                               SEQUENCE LISTING

<110> THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
 
<120> STRUCTURE-BASED DESIGN OF THERAPEUTICS TARGETING RNA HAIRPIN 
      LOOPS

<130> 304350370WOU1

<140> PCT/US2020/061299
<141> 2020-11-19

<150> 62/937,657
<151> 2019-11-19

<160> 49    

<170> PatentIn version 3.5

<210> 1
<211> 122
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 1
gguugccgaa uccgaaaggu acggaggaac cgcuuuuugg gguuaaucug cagugaagcu       60

gcaguaggga uaccuucugu cccgcacccg acagcuaacu ccggaggcaa uaaaggaagg      120

ag                                                                     122


<210> 2
<211> 19
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 2
cgtggatccg gtcccattc                                                    19


<210> 3
<211> 54
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 3
ctataggttg ccgaatccgt ggtgtggagt ctggtacgga ggaaccgctt tttg             54


<210> 4
<211> 56
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 4
ctataggttg ccgaatccag tggtgtggag tcttggtacg gaggaaccgc tttttg           56


<210> 5
<211> 58
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 5
ctataggttg ccgaatccga gtggtgtgga gtcttcggta cggaggaacc gctttttg         58


<210> 6
<211> 60
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 6
ctataggttg ccgaatccag agtggtgtgg agtcttctgg tacggaggaa ccgctttttg       60


<210> 7
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 7
gcagaattct aatacgactc actataggtt gccgaatcc                              39


<210> 8
<211> 20
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide

<400> 8
cuccttcctt tattgcctcc                                                   20


<210> 9
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 9
ggtacggagg aaccgctttt tg                                                22


<210> 10
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 10
ctataggttg ccgaatccat atgtggtacg gaggaaccgc tttttg                      46


<210> 11
<211> 48
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 11
ctataggttg ccgaatccga tctggcggta cggaggaacc gctttttg                    48


<210> 12
<211> 47
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 12
ctataggttg ccgaatccga tgctcggtac ggaggaaccg ctttttg                     47


<210> 13
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 13
ctataggttg ccgaatccct ttacttgggt acggaggaac cgctttttg                   49


<210> 14
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 14
ctataggttg ccgaatccaa agttggtacg gaggaaccgc tttttg                      46


<210> 15
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 15
ctataggttg ccgaatccat gtcgtttggt acggaggaac cgctttttg                   49


<210> 16
<211> 50
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 16
ctataggttg ccgaatccac ctagaaatgg tacggaggaa ccgctttttg                  50


<210> 17
<211> 47
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 17
ctataggttg ccgaatccat gatttggtac ggaggaaccg ctttttg                     47


<210> 18
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 18
gcagaattct aatacgactc actataggtt gccgaatcc                              39


<210> 19
<211> 33
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 19
ggaacacata tgttcctata gtgagtcgta tta                                    33


<210> 20
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 20
ggaacgccag atcgttccta tagtgagtcg tatta                                  35


<210> 21
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 21
ggaacgagca tcgttcctat agtgagtcgt atta                                   34


<210> 22
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 22
ggaaccaagt aaaggttcct atagtgagtc gtatta                                 36


<210> 23
<211> 33
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 23
ggaacaactt tgttcctata gtgagtcgta tta                                    33


<210> 24
<211> 36
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 24
ggaacaaacg acatgttcct atagtgagtc gtatta                                 36


<210> 25
<211> 37
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 25
ggaacatttc taggtgttcc tatagtgagt cgtatta                                37


<210> 26
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 26
ggaacaaatc atgttcctat agtgagtcgt atta                                   34


<210> 27
<211> 13
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 27
ggttgccgaa tcc                                                          13


<210> 28
<211> 105
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 28
ggtacggagg aaccgctttt tggggttaat ctgcagtgaa gctgcagtag ggataccttc       60

tgtcccgcac ccgacagcta actccggagg caataaagga aggag                      105


<210> 29
<211> 151
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide


<220>
<221> modified_base
<222> (14)..(46)
<223> a, c, u, or g

<220>
<221> misc_feature
<222> (14)..(46)
<223> This region may encompass 4-33 nucleotides

<400> 29
gguugccgaa uccnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggua cggaggaacc       60

gcuuuuuggg guuaaucugc agugaagcug caguagggau accuucuguc ccgcacccga      120

cagcuaacuc cggaggcaau aaaggaagga g                                     151


<210> 30
<211> 118
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      polynucleotide

<400> 30
gguugccgaa uccgguacgg aggaaccgcu uuuugggguu aaucugcagu gaagcugcag       60

uagggauacc uucugucccg cacccgacag cuaacuccgg aggcaauaaa ggaaggag        118


<210> 31
<211> 20
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 31
ggaacaccua gaaauguucc                                                   20


<210> 32
<211> 19
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 32
ggaacuuugc uguaguucc                                                    19


<210> 33
<211> 19
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 33
ggaaccuuua cuugguucc                                                    19


<210> 34
<211> 18
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 34
ggaacgaucu ggcguucc                                                     18


<210> 35
<211> 18
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 35
ggaacgaucu ggcguucc                                                     18


<210> 36
<211> 16
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 36
ggaacaugau uguucc                                                       16


<210> 37
<211> 16
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 37
ggaacuugaa aguucc                                                       16


<210> 38
<211> 16
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 38
ggaacauaug uguucc                                                       16


<210> 39
<211> 55
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 39
ggugacucca gguccugugu guuaccuaga aauaagcacu ggacuuggag ucacc            55


<210> 40
<211> 40
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 40
ggagacugau ugucauaugu cguuuguggg auccgucucc                             40


<210> 41
<211> 39
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 41
gguucacgca uuugcuuuac uugcaaugau uauacaacc                              39


<210> 42
<211> 52
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 42
gguaugcaua uacuucuuug aggaucuggc cuaaagaggu auagggcaug cc               52


<210> 43
<211> 39
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 43
ggcccggguu auaccugaug cucacguaua agacgagcc                              39


<210> 44
<211> 54
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 44
ggcaguguau ugcuagcggc uguuaaugau uuuaacaguu gcuaguugca cucc             54


<210> 45
<211> 47
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 45
ggucucuucc cagauuuccc aaaguuggga aaagcugggu ugagacc                     47


<210> 46
<211> 45
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 46
gguuugcauu ucagcguaua uauguauaug uggcugugca aaucc                       45


<210> 47
<211> 58
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence


<220>
<221> modified_base
<222> (1)..(1)
<223> a, c, u, g, unknown or other

<220>
<221> modified_base
<222> (28)..(28)
<223> a, c, u, g, unknown or other

<220>
<221> modified_base
<222> (31)..(33)
<223> a, c, u, g, unknown or other

<400> 47
nguguauuug acaarcugac acucyrunur nnngaguguc aguuugucaa auacccca         58


<210> 48
<211> 52
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 48
kduygccccc agcccgurcu cuguvcgaca cuauwuagag agggggcgrc mk               52


<210> 49
<211> 54
<212> RNA
<213> Unknown

<220>
<223> Description of Unknown: 
      Naturally occurring ribonucleic acid sequence

<400> 49
auugccagga cgaccggguc cuuucuugga uuaacccgcu caaugccugg agau             54


