                         SEQUENCE LISTING

<110>  Biotechnologicky ustav AV CR, v. v. i.
       Univerzita Palackeho v Olomouci
 
<120>  Polypeptides mimicking epitope of broadly neutralizing antibody 
       VRC01 as antigens for a vaccine preventing HIV-1 infection

<130>  P

<160>  11    

<170>  PatentIn version 3.5

<210>  1
<211>  27
<212>  PRT
<213>  artificial

<220>
<223>  Proteins derived from combinatorial library


<220>
<221>  MISC_FEATURE
<222>  (1)..(1)
<223>  Xaa is A, N or R

<220>
<221>  MISC_FEATURE
<222>  (5)..(5)
<223>  Xaa is A, R, D

<220>
<221>  MISC_FEATURE
<222>  (8)..(8)
<223>  Xaa is R, V or P

<220>
<221>  MISC_FEATURE
<222>  (10)..(10)
<223>  Xaa is V, L or S

<220>
<221>  MISC_FEATURE
<222>  (11)..(11)
<223>  Xaa is T, G or R

<220>
<221>  MISC_FEATURE
<222>  (13)..(13)
<223>  Xaa is G or T

<220>
<221>  MISC_FEATURE
<222>  (14)..(14)
<223>  Xaa is L or A

<220>
<221>  MISC_FEATURE
<222>  (18)..(18)
<223>  Xaa is V or I

<220>
<221>  MISC_FEATURE
<222>  (21)..(21)
<223>  Xaa is G, A or R

<220>
<221>  MISC_FEATURE
<222>  (25)..(25)
<223>  Xaa is G, A or R

<400>  1

Xaa Tyr Lys Asn Xaa Ile Asn Xaa Ala Xaa Xaa Val Xaa Xaa Val Lys 
1               5                   10                  15      


Arg Xaa Ile Asp Xaa Ile Leu Ala Xaa Leu Pro 
            20                  25          


<210>  2
<211>  19
<212>  PRT
<213>  artificial

<220>
<223>  alpha-helical sequence

<400>  2

Leu Ala Glu Ala Lys Val Leu Ala Asn Arg Glu Leu Asp Lys Tyr Gly 
1               5                   10                  15      


Val Ser Asp 
            


<210>  3
<211>  27
<212>  PRT
<213>  artificial

<220>
<223>  specific binding peptide

<400>  3

Ala Tyr Lys Asn Ala Ile Asn Arg Ala Val Thr Val Gly Leu Val Lys 
1               5                   10                  15      


Arg Val Ile Asp Gly Ile Leu Ala Arg Leu Pro 
            20                  25          


<210>  4
<211>  27
<212>  PRT
<213>  artificial

<220>
<223>  specific binding peptide

<400>  4

Asn Tyr Lys Asn Arg Ile Asn Val Ala Leu Gly Gly Thr Ala Val Lys 
1               5                   10                  15      


Arg Ile Ile Asp Ala Ile Leu Ala Ala Leu Pro 
            20                  25          


<210>  5
<211>  27
<212>  PRT
<213>  artificial

<220>
<223>  specific binding peptide

<400>  5

Arg Tyr Lys Asn Asp Ile Asn Pro Ala Ser Arg Val Gly Ala Val Lys 
1               5                   10                  15      


Arg Val Ile Asp Arg Ile Leu Ala Gly Leu Pro 
            20                  25          


<210>  6
<211>  46
<212>  PRT
<213>  artificial

<220>
<223>  specific binding peptide

<400>  6

Leu Ala Glu Ala Lys Val Leu Ala Asn Arg Glu Leu Asp Lys Tyr Gly 
1               5                   10                  15      


Val Ser Asp Ala Tyr Lys Asn Ala Ile Asn Arg Ala Val Thr Val Gly 
            20                  25                  30          


Leu Val Lys Arg Val Ile Asp Gly Ile Leu Ala Arg Leu Pro 
        35                  40                  45      


<210>  7
<211>  46
<212>  PRT
<213>  artificial

<220>
<223>  specific binding peptide

<400>  7

Leu Ala Glu Ala Lys Val Leu Ala Asn Arg Glu Leu Asp Lys Tyr Gly 
1               5                   10                  15      


Val Ser Asp Asn Tyr Lys Asn Arg Ile Asn Val Ala Leu Gly Gly Thr 
            20                  25                  30          


Ala Val Lys Arg Ile Ile Asp Ala Ile Leu Ala Ala Leu Pro 
        35                  40                  45      


<210>  8
<211>  46
<212>  PRT
<213>  artificial

<220>
<223>  specific binding peptide

<400>  8

Leu Ala Glu Ala Lys Val Leu Ala Asn Arg Glu Leu Asp Lys Tyr Gly 
1               5                   10                  15      


Val Ser Asp Arg Tyr Lys Asn Asp Ile Asn Pro Ala Ser Arg Val Gly 
            20                  25                  30          


Ala Val Lys Arg Val Ile Asp Arg Ile Leu Ala Gly Leu Pro 
        35                  40                  45      


<210>  9
<211>  39
<212>  DNA
<213>  artificial

<220>
<223>  primer

<400>  9
attaggatcc ccgtcagggg ccgatatcaa taactatgc                              39


<210>  10
<211>  81
<212>  DNA
<213>  artificial

<220>
<223>  primer

<400>  10
tttccgctcg agctattcgt gccattcgat tttctgagcc tcgaagatgt cgttcaggcc       60

cggtttgaag tccaatggcg c                                                 81


<210>  11
<211>  27
<212>  PRT
<213>  artificial

<220>
<223>  part of ABD wild type sequence

<400>  11

Tyr Tyr Lys Asn Leu Ile Asn Asn Ala Lys Thr Val Glu Gly Val Lys 
1               5                   10                  15      


Ala Leu Ile Asp Glu Ile Leu Ala Ala Leu Pro 
            20                  25          


