                         SEQUENCE LISTING

<110>  CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE
       CENTRE HOSPITALIER UNIVERSITAIRE DE MONTPELLIER
       UNIVERSITE DE MONTPELLIER
 
<120>  Methode d'identification de cellules infectees

<130>  BR106609/RIM

<150>  FR 18/72978
<151>  2018-12-14

<160>  22    

<170>  PatentIn version 3.5

<210>  1
<211>  189
<212>  PRT
<213>  Human immunodeficiency virus

<400>  1

Met Pro Gln Thr Val Ser Cys Asn Arg Cys Cys Cys Ala Ser Ile Ala 
1               5                   10                  15      


Leu Ser Lys Leu Phe Cys Cys Cys Thr Ile Pro Asp Asn Asn Cys Leu 
            20                  25                  30          


Ala Cys Thr Val Ser Val Ile Glu Ala Ala Pro Ile Val Leu Pro Ala 
        35                  40                  45              


Ala Pro Lys Asn Pro Arg Asn Lys Ala Pro Ile Pro Thr Ala Leu Phe 
    50                  55                  60                  


Ser Leu Cys Thr Thr Leu Leu Phe Ala Leu Val Gly Ala Thr Pro Asn 
65                  70                  75                  80  


Gly Ser Ile Phe Thr Thr Leu Tyr Leu Tyr Asn Ser Leu Leu Gln Leu 
                85                  90                  95      


Ser Leu Ile Ser Pro Pro Pro Gly Leu Lys Ile Ser Asp Ser Leu Leu 
            100                 105                 110         


Leu Leu Pro Pro Ser Leu Val Asn Ser Ser Pro Val Ile Phe Asp Glu 
        115                 120                 125             


His Leu Ile Cys Pro Leu Met Gly Gly Ala Tyr Ile Ala Phe Pro Thr 
    130                 135                 140                 


Phe Cys His Met Phe Ile Ile Cys Phe Ile Leu His Gly Arg Val Ile 
145                 150                 155                 160 


Val Ser Leu Pro Ser Val Leu Phe Asp Pro Ser Val Leu Gln Val Leu 
                165                 170                 175     


Leu Asn Gln Val Leu Leu Asn Ser Cys Val Glu Leu Gln 
            180                 185                 


<210>  2
<211>  73
<212>  PRT
<213>  Human immunodeficiency virus

<400>  2

Pro Asp Asn Asn Cys Leu Ala Cys Thr Val Ser Val Ile Glu Ala Ala 
1               5                   10                  15      


Pro Ile Val Leu Pro Ala Ala Pro Lys Asn Pro Arg Asn Lys Ala Pro 
            20                  25                  30          


Ile Pro Thr Ala Leu Phe Ser Leu Cys Thr Thr Leu Leu Phe Ala Leu 
        35                  40                  45              


Val Gly Ala Thr Pro Asn Gly Ser Ile Phe Thr Thr Leu Tyr Leu Tyr 
    50                  55                  60                  


Asn Ser Leu Leu Gln Leu Ser Leu Ile 
65                  70              


<210>  3
<211>  189
<212>  PRT
<213>  Human immunodeficiency virus

<400>  3

Met Pro Gln Thr Val Ser Cys Asn Arg Cys Cys Cys Ala Ser Ile Ala 
1               5                   10                  15      


Leu Ser Lys Leu Phe Cys Cys Cys Thr Ile Pro Asp Asn Asn Cys Leu 
            20                  25                  30          


Ala Cys Thr Val Ser Val Ile Asp Arg Ala Pro Ile Val Leu Pro Ala 
        35                  40                  45              


Ala Pro Lys Asn Pro Arg Asn Lys Ala Pro Ile Pro Thr Ala Leu Phe 
    50                  55                  60                  


Ser Leu Cys Thr Thr Leu Leu Phe Ala Leu Val Gly Ala Thr Pro Asn 
65                  70                  75                  80  


Gly Ser Ile Phe Thr Thr Leu Tyr Leu Tyr Asn Ser Leu Leu Gln Leu 
                85                  90                  95      


Ser Leu Ile Ser Pro Pro Pro Gly Leu Lys Ile Ser Asp Pro Leu Leu 
            100                 105                 110         


Leu Leu Pro Pro Ser Leu Val Asn Ser Ser Pro Val Ile Phe Asp Glu 
        115                 120                 125             


His Leu Ile Cys Pro Leu Met Gly Gly Ala Tyr Ile Ala Phe Pro Thr 
    130                 135                 140                 


Ser Cys His Met Phe Ile Asn Cys Phe Ile Leu His Gly Ser Val Ile 
145                 150                 155                 160 


Val Ser Leu Pro Ser Val Leu Phe Asp Pro Ser Val Leu Gln Val Leu 
                165                 170                 175     


Leu Asn Gln Val Leu Leu Asn Ser Cys Val Glu Leu Gln 
            180                 185                 


<210>  4
<211>  189
<212>  PRT
<213>  Human immunodeficiency virus

<400>  4

Met Pro Gln Thr Val Ser Cys Asn Arg Cys Cys Cys Ala Ser Ile Ala 
1               5                   10                  15      


Leu Ser Lys Leu Phe Cys Cys Cys Thr Ile Ser Asp Asn Asn Cys Leu 
            20                  25                  30          


Ala Cys Thr Val Ser Val Ile Asp Ala Ala Pro Ile Val Leu Pro Ala 
        35                  40                  45              


Ala Pro Lys Asn Pro Arg Asn Lys Ala Pro Ile Pro Thr Ala Leu Phe 
    50                  55                  60                  


Ser Leu Cys Thr Thr Leu Leu Phe Ala Leu Val Gly Ala Thr Pro Asn 
65                  70                  75                  80  


Gly Ser Ile Phe Thr Thr Leu Tyr Leu Tyr Asn Ser Leu Leu Gln Leu 
                85                  90                  95      


Ser Leu Ile Ser Pro Pro Pro Gly Leu Lys Ile Ser Asp Pro Leu Leu 
            100                 105                 110         


Leu Leu Pro Pro Ser Leu Val Asn Ser Ser Pro Val Ile Phe Asp Glu 
        115                 120                 125             


His Leu Ile Cys Pro Leu Met Gly Gly Ala Tyr Ile Ala Phe Pro Thr 
    130                 135                 140                 


Ser Cys His Met Phe Ile Asn Cys Phe Ile Leu His Gly Ser Val Ile 
145                 150                 155                 160 


Val Ser Leu Pro Ser Val Leu Phe Asp Pro Ser Val Leu Gln Val Leu 
                165                 170                 175     


Leu Asn Gln Val Leu Leu Asn Ser Cys Val Glu Leu Gln 
            180                 185                 


<210>  5
<211>  185
<212>  PRT
<213>  Human immunodeficiency virus


<220>
<221>  misc_feature
<222>  (63)..(63)
<223>  Xaa can be any naturally occurring amino acid

<220>
<221>  misc_feature
<222>  (68)..(68)
<223>  Xaa can be any naturally occurring amino acid

<220>
<221>  misc_feature
<222>  (73)..(73)
<223>  Xaa can be any naturally occurring amino acid

<220>
<221>  misc_feature
<222>  (93)..(93)
<223>  Xaa can be any naturally occurring amino acid

<400>  5

Met Pro Gln Ala Val Ser Cys Asn Ile Cys Cys Cys Ala Ser Ile Ala 
1               5                   10                  15      


Leu Ser Lys Leu Phe Cys Cys Cys Thr Ile Pro Asp Asn Asn Cys Leu 
            20                  25                  30          


Ala Cys Thr Val Ser Val Ile Asp Ala Ala Pro Ile Val Leu Pro Ala 
        35                  40                  45              


Ala Pro Lys Asn Pro Arg Asn Ile Thr Pro Ile Thr Pro Thr Xaa Leu 
    50                  55                  60                  


Phe Ser Leu Xaa Thr Thr Leu Leu Xaa Ala Leu Val Gly Ala Thr Pro 
65                  70                  75                  80  


Asn Gly Ser Ile Phe Thr Thr Leu Tyr Leu Tyr Asn Xaa Leu Leu Gln 
                85                  90                  95      


Leu Ser Leu Ile Ser Pro Pro Pro Gly Leu Lys Ile Ser Val Val Ser 
            100                 105                 110         


Leu Leu Phe Pro Pro Ser Leu Val Asn Ser Ser Pro Val Ile Phe Asp 
        115                 120                 125             


Glu His Leu Ile Cys Pro Ser Met Gly Gly Ala Tyr Ile Ala Phe Pro 
    130                 135                 140                 


Thr Ser Cys His Met Phe Ile Ile Cys Phe Ile Leu His Gly Ser Leu 
145                 150                 155                 160 


Ile Ile Leu Ser Asp Gln Val Leu Phe Pro Ser Val Leu Phe Gln Val 
                165                 170                 175     


Leu Leu Asn Ser Cys Val Glu Leu Gln 
            180                 185 


<210>  6
<211>  50
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo reverse transcroption ASP

<400>  6
atcatgaagc atctagattc aaagtgctgc ggagcagcag gaagcactat                  50


<210>  7
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo reverse transcription GAG

<400>  7
tcatccatcc tatttgttcc tgaag                                             25


<210>  8
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo reverse transcription beta Actin

<400>  8
aagggacttc ctgtaacaat gca                                               23


<210>  9
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo reverse transcription RPL19

<400>  9
tgcgtgcttc cttggtctta                                                   20


<210>  10
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo reverse transcroption HPRT

<400>  10
ggcgatgtca ataggactcc                                                   20


<210>  11
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo fw ASP

<400>  11
atgccccaga ctgtgagttg                                                   20


<210>  12
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo rev ASP

<400>  12
atcatgaagc atctagattc aaagtgctgc                                        30


<210>  13
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo fw GAG

<400>  13
gtggggggac atcaagcag                                                    19


<210>  14
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo rev GAG

<400>  14
tgctatgtca cttccccttg g                                                 21


<210>  15
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo fw actin

<400>  15
ccaaccgcga gaagatga                                                     18


<210>  16
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo rev Actin

<400>  16
ccagaggcgt acagggatag                                                   20


<210>  17
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo fw RPL19

<400>  17
ctctagtgtc ctccgctgtg                                                   20


<210>  18
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo rev RPL19

<400>  18
cttccgctta cctatgccca                                                   20


<210>  19
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo fw HPRT

<400>  19
tgacactggc aaaacaatgc a                                                 21


<210>  20
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  oligo rev HPRT

<400>  20
ggtccttttc accagcaagc t                                                 21


<210>  21
<211>  8
<212>  PRT
<213>  Artificial Sequence

<220>
<223>  Flag tag

<400>  21

Asp Tyr Lys Asp Asp Asp Asp Lys 
1               5               


<210>  22
<211>  570
<212>  DNA
<213>  Human immunodeficiency virus

<400>  22
atgccccaga ctgtgagttg caacagatgc tgttgcgcct caatagccct cagcaaattg       60

ttctgctgct gcactatacc agacaataat tgtctggcct gtaccgtcag cgtcattgag      120

gctgcgccca tagtgcttcc tgctgctccc aagaacccaa ggaacaaagc tcctattccc      180

actgctcttt tttctctctg caccactctt ctctttgcct tggtgggtgc tactcctaat      240

ggttcaattt ttactacttt atatttatat aattcacttc tccaattgtc cctcatatct      300

cctcctccag gtctgaagat ctcggactca ttgttgctat taccaccatc tcttgttaat      360

agcagccctg taatatttga tgaacatcta atttgtccac tgatgggagg ggcatacatt      420

gcttttccta ctttctgcca catgtttata atttgtttta ttctgcatgg gagggtgatt      480

gtgtcacttc cttcagtgtt atttgaccct tcagtactcc aagtactatt aaaccaagta      540

ctattaaaca gttgtgttga attacagtag                                       570


