                               SEQUENCE LISTING

<110> COMPLETE GENOMICS, INC.
      BGI SHENZHEN
 
<120> SINGLE TUBE BEAD-BASED DNA CO-BARCODING FOR ACCURATE AND 
      COST-EFFECTIVE SEQUENCING, HAPLOTYPING, AND ASSEMBLY

<130> 092171-1130724-5068-WO

<140> PCT/US2019/031161
<141> 2019-05-07

<150> 62/687,159
<151> 2018-06-19

<150> 62/672,501
<151> 2018-05-16

<150> 62/668,757
<151> 2018-05-08

<160> 31    

<170> PatentIn version 3.5

<210> 1
<211> 28
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 1
aaaaaaaacc cgtagccatg tcgttctg                                          28


<210> 2
<211> 32
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (7)..(26)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (7)..(26)
<223> This region may encompass 4-20 nucleotides

<400> 2
ctctggnnnn nnnnnnnnnn nnnnnntctg cg                                     32


<210> 3
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 3
ccagagcaga acgacatggc tacggg                                            26


<210> 4
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (35)..(54)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (35)..(54)
<223> This region may encompass 4-20 nucleotides 

<400> 4
aaaaaaaacc cgtagccatg tcgttctgct ctggnnnnnn nnnnnnnnnn nnnntctgcg       60


<210> 5
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (1)..(20)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (1)..(20)
<223> This region may encompass 4-20 nucleotides 

<400> 5
nnnnnnnnnn nnnnnnnnnn ccagagcaga acgacatggc tacggg                      46


<210> 6
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (35)..(54)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (35)..(54)
<223> This region may encompass 4-20 nucleotides 

<400> 6
aaaaaaaacc cgtagccatg tcgttctgct ctggnnnnnn nnnnnnnnnn nnnntctgcg       60


<210> 7
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (1)..(20)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (1)..(20)
<223> This region may encompass 4-20 nucleotides 

<400> 7
nnnnnnnnnn nnnnnnnnnn ccagagcaga acgacatggc tacggg                      46


<210> 8
<211> 80
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (35)..(54)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (35)..(54)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (61)..(80)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (61)..(80)
<223> This region may encompass 4-20 nucleotides 

<400> 8
aaaaaaaacc cgtagccatg tcgttctgct ctggnnnnnn nnnnnnnnnn nnnntctgcg       60

nnnnnnnnnn nnnnnnnnnn                                                   80


<210> 9
<211> 78
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (7)..(26)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (7)..(26)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (33)..(52)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (33)..(52)
<223> This region may encompass 4-20 nucleotides 

<400> 9
ggaaggnnnn nnnnnnnnnn nnnnnncgca gannnnnnnn nnnnnnnnnn nnccagagca       60

gaacgacatg gctacggg                                                     78


<210> 10
<211> 121
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide


<220>
<221> modified_base
<222> (35)..(54)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (35)..(54)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (61)..(80)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (61)..(80)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (87)..(106)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (87)..(106)
<223> This region may encompass 4-20 nucleotides 

<400> 10
aaaaaaaacc cgtagccatg tcgttctgct ctggnnnnnn nnnnnnnnnn nnnntctgcg       60

nnnnnnnnnn nnnnnnnnnn ccttccnnnn nnnnnnnnnn nnnnnntagc atggactatg      120

g                                                                      121


<210> 11
<211> 113
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide


<220>
<221> modified_base
<222> (16)..(35)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (16)..(35)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (42)..(61)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (42)..(61)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (68)..(87)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (68)..(87)
<223> This region may encompass 4-20 nucleotides 

<400> 11
ccatagtcca tgctannnnn nnnnnnnnnn nnnnnggaag gnnnnnnnnn nnnnnnnnnn       60

ncgcagannn nnnnnnnnnn nnnnnnncca gagcagaacg acatggctac ggg             113


<210> 12
<211> 121
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide


<220>
<221> modified_base
<222> (35)..(54)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (35)..(54)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (61)..(80)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (61)..(80)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (87)..(106)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (87)..(106)
<223> This region may encompass 4-20 nucleotides 

<400> 12
aaaaaaaacc cgtagccatg tcgttctgct ctggnnnnnn nnnnnnnnnn nnnntctgcg       60

nnnnnnnnnn nnnnnnnnnn ccttccnnnn nnnnnnnnnn nnnnnntagc atggactatg      120

g                                                                      121


<210> 13
<211> 121
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide


<220>
<221> modified_base
<222> (35)..(54)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (35)..(54)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (61)..(80)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (61)..(80)
<223> This region may encompass 4-20 nucleotides 

<220>
<221> modified_base
<222> (87)..(106)
<223> a, c, t, g, unknown or other

<220>
<221> misc_feature
<222> (87)..(106)
<223> This region may encompass 4-20 nucleotides 

<400> 13
aaaaaaaacc cgtagccatg tcgttctgct ctggnnnnnn nnnnnnnnnn nnnntctgcg       60

nnnnnnnnnn nnnnnnnnnn ccttccnnnn nnnnnnnnnn nnnnnntagc atggactatg      120

g                                                                      121


<210> 14
<211> 27
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 14
aaaaaaaaaa tgtgagccaa ggagttg                                           27


<210> 15
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 15
ccagagcaac tccttggctc aca                                               23


<210> 16
<211> 43
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 16
gcacugacga caugaucacc aaggaucgcc auaguccaug cua                         43


<210> 17
<211> 58
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 17
cgatccttgg tgatcatgtc gtcagtgctt gtcttcctaa gatgtgtata agagacag         58


<210> 18
<211> 38
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 18
gcctccctcg cgccatcaga gatgtgtata agagacag                               38


<210> 19
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide

<400> 19
ctguctcuta tacacauct                                                    19


<210> 20
<211> 17
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 20
tgtgagccaa ggagttg                                                      17


<210> 21
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 21
gcctccctcg cgccatcag                                                    19


<210> 22
<211> 38
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 22
gcctccctcg cgccatcaga gatgtgtata agagacag                               38


<210> 23
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 23
cgagaacgtc ttgtgagcca aggagttgct ctgg                                   34


<210> 24
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 24
cgtcagtgct tgtcttccta agatgtgtat aagagacag                              39


<210> 25
<211> 31
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 25
tgatcaccaa ggatcgccat agtccatgct a                                      31


<210> 26
<211> 40
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 26
ctgtctctta tacacatctt aggaagacaa gcactgacga                             40


<210> 27
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 27
ctgatggcgc gagggaggc                                                    19


<210> 28
<211> 12
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 28
tcgcgccatc ag                                                           12


<210> 29
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 29
caactccttg gctcacacgg agggagcgcg gtagtc                                 36


<210> 30
<211> 43
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 30
gcacugacga caugaucacc aaggaucgcc auaguccaug cua                         43


<210> 31
<211> 13
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 31
cccccccccc ccc                                                          13


