﻿               SEQUENCE LISTING

<110> LEXOGEN GMBH

<120> Nucleic acid amplification and identification method

<130> R 75980

<150> EP18212743
<151> 2018-12-14

<160> 67

<170> BiSSAP 1.3

<210> 1
<211> 41
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 41
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 1
nnnnnnagat cggaagagca cacgtctgaa ctccagtcac n                         41


<210> 2
<211> 35
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 35
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 2
nnnnnnnnnn agatcggaag agcacacgtc tgaan                                35


<210> 3
<211> 43
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 43
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 3
nnnnnnnnnn agatcggaag agcgtcgtgt agggaaagag tgn                       43


<210> 4
<211> 34
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 34
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 4
nnnnnnnnnn agatcggaag agcgtcgtgt aggn                                 34


<210> 5
<211> 44
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10,11
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 44
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 5
nnnnnnnnnn nagatcggaa gagcgtcgtg tagggaaaga gtgn                      44


<210> 6
<211> 45
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10,11,12
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 45
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 6
nnnnnnnnnn nnagatcgga agagcgtcgt gtagggaaag agtgn                     45


<210> 7
<211> 36
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10,11,12
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 36
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 7
nnnnnnnnnn nnagatcgga agagcgtcgt gtaggn                               36


<210> 8
<211> 34
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 34
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 8
nnnnnnnnnn agatcggaag agcgtcgtgt aggn                                 34


<210> 9
<211> 36
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10,11,12
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 36
<223> /mod_base="OTHER"
      /note="3' Inverted dT (reverse linkage)"

<400> 9
nnnnnnnnnn nnagatcgga agagcgtcgt gtaggn                               36


<210> 10
<211> 33
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<220> 
<221> modified_base
<222> 1
<223> /mod_base="OTHER"
      /note="5' phosphorylated; a or g or c or t"

<220> 
<221> misc_difference
<222> 2,3,4,5,6,7,8,9,10,11,12
<223> /note="a or g or c or t"

<220> 
<221> modified_base
<222> 33
<223> /mod_base="OTHER"
      /note="g, 3' Spacer C3"

<400> 10
nnnnnnnnnn nntggaattc tcgggtgcca agn                                  33


<210> 11
<211> 53
<212> DNA
<213> Artificial Sequence

<220> 
<223> oligo

<400> 11
gtgactggag ttcagacgtg tgctcttccg atcttttttt tttttttttt ttv            53


<210> 12
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 12
cgatttctaa agggaattcg agctcgcatt ttgaaaattc tatggaagag ctagcatctc     60

tgacgaaaac agcag                                                      75


<210> 13
<211> 68
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 13
cctttgggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaaaccag                                                              68


<210> 14
<211> 68
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 14
caaaacggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaaacaac                                                              68


<210> 15
<211> 66
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 15
agtggtggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaatgc                                                                66


<210> 16
<211> 70
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 16
caaaatggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaaacagcgt                                                            70


<210> 17
<211> 65
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 17
tcggacggga attcgagctc gcattttgaa aattctatgg aagagctagc atctcttacg     60

aaaac                                                                 65


<210> 18
<211> 66
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 18
ggggacggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgaca     60

aaaaca                                                                66


<210> 19
<211> 73
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 19
cccgagggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaaacggcag aca                                                        73


<210> 20
<211> 71
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 20
aatacaggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaaacagaga g                                                          71


<210> 21
<211> 70
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 21
caaaatggga attcgagctc gcattttgaa aattctatgg aagagctagc atctctgacg     60

aaaacagcgt                                                            70


<210> 22
<211> 74
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 22
atttggggaa ttcgagctcg cattttgaaa attctatgga agagctagca tctctgacga     60

aaacagcagg cgga                                                       74


<210> 23
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 23
aatggggaat tcgagctcgc attttgaaaa ttctatggaa gagctagcat ctctgacgaa     60

aacagcaatc ggaaa                                                      75


<210> 24
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 24
aaggggaatt cgagctcgca ttttgaaaat tctctggaag agctagcatc tctgacgaaa     60

acagcagaac agaaa                                                      75


<210> 25
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 25
ggggaattcg agctcgcatt ttgaaaatac tatggaagag ctagcatctc tgacgaaaac     60

agcagacgaa aaagt                                                      75


<210> 26
<211> 61
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 26
gggaattcga gctcgcattt tgaaaattct atggaagagc tagcatctct gactactaca     60

g                                                                     61


<210> 27
<211> 60
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 27
aagatctcgc attttgaaaa ttctatggaa gagctagcat ctctgacgaa aacagcagaa     60


<210> 28
<211> 74
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 28
cgagctcgca ttttgaaaat tctatggaag agctagcatc tctgacgaaa acagcagacg     60

gaaaaggaga gacc                                                       74


<210> 29
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 29
cgagctcgca ttttgaaaat tctatggaag agctagcatc tctgacgaaa acagcagacg     60

gaaaagtact gacca                                                      75


<210> 30
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 30
cgagctcgca ttttgaaaat tctatggaag agctagcacc tctgacgaaa acagcagacg     60

gaaaaggact gaaaa                                                      75


<210> 31
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 31
cgagctcgca ttttgaaaat tctatggaag agctagcatc tctgacgaaa acagcagacg     60

gaaaagtact gagcc                                                      75


<210> 32
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 32
cgagctcgca ttttgaaaat tctatggaag agctagcacc tctgacgaaa acagcagacg     60

gaaaaggact gaaaa                                                      75


<210> 33
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 33
cgagctcgca ttttgaaaat tctatggaag agctagcatc tctgacgaaa acagcagacg     60

gaaaagtact gactc                                                      75


<210> 34
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 34
cgagctcgca ttttgaaaat tctatggaag agctagcatc tctgacgaaa acagcagacg     60

gaaaagtact gacca                                                      75


<210> 35
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 35
cgagctcgca ttttgaaaat tctatggaag agctagcatc tctgacgaaa acagcagacg     60

gaaaagtaca aaacc                                                      75


<210> 36
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 36
gagctcgcat tttgaaaatt ctatggaaga gctagcatct ctgacgaaaa cagcagacgg     60

aaaagtagct gacca                                                      75


<210> 37
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 37
agctcgcatt ttgaaaattc tatggaagag ctagcatctc tgacgaaaac agcagacgga     60

aaagtactga ccaga                                                      75


<210> 38
<211> 75
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 38
gctcgcattt tgaaaattct atggaagagc tagcatctct gacgaaaaca gcagacggaa     60

aagtacagac ccaac                                                      75


<210> 39
<211> 74
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 39
cgcattttga aaattctatg gaagagctag catctctgac gaaaacagca gacggaaaag     60

tactgaccag ctag                                                       74


<210> 40
<211> 73
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 40
cgcattttga aaattctatg gaagagctag catctctgac gaaaacagca gacggaaaag     60

tactgaccat gca                                                        73


<210> 41
<211> 74
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 41
cgcattttga aaattctatg gaagagctag catctctgac gaaaacagca gacggaaaag     60

tactgaccag ccac                                                       74


<210> 42
<211> 73
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 42
cgcattttga aaattctatg gaagagctag catctctgac gaaaacagca gacggaaaag     60

tactgaccag cat                                                        73


<210> 43
<211> 129
<212> DNA
<213> Artificial Sequence

<220> 
<223> consensus sequence

<400> 43
ataaattgag cccgcagcct cccgcttcgc tctctgctcc tcctgttcga cagtcagccg     60

catcttcttt tgcgtcgcca gccgagccac atcgctcaga caccatgggg aaggtgaagg    120

tcggagtca                                                            129


<210> 44
<211> 104
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 44
acgtgtgctc gtcactacct ccccgggtgc tctctgctcc tcctgttcga cagtcagccg     60

catcttcttt tgcgtcgcca gccgagccac atcgctcaga cacc                     104


<210> 45
<211> 129
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 45
gaaaattgag cccgcagcct cccgcttcgc tctctgctcc tcctgttcga cagtcagccg     60

catcttcttt tgcgtcgcca gccgagccac atcgctcaga caccatgggg aaggtgaagg    120

tcggagtca                                                            129


<210> 46
<211> 122
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 46
aaaatgcatt agaggaactg taaaaatctg ctcctccgtt cgacagtcag ccgcatcttc     60

ttttgcgtcg ccagccgagc cacatcgctc agacaccatg gggaaggtga aggtcggagt    120

ca                                                                   122


<210> 47
<211> 122
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 47
ctagaggaga ttggccaacg agattcactg gactcctgtt cgacagtcag ccgcatcttc     60

ttttgcgtcg ccagccgagc cacatcgctg agacaccatg gggaaggtga aggtcggagt    120

ca                                                                   122


<210> 48
<211> 118
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 48
ttttctgaac gctctggccg ctctgctcct cctgttcgac agtcagccgc ctcttcgttt     60

gcgtcgccag ccgagccaca tagctcagac accaagggga aggtgaaggt cggagtca      118


<210> 49
<211> 114
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 49
accgagcacc agctttctcc gacgccggga agtcgcagtc agccgcatct tcttttgcgt     60

cgccagccga gccacatcgc tcagacacca tggggaaggt gaaggtcgga gtca          114


<210> 50
<211> 112
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 50
aacgtgtgct ggctctctgc tcctcctgtt cgacagtcag ccgcatcttc ttttgcgtcg     60

ccagccgagc cacatcgctc agacaccatg gggaaggtga aggtcggagt ca            112


<210> 51
<211> 110
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 51
ttgctttggg ctctctgctc ctcctgttcg acagtcagcc gcatcttctt ttgcgtcgcc     60

agccgagcca catcgctcag acaccatggg gaaggtgaag gtcggagtca               110


<210> 52
<211> 106
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 52
gatgggctct ctgctcctcc tgttcgacag tcagccgcat cttcttttgc gtcgccagcc     60

gagccacatc gctcagacac catggggaag gtgaaggtcg gagtca                   106


<210> 53
<211> 106
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 53
atagggctct ctgctcctcc tgttcgacag tcagccgcat cttcttttgc gtcgccagcc     60

gagccacatc gctcagacac catggggaag gcgaaggtcg gagtca                   106


<210> 54
<211> 106
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 54
atctggctct ctgctcctcc tgttcgacag tcagccgcat cttcttttgc gtcgccagcc     60

gagccacatc gctgagacac catggggaag gtgaaggtcg gagtca                   106


<210> 55
<211> 106
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 55
acgtggctct ctgctcctcc tgttcgacag tcagccgcat cttcttttgc gtcgccagcc     60

gagccacatc gctcagacac catggggaag gtgaaggtcg gagtca                   106


<210> 56
<211> 106
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 56
acgtggctct ctgctcctcc tgttcgacag tcagccgcat cttcttttgc gtcgccagcc     60

gagccacatc gctcagacac catggggaag gtgaaggtcg gagtca                   106


<210> 57
<211> 97
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 57
ttgcggctct ctgctcctcc tgttcgacag tcagccgcat cttcttttgc gtcgccagcc     60

gagccacatc gctcagacac catggggaag cggaaca                              97


<210> 58
<211> 82
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 58
gggggctctc tgctcctcct gttcgacagt cagccgcatc ttcttttgcg tcgccagccg     60

agccacatcg ctcagacccc ac                                              82


<210> 59
<211> 105
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 59
aatggctctc tgctcctcct gttcgacagt cagccgcatc ttcttttgcg tcgccagccg     60

agccacatcg ctcagacacc atggggaagg tgaaggtcgg agtca                    105


<210> 60
<211> 105
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 60
atcggctctc tgctcctcct gttcgacagt cagccgcatc ttcttttgcg tcgccagccg     60

agccacatcg ctcagacacc atggggaagg tgaaggtcgg agtca                    105


<210> 61
<211> 105
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 61
attggctctc tgctcctcct gttcgacagt cagccgcatc ttcttttgcg tcgccagccg     60

agccacatcg ctcagacacc atggggaagg tgaaggtcgg agtca                    105


<210> 62
<211> 57
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 62
gttggctctc tgctcctcct gttcgacagt cagccgcatc ttcttttgca atcgcca        57


<210> 63
<211> 104
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 63
atggctctct gctcctcctg ttcgacagtc agccgcatct tcttttgcgt cgccagccga     60

gccacatcgc tcagacacca tggggaaggt gaaggtcgga gtca                     104


<210> 64
<211> 104
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 64
ttggctctct gctcctcctg ttcgacagtc agccgcatct tcttttgcgt cgccagccga     60

gccacatcgc tcagacacca tggggaaggt gaaggtcgga gtca                     104


<210> 65
<211> 82
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 65
ggggctctct gctcctcctg ttcgacagtc agccgcatct tcttttgcgt cgccagccga     60

gccacatcgc tcagaacagc ca                                              82


<210> 66
<211> 104
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 66
gtggctctct gctcctcctg ttcgacagtc agccgcatct tcctttgcgt cgccagccga     60

gccacatcgc tcagacacca tggggaaggt gaaggtcgga gtca                     104


<210> 67
<211> 103
<212> DNA
<213> Artificial Sequence

<220> 
<223> sequencing read

<400> 67
gggctctctg ctcctcctgt tcgacagtca gccgcatctt cttttgcgtc gccagccgag     60

ccacatcgct cagacaccat ggggaaggtg aaggtcggag tca                      103


