                         SEQUENCE LISTING

<110>  The Board of Trustees of the Leland Stanford junior 
       University
 
<120>  ENGINEERED IMMUNE CELLS AS DIAGNOSTIC PROBES OF DISEASE

<130>  221907-2430

<150>  US 62/635,664
<151>  2018-02-27

<150>  US 62/794,011
<151>  2019-01-18

<160>  8     

<170>  PatentIn version 3.5

<210>  1
<211>  9615
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Plasmid ARG1/Gluc Reporter Plamid

<400>  1
aagcttggta ccgagctcgg atccagccac catgggagtc aaagttctgt ttgccctgat       60

ctgcatcgct gtggccgagg ccaagcccac cgagaacaac gaagacttca acatcgtggc      120

cgtggccagc aacttcgcga ccacggatct cgatgctgac cgcgggaagt tgcccggcaa      180

gaagctgccg ctggaggtgc tcaaagagct ggaagccaat gcccggaaag ctggctgcac      240

caggggctgt ctgatctgcc tgtcccacat caagtgcacg cccaagatga agaagttcat      300

cccaggacgc tgccacacct acgaaggcga caaagagtcc gcacagggcg gcataggcga      360

ggcgatcgtc gacattcctg agattcctgg gttcaaggac ttggagcccc tggagcagtt      420

catcgcacag gtcgatctgt gtgtggactg cacaactggc tgcctcaaag ggcttgccaa      480

cgtgcagtgt tctgacctgc tcaagaagtg gctgccgcaa cgctgtgcga cctttgccag      540

caagatccag ggccaggtgg acaagatcaa gggggccggt ggtgactaag cggccgcttc      600

gagcagacat gataagatac attgatgagt ttggacaaac cacaactaga atgcagtgaa      660

aaaaatgctt tatttgtgaa atttgtgatg ctattgcttt atttgtaacc attataagct      720

gcaataaaca agttaacaac aacaattgca ttcattttat gtttcaggtt cagggggagg      780

tgtgggaggt tttttaaagc aagtaaaacc tctacaaatg tggtacaacc ggtctagtta      840

ttaatagtaa tcaattacgg ggtcattagt tcatagccca tatatggagt tccgcgttac      900

ataacttacg gtaaatggcc cgcctggctg accgcccaac gacccccgcc cattgacgtc      960

aataatgacg tatgttccca tagtaacgcc aatagggact ttccattgac gtcaatgggt     1020

ggagtattta cggtaaactg cccacttggc agtacatcaa gtgtatcata tgccaagtac     1080

gccccctatt gacgtcaatg acggtaaatg gcccgcctgg cattatgccc agtacatgac     1140

cttatgggac tttcctactt ggcagtacat ctacgtatta gtcatcgcta ttaccatggt     1200

gatgcggttt tggcagtaca tcaatgggcg tggatagcgg tttgactcac ggggatttcc     1260

aagtctccac cccattgacg tcaatgggag tttgttttgg caccaaaatc aacgggactt     1320

tccaaaatgt cgtaacaact ccgccccatt gacgcaaatg ggcggtaggc gtgtacggtg     1380

ggaggtctat ataagcagag ctctctggct aactagagaa cccactgctt actggcttat     1440

cgaaatttta attaacgttg gcaccatggt gagcaagggc gaggagctgt tcaccggggt     1500

ggtgcccatc ctggtcgagc tggacggcga cgtaaacggc cacaagttca gcgtgtccgg     1560

cgagggcgag ggcgatgcca cctacggcaa gctgaccctg aagttcatct gcaccaccgg     1620

caagctgccc gtgccctggc ccaccctcgt gaccaccctg acctacggcg tgcagtgctt     1680

cagccgctac cccgaccaca tgaagcagca cgacttcttc aagtccgcca tgcccgaagg     1740

ctacgtccag gagcgcacca tcttcttcaa ggacgacggc aactacaaga cccgcgccga     1800

ggtgaagttc gagggcgaca ccctggtgaa ccgcatcgag ctgaagggca tcgacttcaa     1860

ggaggacggc aacatcctgg ggcacaagct ggagtacaac tacaacagcc acaacgtcta     1920

tatcatggcc gacaagcaga agaacggcat caaggtgaac ttcaagatcc gccacaacat     1980

cgaggacggc agcgtgcagc tcgccgacca ctaccagcag aacaccccca tcggcgacgg     2040

ccccgtgctg ctgcccgaca accactacct gagcacccag tccgccctga gcaaagaccc     2100

caacgagaag cgcgatcaca tggtcctgct ggagttcgtg accgccgccg ggatcactct     2160

cggcatggac gagctgtaca agtaggttta aacactagaa ataattctta ctgtcatgcc     2220

aagtaagatg cttttctgtg ctgcaatagc aggcatgctg gggatgcggt gggctctatg     2280

gcttctgagg cggaaagaac tagacccagc tttcttgtac aaagttggca ttataagaaa     2340

gcattgctta tcaatttgtt gcaacgaaca ggtcactatc agtcaaaata aaatcattat     2400

ttgccatcca ggtcgagtgt ggaatgtgtg tcagttaggg tgtggaaagt ccccaggctc     2460

cccagcaggc agaagtatgc aaagcatgca tctcaattag tcagcaacca ggtgtggaaa     2520

gtccccaggc tccccagcag gcagaagtat gcaaagcatg catctcaatt agtcagcaac     2580

catagtcccg cccctaactc cgcccatccc gcccctaact ccgcccagtt ccgcccattc     2640

tccgccccat ggctgactaa ttttttttat ttatgcagag gccgaggccg cctctgcctc     2700

tgagctattc cagaagtagt gaggaggctt ttttggaggc ctaggctttt gcaaaaagct     2760

cccgggagct tgtatatcca ttttcggatc tgatcaaaga tccaccggag cttaccatga     2820

ccgagtacaa gcccacggtg cgcctcgcca cccgcgacga cgtccccagg gccgtacgca     2880

ccctcgccgc cgcgttcgcc gactaccccg ccacgcgcca caccgtcgat ccggaccgcc     2940

acatcgagcg ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg     3000

gcaaggtgtg ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg     3060

tcgaagcggg ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc     3120

ggctggccgc gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg     3180

cgtggttcct ggccaccgtc ggcgtctcgc ccgaccacca gggcaagggt ctgggcagcg     3240

ccgtcgtgct ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga     3300

cctccgcgcc ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg     3360

tcgaggtgcc cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgacgcc     3420

cgccccacga cccgcagcgc ccgaccgaaa ggagcgcacg accccatgca tcggtaccta     3480

gagtcggggc ggccggccgc ttcgagcaga catgataaga tacattgatg agtttggaca     3540

aaccacaact agaatgcagt gaaaaaaatg ctttatttgt gaaatttgtg atgctattgc     3600

tttatttgta accattataa gctgcaataa acaagttaac aacaacaatt gcattcattt     3660

tatgtttcag gttcaggggg aggtgtggga ggttttttaa agcaagtaaa acctctacaa     3720

atgtggtaaa atcgctgcag ctctggcccg tgtctcaaaa tctctgatgt tacattgcac     3780

aagataaaaa tatatcatca tgaacaataa aactgtctgc ttacataaac agtaatacaa     3840

ggggtgttat gagccatatt caacgggaaa cgtcgaggcc gcgattaaat tccaacatgg     3900

atgctgattt atatgggtat aaatgggctc gcgataatgt cgggcaatca ggtgcgacaa     3960

tctatcgctt gtatgggaag cccgatgcgc cagagttgtt tctgaaacat ggcaaaggta     4020

gcgttgccaa tgatgttaca gatgagatgg tcagactaaa ctggctgacg gaatttatgc     4080

ctcttccgac catcaagcat tttatccgta ctcctgatga tgcatggtta ctcaccactg     4140

cgatccccgg aaaaacagca ttccaggtat tagaagaata tcctgattca ggtgaaaata     4200

ttgttgatgc gctggcagtg ttcctgcgcc ggttgcattc gattcctgtt tgtaattgtc     4260

cttttaacag cgatcgcgta tttcgtctcg ctcaggcgca atcacgaatg aataacggtt     4320

tggttgatgc gagtgatttt gatgacgagc gtaatggctg gcctgttgaa caagtctgga     4380

aagaaatgca taaacttttg ccattctcac cggattcagt cgtcactcat ggtgatttct     4440

cacttgataa ccttattttt gacgagggga aattaatagg ttgtattgat gttggacgag     4500

tcggaatcgc agaccgatac caggatcttg ccatcctatg gaactgcctc ggtgagtttt     4560

ctccttcatt acagaaacgg ctttttcaaa aatatggtat tgataatcct gatatgaata     4620

aattgcagtt tcatttgatg ctcgatgagt ttttctaatc agaattggtt aattggttgt     4680

aacattattc agattgggcc ccgttccact gagcgtcaga ccccgtagaa aagatcaaag     4740

gatcttcttg agatcctttt tttctgcgcg taatctgctg cttgcaaaca aaaaaaccac     4800

cgctaccagc ggtggtttgt ttgccggatc aagagctacc aactcttttt ccgaaggtaa     4860

ctggcttcag cagagcgcag ataccaaata ctgttcttct agtgtagccg tagttaggcc     4920

accacttcaa gaactctgta gcaccgccta catacctcgc tctgctaatc ctgttaccag     4980

tggctgctgc cagtggcgat aagtcgtgtc ttaccgggtt ggactcaaga cgatagttac     5040

cggataaggc gcagcggtcg ggctgaacgg ggggttcgtg cacacagccc agcttggagc     5100

gaacgaccta caccgaactg agatacctac agcgtgagct atgagaaagc gccacgcttc     5160

ccgaagggag aaaggcggac aggtatccgg taagcggcag ggtcggaaca ggagagcgca     5220

cgagggagct tccaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc     5280

tctgacttga gcgtcgattt ttgtgatgct cgtcaggggg gcggagccta tggaaaaacg     5340

ccagcaacgc ggccttttta cggttcctgg ccttttgctg gccttttgct cacatgttct     5400

ttcctgcgtt atcccctgat tctgtggata accgtattac cgctagcatg gatctcgggg     5460

acgtctaact actaagcgag agtagggaac tgccaggcat caaataaaac gaaaggctca     5520

gtcggaagac tgggcctttc gttttatctg ttgtttgtcg gtgaacgctc tcctgagtag     5580

gacaaatccg ccgggagcgg atttgaacgt tgtgaagcaa cggcccggag ggtggcgggc     5640

aggacgcccg ccataaactg ccaggcatca aactaagcag aaggccatcc tgacggatgg     5700

cctttttgcg tttctacaaa ctcttcctgt tagttagtta cttaagctcg ggccccaaat     5760

aatgatttta ttttgactga tagtgacctg ttcgttgcaa caaattgata agcaatgctt     5820

ttttataatg ccaactttgt acaaaaaagc aggcttcgaa ggagatagaa ccagatcttg     5880

gaattcagat tgccaggaat ataccagaca ctggagctag gtaaaggcct cctgtacacc     5940

catacaagga gcgcttctct gccttcaaat atcaacaagt tttaaatccc cagtgtgtag     6000

tacagagcag gctgggtgga tttgaggtct gtgttcttag gaattgaacc tttaaagcgc     6060

agtatacatt ctctacgcta aggaaagact tgggctggga aaagtgggct ctgccaagac     6120

tcaggccgat gacctcgtcc cctccagagc agtgggtctc aagcttccta actctccaac     6180

cttttaatac agttcttatg ttgcagtggc cccaatcatc aaattgtttt gttgttacag     6240

cataactata attttcctag ttataaagca tactgtaaac aactgtgttt tctgatggtt     6300

ttagggtaac cgctgtgaaa ggatctatca gccccaaaag gaattgggat ccacaggtta     6360

agaaccagtg ccttagatgt tctgaggcca cagctttgga gattgaaaag acagtccttt     6420

gtgaagacta gaatcttagg ccaaggtgct tgctgccaag cctgacaccc cagtctgact     6480

ctcagaaccc atacagcaag gagaacctcc tcagggccat ggtatgtgtt tcccaacacg     6540

gacacacaca caatcacaca gagtaaaggg ttttttaatt aagcaagaaa tacagtttac     6600

acatatgtct gcataaggtc acggagggtg gtagccgacg agagaccagc tcatcttcaa     6660

taaggaagtc agagagcaga aggctttgtc agcagggcaa gactatactt tgttaggaag     6720

tgaggcattg ttcagacttc cttatgcttt cttatgaaca ggctgtatta gccaacagtc     6780

ctgtctgtac gtgagttgtg ccactttggg ttgagggtgc tgggctaaca cagatcttag     6840

ttaagcattt ccttgtcctt tgattcctca atgacccaga acaggcaaac aatacgatac     6900

ttatgtttga tgaattagat gactgcatct acaactgaac ttgtgcactg agttctggat     6960

ggtcgcctga aggagaacgc agggaggcag gcgatacttt aataggactg actgtgaggg     7020

taaatcggtg tcatacatgg aaccgtcgtg tgtatggaga tacccagaac aataaagacc     7080

caagaaaaac agatagtcaa gaaatcatga gttttactta atcagggcgt tttgatcagt     7140

cagtccaatg atgccaatga tgaaaagtca ccctcaaact gcccgaggga agactttcag     7200

gaaaagccct ggtgataaag tttaacagca aatacctatg aatgaatgta taaagctagt     7260

aacggccgta gcactgtttt caaaacgtag tcaccggctc actctacatt tgcgagaccc     7320

cgacagaagt aaatgtaagg tcaagcgatt ttgaaaaaga ggagcaccag ttcctttcct     7380

gcagctctaa cgtcctacca atggggctgc atggactggt gcagccacag gtgatgagcc     7440

cagagcatag aggaaactgg aagatggagc agcgtatcgt ttataacagc aacttggcat     7500

ctgatggaga tagctcagtg gtaacgtggg gagtctgtcc atttggtgct ggtggggaaa     7560

ctgggagaga caaaggggaa atggaggatt taaacaaaat acaaaaaaaa aaaatggacg     7620

caacagtcag caatcactgt gaatagcaaa ttcttcatgc atccaagact taagcccagc     7680

atctttcagg caggaaaaca atctacccct gaatggcatt tttcttcttt tctttttacc     7740

tttggggcag gttctgtgtt gacctttgaa ctaaccctat aaccccagca ggtgttgaac     7800

ctataatccc cctgcctcat cctctcaaat agctggaatt tgtgggccag caccaagagg     7860

cccaaagaaa gagaaagttt aaattaaata gaagaaaatg tagaggtatt gataggtggt     7920

ggtatcacac acctttaatc ccagcactca ggaggcagtg acagattgct atctgtgagt     7980

tcaaggttag gctggtctat agggctagtt ctagggtagc cagagccaca caaagaaaac     8040

atgtctccaa aaagcaaaca aaaatgtaga ggtgcacatt tgggatctgg gagcaggtaa     8100

aacttaaatt cctagctagc ttcaaatata taggaaaatt ctatcttaca taaatcaatt     8160

ttttaaaaaa atctataacc gtatatcaga aaaacatagt aagatgaaaa atatatttga     8220

aaaggaggta ccaaaatggt cctgagggac tttggcttct tgatttattc attcaataaa     8280

tgcaatacat ttattcagtc aataagtcaa tgtttatttt gtattgaacg attctatgta     8340

ctgatggtag agggaacaga atctttcttg aggtattaaa attctgggtg ctttttgtcc     8400

tcacaaggtt aaagaaattt acttctgaca tgtgggtttt ctttttaaaa ttataatcat     8460

gtaactttgt aactgggaga atacttggtt gtgtttcttc taaattaata cttttaaaaa     8520

tatttcttta gtgttggggg tggctttaca cagggaccgg accacatcac ccacgtggag     8580

gtcagagatc aacttggagg agttgactct ttccttgcac caaatgggtt ctgcgggtca     8640

aactcgggtc atcgggcttg gtgttaccgg ctggcctctc tcatctgccc tagatctcag     8700

ggggccctgc tgacactctg ctggtgtgta gattagaatc gcggcagctc ggcgggtgca     8760

gaatgcccat tgctccgttt tgattcttct gcaacctgta tgtgactagc aacctcacca     8820

agctgcagtc tcttcctcgg caaaacagca taagaatgat tctcagtctg aagttagttt     8880

aaagaggaaa caggaaacga aagaacatta actagaatag cacttggcac acgacagaca     8940

actcatatta gctagtttgc tttccctatc ttgggatatc atgattccaa aaatgagatt     9000

ttcccggaga ctgtatttca aaaatagaac tgctttgggt tgtcagggaa ataaatgatg     9060

ccttcctgaa ataataataa taataacaac aacaacaaca acaacaatat aaaacaaaaa     9120

ccagccccat gctttcctag acagtgtaac ctggtgacac atgaaatgtg tctcactttc     9180

cccagaactt gaagccttga ctcaggatgc tcaacaggag ggaagtaaga gacaccaccc     9240

cccacccccg cttgctgttt tagcctcacc ttgcaagtcc ccagtggact taaatcttgg     9300

aaaaggtgag caccctgccc tgaggtgccc aggccggaag cctagcactt cacatgaggt     9360

tatgaaatca cacataattg tcaattgtct gaggagagat taatgtcatc cagctggctt     9420

tttcaaaagg gtgtgaactg gacggatgaa taatgctcag agggaagaat ggtagttcct     9480

ctgatgggga ggttctgttg actctgtcat tcttccattc ggtgggcgga gccagttgtt     9540

ggataaacag atccaacctg attataaggg gggaaaaaga tgtgccctct gtcttttagg     9600

gttacggccg gtgga                                                      9615


<210>  2
<211>  20
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Deleted region from Locus chr7_13872039

<400>  2
caggccagtt tcatcccttc                                                   20


<210>  3
<211>  19
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Forward primer for deletion from chr7_13872039

<400>  3
attcccaaag cgtcgaact                                                    19


<210>  4
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Reverse primer for deletion from chr7_13872039

<400>  4
ctaccattgg aaggacgatc ac                                                22


<210>  5
<211>  13
<212>  DNA
<213>  Artificial sequence

<220>
<223>  LNA Probe for deletion from chr7_13872039 with locked nucleotides
       at n = 3,4,6,8,9,11

<400>  5
taaggacatc cat                                                          13


<210>  6
<211>  23
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Forward primer for deletion from chr19_39237841

<400>  6
caattcttta ggtgtaccct gtg                                               23


<210>  7
<211>  22
<212>  DNA
<213>  Artificial sequence

<220>
<223>  Reverse primer for deletion from chr19_39237841

<400>  7
aaacaatgga gcagatgaca tt                                                22


<210>  8
<211>  10
<212>  DNA
<213>  Artificial sequence

<220>
<223>  LNA Probe for deletion from chr19_39237841 with locked 
       nucleotides at n = 2,3,4,6,8,9

<400>  8
ttctcgctgt                                                              10


