                         SEQUENCE LISTING

<110>  F. Hoffmann-La Roche AG
       Roche Diagnostics GmbH
       Roche Molecular Systems, Inc.
 
<120>  QUANTITATIVE PCR SCREENING OF INDUCIBLE PROPHAGE FROM BACTERIAL 
       ISOLATES

<130>  P35268-WO-HS

<150>  62/955746
<151>  2019-12-31

<160>  99    

<170>  PatentIn version 3.5

<210>  1
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 01 primer1

<400>  1
gggctatcac atatcacgtt tgtac                                             25


<210>  2
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 02 primer1

<400>  2
tgcaaggtgg tggtgacc                                                     18


<210>  3
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 03 primer1

<400>  3
atgaagcctg agcatctcaa                                                   20


<210>  4
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 04 primer1

<400>  4
actccgtccc gtggga                                                       16


<210>  5
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 05 primer1

<400>  5
gacaatttgt cggtcgatgg aaa                                               23


<210>  6
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 06 primer1

<400>  6
gcctgaatat gtcatccacc aac                                               23


<210>  7
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 07 primer1

<400>  7
cgccgggatc cgga                                                         14


<210>  8
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 08 primer1

<400>  8
ggcgaaattc cggcctgtaa                                                   20


<210>  9
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 09 primer1

<400>  9
tgctggtgga gttctggac                                                    19


<210>  10
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 10 primer1

<400>  10
ggcaacctat ccgaacgtca                                                   20


<210>  11
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 11 primer1

<400>  11
actacgatga tttgcgtggg tc                                                22


<210>  12
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 12 primer1

<400>  12
tggtatctgg cgatatcgtt gc                                                22


<210>  13
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 01 primer2

<400>  13
acaaaacgca tatggtcaaa gttcttaaa                                         29


<210>  14
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 02 primer2

<400>  14
ggatcgttgc tgtacatcgc                                                   20


<210>  15
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 03 primer2

<400>  15
tgtcggtgat ccagtaaaga ttgttc                                            26


<210>  16
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 04 primer2

<400>  16
tgtagacaat ccagccatca atca                                              24


<210>  17
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 05 primer2

<400>  17
cgcgattatt tttcgccacg c                                                 21


<210>  18
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 06 primer2

<400>  18
gacaccgtcg atttgaatct cttc                                              24


<210>  19
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 07 primer2

<400>  19
cgaaattaag gactttgtgg gcatcaa                                           27


<210>  20
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 08 primer2

<400>  20
ggagaacgca ataaaccgct c                                                 21


<210>  21
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 09 primer2

<400>  21
gcaacaaagc catatttcac cgc                                               23


<210>  22
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 10 primer2

<400>  22
atgtcgctga caggcaagta                                                   20


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 11 primer2

<400>  23
accgacaagt cgacagcatc                                                   20


<210>  24
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Klebsiella pneumoniae Clade 12 primer2

<400>  24
cgcggccttc atcaaaataa aca                                               23


<210>  25
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 02 primer1

<400>  25
cgggaagata tgcgccaagt a                                                 21


<210>  26
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 03 primer1

<400>  26
ggaagagcag ctcgtcga                                                     18


<210>  27
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 04 primer1

<400>  27
gggatcagcc cgacactta                                                    19


<210>  28
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 05 primer2

<400>  28
tgcaggaggt gaaacaggc                                                    19


<210>  29
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 06 primer1

<400>  29
tgcgcagtta gccaggttc                                                    19


<210>  30
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 07 primer1

<400>  30
cctgccctga ctgggc                                                       16


<210>  31
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 08 primer1

<400>  31
gatggcatgg tcgcaatgac                                                   20


<210>  32
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 09 primer1

<400>  32
acagtcacga caatgacgac a                                                 21


<210>  33
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 10 primer1

<400>  33
ggcgattttg ttcgccatca c                                                 21


<210>  34
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 11 primer1

<400>  34
ttgcagaagg catccgcta                                                    19


<210>  35
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 02 primer2

<400>  35
tggcagtaat cgaagaagta accc                                              24


<210>  36
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 03 primer2

<400>  36
gccagctctg tgccctc                                                      17


<210>  37
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 04 primer2

<400>  37
cgccacaacc cacccac                                                      17


<210>  38
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 05 primer2

<400>  38
cgaggttatg ccgcagacc                                                    19


<210>  39
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 06 primer2

<400>  39
ccgtcgttga acaggcga                                                     18


<210>  40
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 07 primer2

<400>  40
atcaacgatt ttcagttgcc tgaa                                              24


<210>  41
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 08 primer2

<400>  41
cagcggtcgg aaaatgaagt c                                                 21


<210>  42
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 09 primer2

<400>  42
tgagttggct cgggtcgata                                                   20


<210>  43
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 10 primer2

<400>  43
acctcgcttt cgtcgtcc                                                     18


<210>  44
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Enterobacter cloacae Clade 11 primer2

<400>  44
cactgaagaa aataccgcgc tc                                                22


<210>  45
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M01 primer1

<400>  45
cgggagtacc gtaaagccc                                                    19


<210>  46
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M02 primer1

<400>  46
ccgatttatc cggaccaggc                                                   20


<210>  47
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M03 primer1

<400>  47
accaggccgc acatgc                                                       16


<210>  48
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M04 primer1

<400>  48
ggagccgttc ccgcaa                                                       16


<210>  49
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M05 primer1

<400>  49
ctgtattgtt ttgcctgtga taacga                                            26


<210>  50
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M06 primer1

<400>  50
cgcgccgggc ttga                                                         14


<210>  51
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M07 primer1

<400>  51
ccggtccgtg ggagtca                                                      17


<210>  52
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M08 primer1

<400>  52
tcaggaaacc gcaaaggca                                                    19


<210>  53
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M09 primer1

<400>  53
cgcgtcagcc cggaa                                                        15


<210>  54
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M10 primer1

<400>  54
gccagcatgg agcaacga                                                     18


<210>  55
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M11 primer1

<400>  55
tgcttgatgg tcgcttcaaa gta                                               23


<210>  56
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M12 primer1

<400>  56
gctgttccgg gtgatccc                                                     18


<210>  57
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M13 primer1

<400>  57
cgcagattca gcgcaaattc aa                                                22


<210>  58
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M14 primer1

<400>  58
gcaggaaaaa aatactgtgg gaca                                              24


<210>  59
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M15 primer1

<400>  59
ctggacggcg tacagtcc                                                     18


<210>  60
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M16 primer1

<400>  60
agacagaggc gcagcaac                                                     18


<210>  61
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M17 primer1

<400>  61
actaccgtga aaaatccgtg ga                                                22


<210>  62
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M18 primer1

<400>  62
gctgcgcatc agtatttccc                                                   20


<210>  63
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M01 primer2

<400>  63
ccctgctgct cccagaaatc                                                   20


<210>  64
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M02 primer2

<400>  64
ccgccaccag gtcaaaca                                                     18


<210>  65
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M03 primer2

<400>  65
ccaccaggtc aaacaccca                                                    19


<210>  66
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M04 primer2

<400>  66
tcgcgtcact ctgcatcac                                                    19


<210>  67
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M05 primer2

<400>  67
acctcaatcc cgaacgcttc                                                   20


<210>  68
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M06 primer2

<400>  68
gcgcctcgcg ggaaaaataa                                                   20


<210>  69
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M07 primer2

<400>  69
tgccgtacac aatccagcc                                                    19


<210>  70
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M08 primer2

<400>  70
gccaccagcg gatccca                                                      17


<210>  71
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M09 primer2

<400>  71
ggccagccga ttttcaggta                                                   20


<210>  72
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M10 primer2

<400>  72
cctgaaccac aaaacggcga                                                   20


<210>  73
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M11 primer2

<400>  73
cgcatcatgt atgcatagcg aa                                                22


<210>  74
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M12 primer2

<400>  74
ccgtaccgat ttcggtaagg taaac                                             25


<210>  75
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M13 primer2

<400>  75
cgcatcagcc aggttaggag a                                                 21


<210>  76
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M14 primer2

<400>  76
ctgccagcgg gaaatactga                                                   20


<210>  77
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M15 primer2

<400>  77
cccagcgtgg tgttcacaa                                                    19


<210>  78
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M16 primer2

<400>  78
gcacggacac acgtaatgcc                                                   20


<210>  79
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M17 primer2

<400>  79
ccatacagag ccctcaatac gtttatc                                           27


<210>  80
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Escherichia coli Clade M18 primer2

<400>  80
cattcatcct ctccggataa ggc                                               23


<210>  81
<211>  8439
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  pZX023 Kpn packaging cell line plasmid

<400>  81
gaagatcctt tgatcttttc tacggggtct gacgctcagt ggaacgaaaa ctcacgttaa       60

gggattttgg tcatgagatt atcctcgtca ggtggcactt ttcggggaaa tgtgcgcgga      120

acccctattt gtttattttt ctaaatacat tcaaatatgt atccgctcat gagacaataa      180

ccctgataaa tgcttcaata atattgaaaa aggaagagtc gatcgatgaa gtttggaaat      240

atttgttttt cgtatcaacc accaggtgaa actcataagc aagtaatgga tcgctttgtt      300

cggcttggta tcgcctcaga agaggtaggg tttgatacat attggacctt agaacatcat      360

tttacagagt ttggtcttac gggaaattta tttgttgctg cggctaacct gttaggaaga      420

actaaaacat taaatgttgg cactatgggg gttgttattc cgacagcaca cccagttcga      480

cagttagaag acgttttatt attagatcaa atgtcgaaag gtcgttttaa ttttggaacc      540

gttcgagggc tataccataa agattttcga gtatttggtg ttgatatgga agagtctcga      600

gcaattactc aaaatttcta ccagatgata atggaaagct tacagacagg aaccattagc      660

tctgatagtg attacattca atttcctaag gttgatgtat atcccaaagt gtactcaaaa      720

aatgtaccaa cccgtatgac tgctgagtcc gcaagtacga cagaatggct agcaatacaa      780

gggctaccaa tggttcttag ttggattatt ggtactaatg aaaaaaaagc acagatggaa      840

ctctataatg aaattgcgac agaatatggt catgatatat ctaaaataga tcattgtatg      900

acttatattt gttctgttga tgatgatgca caaaaggcgc aagatgtttg tcgggagttt      960

ctgaaaaatt ggtatgactc atatgtaaat gcgaccaata tctttaatga tagcgatcaa     1020

actcgtggtt atgattatca taaaggtcaa tggcgtgatt ttgttttaca aggacataca     1080

aacaccaatc gacgtgttga ttatagcaat ggtattaacc ccgtaggcac tcctgagcag     1140

tgtattgaaa tcattcaacg tgatattgat gcaacgggta ttacaaacat tacatgcgga     1200

tttgaagcta atggaactga agatgaaata attgcttcca tgcgacgctt tatgacacaa     1260

gtcgctcctt tcttaaaaga acctaaataa attacttatt tgatactaga gataataagg     1320

aacaagttat gaaatttgga ttattttttc taaactttca gaaagatgga ataacatctg     1380

aagaaacgtt ggataatatg gtaaagactg tcacgttaat tgattcaact aaatatcatt     1440

ttaatactgc ctttgttaat gaacatcact tttcaaaaaa tggtattgtt ggagcaccta     1500

ttaccgcagc tggtttttta ttagggttaa caaataaatt acatattggt tcattaaatc     1560

aagtaattac cacccatcac cctgtacgtg tagcagaaga agccagttta ttagatcaaa     1620

tgtcagaggg acgcttcatt cttggtttta gtgactgcga aagtgatttc gaaatggaat     1680

tttttagacg tcatatctca tcaaggcaac aacaatttga agcatgctat gaaataatta     1740

atgacgcatt aactacaggt tattgccatc cccaaaacga cttttatgat tttccaaagg     1800

tttcaattaa tccacactgt tacagtgaga atggacctaa gcaatatgta tccgctacat     1860

caaaagaagt cgtcatgtgg gcagcgaaaa aggcactgcc tttaacgttt aagtgggagg     1920

ataatttaga aaccaaagaa cgctatgcaa ttctatataa taaaacagca caacaatatg     1980

gtattgatat ttcggatgtt gatcatcaat taactgtaat tgcgaactta aatgctgata     2040

gaagtacggc tcaagaagaa gtgagagaat acttaaaaga ctatatcact gaaacttacc     2100

ctcaaatgga cagagatgaa aaaattaact gcattattga agagaatgca gttgggtctc     2160

atgatgacta ttatgaatcg acaaaattag cagtggaaaa aacagggtct aaaaatattt     2220

tattatcctt tgaatcaatg tccgatatta aagatgtaaa agatattatt gatatgttga     2280

accaaaaaat cgaaatgaat ttaccataag gatcctaaaa ttaaaggcaa tttctatatt     2340

agattgcctt tttggcgcgc ctattctaat gcataataaa tactgataac atcttatatt     2400

ttgtattata ttttgtatta tcgttgacat gtataatttt gatatcaaaa actgattttc     2460

cctctattat tttcgagatt tattttctta attctcttta acaaactaga aatattgtat     2520

atacaaaaaa ttataaataa tagatgaata gtttaattat aggtgttcat caatcgaaaa     2580

agcaacgtat cttatttaaa gtgcgttgct tttttctcat ttataaggtt aaataattct     2640

catatatcaa gcaaagtgac agagctcggt actctcggct tgaacgaatt ggcggccgcc     2700

ctgcaggata gctgacgacc ttaaggataa atttctggta aggaggacac gtatggaagt     2760

gggcaagttg gggaagccgt atccgttgct gaatctggca tatgtgggag tataagacgc     2820

gcagcgtcgc atcaggcatt tttttctgcg ccaatgccgg tagatagcaa tccggcccga     2880

ggggcacaaa aaacccctca agacccgttt agaggcccca aggggttatg ctacgatact     2940

caggcgccgg gggcggtgtc cggcggcccc cagaggaact gcgccagttc ctccggatcg     3000

gtgaagccgg agagatccag cggggtctcc tcgaacacct cgaagtcgtg caggaaggtg     3060

aaggcgagca gttcgcgggc gaagtcctcg gtccgcttcc actgcgcccc gtcgagcagc     3120

gcggccagga tctcgcggtc gccccggaag gcgttgagat gcagttgcac caggctgtag     3180

cgggggtctc ccgcatagac gtcggtgaag tcgacgatcc cggtgacctc ggtcgcggcc     3240

aggtccacga agatgttggt cccgtgcagg tcgccgtgga cgaaccgggg ttcgcggccg     3300

gccagcagcg tgtccacgtc cggcagccag tcctccaggc ggtccagcag ccggggcgag     3360

aggtagcccc acccgcggtg gtcctcgacg gtcgccgcgc ggcgttcccg cagcagttcc     3420

gggaagacct cggaatgggg ggtgagcacg gtgttcccgg tcagcggcac cctgtgcagc     3480

cggccgagca cccggccgag ttcgcgggcc agggcgagca gcgcgttccg gtcggtcgtg     3540

ccgtccatcg cggaccgcca ggtggtgccg gtcacccggc tcatcaccag gtagggccac     3600

ggccaggctc cggtgccggg ccgcagctcg ccgcggccga ggaggcgggg caccggcacc     3660

ggggcgtccg ccaggaccgc gtacgcctcc gactccgacg cgaggctctc cggaccgcac     3720

cagtgctcgc cgaacagctt gatcaccggg ccgggctcgc cgaccagtac ggggttggtg     3780

ctctcgccgg gcacccgcag caccggcggc accggcagcc cgagctcctc cagggctcgg     3840

cgggccagcg gctcccagaa ttcctggtcg ttccgcaggc tcgcgtagga atcatccgaa     3900

tcaatacggt cgagaagtaa cagggattct tgtgtcatat gaatcttact cctttgttaa     3960

attatttttg tttaagcatt ttgaatttgt atgcatctta gaacaatctc aaagttccaa     4020

gctcttgcaa gtctagatat tgagtcaaaa aaaattttca actcatactc ttcctttttc     4080

aatattattg aagcatttat cagggttatt gtctcatgag cgcacatttc cccgaaaagt     4140

gccacctgac gtctaagaaa ccattattat catgacatta acctataaaa ataggcgtat     4200

cacgaggccc tttcgtctcg cgcgtttcgg tgatgacggt gaaaacctct gacacatgca     4260

gctcccggag acggtcacag cttgtctgta agcggatgcc gggagcagac aagcccgtca     4320

gggcgcgtca gcgggtgttg gcgggtgtcg gggctggctt aactatgcgg catcagagca     4380

gattgtactg agagtgcacc atatgcggtg tgaaataccg cacagatgcg taaggagaaa     4440

ataccgcatc aggcgccatt cgccattcag gctgcgcaac tgttgggaag ggcgatcggt     4500

gcgggcctct tcgctattac gccagctggc gaaaggggga tgtgctgcaa ggcgattaag     4560

ttgggtaacg ccagggtttt cccagtcacg acgttgtaaa acgacggcca gtgaattcga     4620

gctcggtacc cggggatcct ctagagtcga cctgcaggca tgcaagcttg gcgtaatcat     4680

ggtcatagct gtttcctgtg tgaaattgtt atccgctcac aattccacac aacatacgag     4740

ccggaagcat aaagtgtaaa gcctggggtg cctaatgagt gagctcagca ggcattacaa     4800

caggcgctca cagagcgcct gtgataatgg ctgaatgctt caccagcgcg gcgttttatg     4860

ggaggtcatg atgagttaca ccagctgtac ttattgcggt tcacgtctcc atacgcgggc     4920

taactgcccg aaaacatggg gcggttcatc gcgtcgcgcc aatctgcgct gcagctattg     4980

tggccagtcc gggcataact cgaatgcctg cccacataat gcgagcagca gtcggcggcg     5040

cagcctgaat gacgacttcc acctcgactg aggcagccgc cgtcatgggg taggggggat     5100

caaatcccta acccctttcg cgcttcggga ctgccgcttc aggtagattt ttgcgcgtga     5160

gaaataaaaa cttttttttt ggctgttttg gggtgctttt gaatgagtac agggatgcga     5220

tcacctggtg gcggacgcaa atcgaataac actggaaatc aggttagttc tttaaccaga     5280

gcggtttctc cgccggatga attactgggc gatatggcta tcgatgcctg gaaacggacg     5340

tgcaaaattc ttattaaccg tggcacgttc gaaatggaag attgttattt gctgatggaa     5400

tactgcaaca ccgtgcagct gctgtacgac gccaaccagg aaattaaaag cgatggcctt     5460

ggtgatgata ccgctgccgg cggtcagaaa cttggtgcgg cagtgaaggc gcgtagccgt     5520

tatatcagcg aattaattcg actctccgtt gtgttaaagc tggaccccaa tagccgcatc     5580

ctgaagaaac agcccggaga taatgacaaa tccagcggtg agttcgacga gttttaattt     5640

tggtgcggcc ctaatgactt aaggatggag catggccgca tatccaaacg tcaatgtggc     5700

gaacaaatat gcgcgggata tcatagacgg gaaaatagtc gcctgcagag ctattcggct     5760

ggcatgtcag cgccattttg acgatttaaa aaaatcactc gataacaata acccttaccg     5820

gttcgacaga gatttagctg agcgggcctg ccggtttgtt cagaagttac cgcactccag     5880

tggcgatttg gcgggacaga aattaaaact ggaaccttgg caaagtttta ttttttgttc     5940

gatttttggc tgggtcacga aaaaggataa aaaacgccga tttcgcgaag cgtatatccg     6000

ggtagctagg aaaaacggga aatcgttttt tgctgccggg attggcacct acatgttttg     6060

cgctgatggc gaaaacagtg cagaagtgta ttgcggtgcg acaactatgg cgcaggcgaa     6120

aaaggtcttc accccagcca ggcagatggc cagccgcctg ccggcacttc gctccagatt     6180

tgatatttcg gtatggaccg acagcctgac acgcccggat ggttccgttt tcgcacctat     6240

ggcggggaaa cccggcgatg gtgacagccc acattgcgcg atcattgacg agtatcacga     6300

acacgatacg gatcatatgt acgaggccat gacaatgggg atgggcgccc gttcgcagcc     6360

gttaacgctc attatcacga cagccggctc gtcactggag tcaccttgct atgacaagga     6420

caaggaagtc aaagaggtta tcgaaggcat aacccgtaat gatcgcctgt ttggcatgat     6480

ttacgaactg gatgctggcg atgactggac cgacccgaaa aacttaatca aagctaaccc     6540

aaatctggac gtttcggtta agtacagcga cctggttgag cttctggaag tagcgaaaca     6600

ggttcctcgc aaggttaacg ccttcaaaac caaacgcctc aatatttggg tatccggtaa     6660

atccgcgttc tacaacatgg agcagtggaa ggctgctgaa gaccccgacc ttgagctggc     6720

tgattttgcg aatgacagct gcaacatcgg tctcgatctc gccaaaaagc tggatatgaa     6780

cgccgggata cggctattta cgcgggaaat tgaaggtaaa cggcattatt actgcatcaa     6840

acctaaattt tgggtcccgg aagacactat ccatacaacc gatccaaaac tgctgaaaac     6900

tgctgacagg tatcagaagt tttatgaaat gggcgtgctg gaagcgacgg atggcgcaga     6960

ggcagactat cgcgagattc tggccagtat tatcgatatg caggacgaaa accgcattga     7020

cgagattgat atcgaccctg ccggcgcaac agcacttcgc caccagttgg aggacaacgg     7080

atttaccgta gtcgatatcc ggcaggatta caccaatatg tcaccggcga tgaaagagct     7140

tgaagcggct ctggccggtg gtcgattcca ccatgatggc aatcccattc tgacctggtg     7200

tatcagcaac gttatcggga aatttatacc cggtagcgat gatctcgttc gcccgacaaa     7260

gggagacaat caaagcaaaa tcgatggagc tacagcgtta tttaacgcca tgactcgcgc     7320

aatgctgcac gaaagcagcg gcggcacatc ggtatatgat gaggaagaca tagcgtgtta     7380

atcacaattc tgagtttcat tattggcctg gccggggctg tactcatatc cgccggagcc     7440

tggttgattt tgcctgctgc cggtcttatt acgggcgggt caatatgtct tatctggtca     7500

tatctgactg cgcgggcggt ttcagccggt gccaaattta acgggggtga ataactcaca     7560

ttaattgcgt tgcgctcact gcccgctttc cagtcgggaa acctgtcgtg ccagctgcat     7620

taatgaatcg gccaacgcgc ggggagaggc ggtttgcgta ttgggcgctc ttccgcttcc     7680

tcgctcactg actcgctgcg ctcggtcgtt cggctgcggc gagcggtatc agctcactca     7740

aaggcggtaa tacggttatc cacagaatca ggggataacg caggaaagaa catgtgagca     7800

aaaggccagc aaaaggccag gaaccgtaaa aaggccgcgt tgctggcgtt tttccatagg     7860

ctccgccccc ctgacgagca tcacaaaaat cgacgctcaa gtcagaggtg gcgaaacccg     7920

acaggactat aaagatacca ggcgtttccc cctggaagct ccctcgtgcg ctctcctgtt     7980

ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc cttcgggaag cgtggcgctt     8040

tctcatagct cacgctgtag gtatctcagt tcggtgtagg tcgttcgctc caagctgggc     8100

tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct tatccggtaa ctatcgtctt     8160

gagtccaacc cggtaagaca cgacttatcg ccactggcag cagccactgg taacaggatt     8220

agcagagcga ggtatgtagg cggtgctaca gagttcttga agtggtggcc taactacggc     8280

tacactagaa gaacagtatt tggtatctgc gctctgctga agccagttac cttcggaaaa     8340

agagttggta gctcttgatc cggcaaacaa accaccgctg gtagcggtgg tttttttgtt     8400

tgcaagcagc agattacgcg cagaaaaaaa ggatctcaa                            8439


<210>  82
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae060_F10_terL forward primer

<400>  82
acgactgcca ttggatgtgt                                                   20


<210>  83
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae060_F10 terL reverse primer

<400>  83
tgctgtacac ccttgacgac                                                   20


<210>  84
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae065_F10 terL forward primer

<400>  84
tccaagctga cctatgcacg                                                   20


<210>  85
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae065_F10 terL reverse primer

<400>  85
gatccaccga gtagcccatg                                                   20


<210>  86
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae042_phi297 terL forward pirmer

<400>  86
gcgactgatc atcaacgtgc                                                   20


<210>  87
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae042_phi297 terL reverse primer

<400>  87
cctgatacgc cgaggacttc                                                   20


<210>  88
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae057_phi3 terL forward primer

<400>  88
atatcctgaa gtcgcgccag                                                   20


<210>  89
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Pae057_phi3 terL reverse primer

<400>  89
ttgccggaca gctcgatatc                                                   20


<210>  90
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Cfi16709_P1 TF forward primer

<400>  90
cggtgcgact gagatcactt                                                   20


<210>  91
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Cfi16709_P1 TF reverse primer

<400>  91
actgcgaatg tggatcagct                                                   20


<210>  92
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Cfi16710_phiKO2 TF forward primer

<400>  92
cggtatatga ccccacggtg                                                   20


<210>  93
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Cfi16710_phiKO2 TF reverse primer

<400>  93
ggttcacggc ccggatatag                                                   20


<210>  94
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Sms16017_SEN34 TF forward primer

<400>  94
cgacgagctg catgttgatg                                                   20


<210>  95
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Sms16017_SEN34 TF reverse primer

<400>  95
ggtcacatct cgaagcgtca                                                   20


<210>  96
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Sms16926_Psp3 TF forward primer

<400>  96
ccttgctggc aaagggtttc                                                   20


<210>  97
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Sms16926_Psp3 TF reverse primer

<400>  97
cagtacccag ctccaggttg                                                   20


<210>  98
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  luxA_qPCR forward primer

<400>  98
tgctgcggct aacctgttag                                                   20


<210>  99
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  luxA_qPCR reverse primer

<400>  99
tggtatagcc ctcgaacggt                                                   20


