>  (16)..(23)
<223>  n is a, c, g, or t

<400>  6
catcggcgta cgactnnnnn nnnatccacg tgcttccc                               38


<210>  7
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  BC_0060_S4-S5

<400>  7
agtcgtacgc cgatgcgaaa catcggccac                                        30


<210>  8
<211>  55
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Round 3 barcodes


<220>
<221>  misc_feature
<222>  (23)..(40)
<223>  n is a, c, g, or t

<400>  8
cagacgtgtg ctcttccgat ctnnnnnnnn nnnnnnnnnn gtggccgatg tttcg            55


<210>  9
<211>  191
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Stop ligation oligos, top strand


<220>
<221>  misc_feature
<222>  (1)..(29)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (76)..(83)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (114)..(121)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (152)..(169)
<223>  n is a, c, g, or t

<400>  9
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnb aaaaaaaaaa aaaaacgaat gctctggcct       60

tcggacgatc atgggnnnnn nnncaagtat gcagcgcggg gaagcacgtg gatnnnnnnn      120

nagtcgtacg ccgatgcgaa acatcggcca cnnnnnnnnn nnnnnnnnna gatcggaaga      180

gcacacgtct g                                                           191


<210>  10
<211>  191
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Stop ligation oligos, bottom strand


<220>
<221>  misc_feature
<222>  (23)..(40)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (71)..(78)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (109)..(116)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (163)..(191)
<223>  n is a, c, g, or t

<400>  10
cagacgtgtg ctcttccgat ctnnnnnnnn nnnnnnnnnn gtggccgatg tttcgcatcg       60

gcgtacgact nnnnnnnnat ccacgtgctt ccccgcgctg catacttgnn nnnnnnccca      120

tgatcgtccg aaggccagag cattcgtttt tttttttttt tvnnnnnnnn nnnnnnnnnn      180

nnnnnnnnnn n                                                           191


<210>  11
<211>  214
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  3' adapter ligation


<220>
<221>  misc_feature
<222>  (24)..(52)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (99)..(106)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (137)..(144)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (175)..(192)
<223>  n is a, c, g, or t

<400>  11
ggatgtgctg cgagaaggct agannnnnnn nnnnnnnnnn nnnnnnnnnn nnvttttttt       60

ttttttttgc ttacgagacc ggaagcctgc tagtacccnn nnnnnngttc atacgtcgcg      120

ccccttcgtg cacctannnn nnnntcagca tgcggctacg ctttgtagcc ggtgnnnnnn      180

nnnnnnnnnn nntctagcct tctcgtgtgc agac                                  214


<210>  12
<211>  214
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR #1, top strand


<220>
<221>  misc_feature
<222>  (24)..(52)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (99)..(106)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (137)..(144)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (175)..(192)
<223>  n is a, c, g, or t

<400>  12
cctacacgac gctcttccga tctnnnnnnn nnnnnnnnnn nnnnnnnnnn nnbaaaaaaa       60

aaaaaaaacg aatgctctgg ccttcggacg atcatgggnn nnnnnncaag tatgcagcgc      120

ggggaagcac gtggatnnnn nnnnagtcgt acgccgatgc gaaacatcgg ccacnnnnnn      180

nnnnnnnnnn nnagatcgga agagcacacg tctg                                  214


<210>  13
<211>  214
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR #1, bottom strand


<220>
<221>  misc_feature
<222>  (23)..(40)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (71)..(78)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (109)..(116)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (163)..(191)
<223>  n is a, c, g, or t

<400>  13
cagacgtgtg ctcttccgat ctnnnnnnnn nnnnnnnnnn gtggccgatg tttcgcatcg       60

gcgtacgact nnnnnnnnat ccacgtgctt ccccgcgctg catacttgnn nnnnnnccca      120

tgatcgtccg aaggccagag cattcgtttt tttttttttt tvnnnnnnnn nnnnnnnnnn      180

nnnnnnnnnn nagatcggaa gagcgtcgtg tagg                                  214


<210>  14
<211>  292
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR #1, top strand


<220>
<221>  misc_feature
<222>  (59)..(88)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (135)..(142)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (173)..(180)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (211)..(228)
<223>  n is a, c, g, or t

<400>  14
aatgatacgg cgaccaccga gatctacact ctttccctac acgacgctct tccgatctnn       60

nnnnnnnnnn nnnnnnnnnn nnnnnnnnba aaaaaaaaaa aaaacgaatg ctctggcctt      120

cggacgatca tgggnnnnnn nncaagtatg cagcgcgggg aagcacgtgg atnnnnnnnn      180

agtcgtacgc cgatgcgaaa catcggccac nnnnnnnnnn nnnnnnnnag atcggaagag      240

cacacgtctg aactccagtc acgatctgat ctcgtatgcc gtcttctgct tg              292


<210>  15
<211>  292
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR #2, bottom strand


<220>
<221>  misc_feature
<222>  (65)..(82)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (113)..(120)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (151)..(158)
<223>  n is a, c, g, or t

<220>
<221>  misc_feature
<222>  (205)..(234)
<223>  n is a, c, g, or t

<400>  15
caagcagaag acggcatacg agatcagatc gtgactggag ttcagacgtg tgctcttccg       60

atctnnnnnn nnnnnnnnnn nngtggccga tgtttcgcat cggcgtacga ctnnnnnnnn      120

atccacgtgc ttccccgcgc tgcatacttg nnnnnnnncc catgatcgtc cgaaggccag      180

agcattcgtt tttttttttt tttvnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnagatcg      240

gaagagcgtc gtgtagggaa agagtgtaga tctcggtggt cgccgtatca tt              292


