                               SEQUENCE LISTING

<110> CEPHEID
 
<120> EXPONENTIAL BASE-3 AND GREATER NUCLEIC ACID AMPLIFICATION WITH 
      CYCLING PROBE

<130> CPHDP017WO

<140> PCT/US2021/029245
<141> 2021-04-26

<150> 63/016,194
<151> 2020-04-27

<160> 24    

<170> PatentIn version 3.5

<210> 1
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      primer


<220>
<221> modified_base
<222> (1)..(17)
<223> 2'-O-methyl nucleotide

<220>
<221> modified_base
<222> (45)..(45)
<223> dabcyl quencher-labeled uracil

<400> 1
ggcgcuccgg accggcgtag gctggtaacc aaccgctgaa ggcauacgg                   49


<210> 2
<211> 46
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      primer


<220>
<221> modified_base
<222> (1)..(17)
<223> 2'-O-methyl nucleotide

<220>
<221> modified_base
<222> (45)..(45)
<223> dabcyl quencher-labeled uracil

<400> 2
ggcgcuccgg accggcgtag gctggtaacc aaccgctgaa ggcaua                      46


<210> 3
<211> 31
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 3
tggttaccag cctacgccgg tccggagcgc c                                      31


<210> 4
<211> 38
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 4
ccgtatgcct tcagcggttg gttaccagcc tacgcatt                               38


<210> 5
<211> 35
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 5
tatgccttca gcggttggtt accagcctac gcatt                                  35


<210> 6
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 6
cgtaggctgg taacc                                                        15


<210> 7
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer

<400> 7
gcgtaggctg gtaacc                                                       16


<210> 8
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      primer


<220>
<221> modified_base
<222> (5)..(5)
<223> 2,6-diaminopurine 

<220>
<221> modified_base
<222> (13)..(13)
<223> 2,6-diaminopurine 

<400> 8
gcgtaggctg gtaacc                                                       16


<210> 9
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 9
ttcagaggat aaaggtaagc aa                                                22


<210> 10
<211> 22
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (2)..(2)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (10)..(10)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (16)..(16)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (22)..(22)
<223> 2,6-diaminopurine

<400> 10
ttcagaggat aaaggtaagc aa                                                22


<210> 11
<211> 62
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (1)..(19)
<223> 2'-O-methyl nucleotide

<220>
<221> modified_base
<222> (24)..(24)
<223> 5-methylcytosine

<220>
<221> modified_base
<222> (39)..(39)
<223> 5-methylcytosine

<400> 11
ccgcgggacc ggcgccagct gaccttaact tcgaatatca atactctgac caagtgactg       60

aa                                                                      62


<210> 12
<211> 41
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (8)..(8)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (14)..(14)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (15)..(15)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (20)..(20)
<223> 2-thiothymine

<400> 12
ttgatattcg aagttaaggt cagctggcgc cggtcccgcg g                           41


<210> 13
<211> 41
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (9)..(9)
<223> 5-methylcytosine

<220>
<221> modified_base
<222> (21)..(21)
<223> 5-methylcytosine

<400> 13
ttgatattcg aagttaaggt cagctggcgc cggtcccgcg g                           41


<210> 14
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 14
tgaccttaac ttcgaa                                                       16


<210> 15
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (6)..(6)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (7)..(7)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (11)..(11)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (12)..(12)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (16)..(16)
<223> 2,6-diaminopurine

<400> 15
tgaccttaac ttcgaa                                                       16


<210> 16
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (3)..(3)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (6)..(6)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (7)..(7)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (8)..(8)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (9)..(9)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (11)..(11)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (12)..(12)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (15)..(15)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (16)..(16)
<223> 2,6-diaminopurine

<400> 16
tgaccttaac ttcgaa                                                       16


<210> 17
<211> 69
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 17
ttcagaggat aaaggtaagc aatgggttca gtcacttggt cagagtattg atattcgaag       60

ttaaggtca                                                               69


<210> 18
<211> 59
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (1)..(19)
<223> 2'-O-methyl nucleotide

<400> 18
ccgcgggacc ggcgccagcg caccatcgat aacaaaggca tgtccgccta ctttaccga        59


<210> 19
<211> 39
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (6)..(6)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (11)..(11)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (15)..(15)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (18)..(18)
<223> 2-thiothymine

<400> 19
gcctttgtta tcgatggtgc gctggcgccg gtcccgcgg                              39


<210> 20
<211> 16
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (2)..(2)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (5)..(5)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (9)..(9)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (14)..(14)
<223> 2,6-diaminopurine

<400> 20
caccatcgat aacaaa                                                       16


<210> 21
<211> 61
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<220>
<223> Description of Combined DNA/RNA Molecule: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (1)..(19)
<223> 2'-O-methyl nucleotide

<400> 21
cggccgcggc cagggcgccg accaaatcaa ccgtagcgac tttagcaaac aagattggga       60

a                                                                       61


<210> 22
<211> 37
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (8)..(8)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (9)..(9)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (12)..(12)
<223> 2-thiothymine

<220>
<221> modified_base
<222> (14)..(14)
<223> 2-thiothymine

<400> 22
gctacggttg atttggtcgg cgccctggcc gcggccg                                37


<210> 23
<211> 15
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (4)..(4)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (6)..(6)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (9)..(9)
<223> 2,6-diaminopurine

<220>
<221> modified_base
<222> (10)..(10)
<223> 2,6-diaminopurine

<400> 23
accaaatcaa ccgta                                                        15


<210> 24
<211> 26
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (5)..(5)
<223> stabilized deoxythymidine

<220>
<221> modified_base
<222> (14)..(14)
<223> riboadenosine

<220>
<221> modified_base
<222> (23)..(23)
<223> stabilized deoxythymidine

<400> 24
ctggttggtt ttgagataat tctttg                                            26


