                         SEQUENCE LISTING

<110>  Stichting Radboud universitair medisch centrum
 
<120>  RNA Profiling of the microbiome

<130>  P6103202PCT

<150>  EP21176843.7
<151>  2021-05-31

<160>  91    

<170>  PatentIn version 3.5

<210>  1
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (26)..(33)
<223>  n is a, c, g, or t

<400>  1
agtcactatc cagaccaaag cgcccnnnnn nnncttcagc ttcccgatat ccgacggtag       60

tgtcagatgg aaaagatggt ct                                                82


<210>  2
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (27)..(34)
<223>  n is a, c, g, or t

<400>  2
ggatggtggt gcatggccgt tcttagnnnn nnnncttcag cttcccgata tccgacggta       60

gtgtagaaat tgacggaagg gca                                               83


<210>  3
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (24)..(31)
<223>  n is a, c, g, or t

<400>  3
tgcgcctaca agcggtcgga gctnnnnnnn ncttcagctt cccgatatcc gacggtagtg       60

tttctgcgtg aatctgccgg g                                                 81


<210>  4
<211>  78
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (20)..(27)
<223>  n is a, c, g, or t

<400>  4
gcttaacaca tgcaagtcgn nnnnnnnctt cagcttcccg atatccgacg gtagtgttaa       60

taggtatttg aataaggt                                                     78


<210>  5
<211>  78
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (21)..(28)
<223>  n is a, c, g, or t

<400>  5
tgaccttatt caaataccta nnnnnnnnct tcagcttccc gatatccgac ggtagtgttc       60

gacttgcatg tgttaagc                                                     78


<210>  6
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (25)..(32)
<223>  n is a, c, g, or t

<400>  6
cgtaacaagg tagccgtacc ggaannnnnn nncttcagct tcccgatatc cgacggtagt       60

gtaatgcgtt cccgggcctt gta                                               83


<210>  7
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (20)..(27)
<223>  n is a, c, g, or t

<400>  7
gtagtcatat gcttgtctcn nnnnnnnctt cagcttcccg atatccgacg gtagtgttgg       60

ctagttgtag agagtagtaa aa                                                82


<210>  8
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (28)..(35)
<223>  n is a, c, g, or t

<400>  8
acggcccacc aaagcgacga tcagtagnnn nnnnncttca gcttcccgat atccgacggt       60

agtgtctggg ggataacagt tag                                               83


<210>  9
<211>  79
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (22)..(29)
<223>  n is a, c, g, or t

<400>  9
caaggtttcc gtaggtgaac cnnnnnnnnc ttcagcttcc cgatatccga cggtagtgta       60

ccgcccgtcg ctactaccg                                                    79


<210>  10
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (21)..(28)
<223>  n is a, c, g, or t

<400>  10
ggtggtgcat ggctgtcgtc nnnnnnnnct tcagcttccc gatatccgac ggtagtgtaa       60

ttgacggggc cccgcacaag c                                                 81


<210>  11
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (23)..(30)
<223>  n is a, c, g, or t

<400>  11
cggcggccgt aactataacg gtnnnnnnnn cttcagcttc ccgatatccg acggtagtgt       60

cccaggcaac tgtttatcaa aa                                                82


<210>  12
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (24)..(31)
<223>  n is a, c, g, or t

<400>  12
gtgggcagtt tgactggggc ggtnnnnnnn ncttcagctt cccgatatcc gacggtagtg       60

ttgtacagga taggtgggag a                                                 81


<210>  13
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (29)..(36)
<223>  n is a, c, g, or t

<400>  13
gcaaggttga aactcaaagg aattgacgnn nnnnnncttc agcttcccga tatccgacgg       60

tagtgttagc aaacaggatt aga                                               83


<210>  14
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (29)..(36)
<223>  n is a, c, g, or t

<400>  14
gataggttgg gggtgtacgc gcagtaatnn nnnnnncttc agcttcccga tatccgacgg       60

tagtgtgttg tcacgccagt gg                                                82


<210>  15
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (26)..(33)
<223>  n is a, c, g, or t

<400>  15
cactgttttg attttttaca ccttgnnnnn nnncttcagc ttcccgatat ccgacggtag       60

tgtttacgcg ttactcaccc gtc                                               83


<210>  16
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (30)..(37)
<223>  n is a, c, g, or t

<400>  16
ggttttctgc gttcagcctg agaagggggn nnnnnnnctt cagcttcccg atatccgacg       60

gtagtgtatg gggcaaaaga cgt                                               83


<210>  17
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (24)..(31)
<223>  n is a, c, g, or t

<400>  17
gtggttatcc tgcgttgatg cctnnnnnnn ncttcagctt cccgatatcc gacggtagtg       60

tccacaagaa cacatcatac aa                                                82


<210>  18
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (24)..(31)
<223>  n is a, c, g, or t

<400>  18
gtaaggtgca gaaagaatat gcannnnnnn ncttcagctt cccgatatcc gacggtagtg       60

tctctgtgtt agtttaaagt gca                                               83


<210>  19
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (28)..(35)
<223>  n is a, c, g, or t

<400>  19
ggggagtacg gccgcaaggt tgaaactnnn nnnnncttca gcttcccgat atccgacggt       60

agtgtgcgaa agcgtgggta g                                                 81


<210>  20
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (25)..(32)
<223>  n is a, c, g, or t

<400>  20
aatgaaaacg tccttggcaa atgcnnnnnn nncttcagct tcccgatatc cgacggtagt       60

gttgatttct cgtaaggtgc cg                                                82


<210>  21
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (21)..(28)
<223>  n is a, c, g, or t

<400>  21
gcacgagctg acgacaacca nnnnnnnnct tcagcttccc gatatccgac ggtagtgttg       60

ctgatttgac gtcatcccca cct                                               83


<210>  22
<211>  78
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (25)..(32)
<223>  n is a, c, g, or t

<400>  22
gggggattag ctcagttggc tagannnnnn nncttcagct tcccgatatc cgacggtagt       60

gtggaaggtg cggctgga                                                     78


<210>  23
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (21)..(28)
<223>  n is a, c, g, or t

<400>  23
ccctgtcaca gaactgccgc nnnnnnnnct tcagcttccc gatatccgac ggtagtgttc       60

caaaggaact cctaccttac gcc                                               83


<210>  24
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (27)..(34)
<223>  n is a, c, g, or t

<400>  24
gactctaaat atttaatcaa atacctnnnn nnnncttcag cttcccgata tccgacggta       60

gtgtccttca acaggacatc a                                                 81


<210>  25
<211>  78
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (21)..(28)
<223>  n is a, c, g, or t

<400>  25
tggaacagga cgtcatagag nnnnnnnnct tcagcttccc gatatccgac ggtagtgtaa       60

accaaccggg attgcctt                                                     78


<210>  26
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (24)..(31)
<223>  n is a, c, g, or t

<400>  26
gcatgatgat ttgacgtcat cccnnnnnnn ncttcagctt cccgatatcc gacggtagtg       60

tcttcatgta gtcgagttgc aga                                               83


<210>  27
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (27)..(34)
<223>  n is a, c, g, or t

<400>  27
ggagagcgcc tgctttgcac gcaggannnn nnnncttcag cttcccgata tccgacggta       60

gtgtaagtcg taacaaggta gcc                                               83


<210>  28
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (30)..(37)
<223>  n is a, c, g, or t

<400>  28
cagcgttcgt cctgagccag gatcaaactn nnnnnnnctt cagcttcccg atatccgacg       60

gtagtgttcc aatagttatc ccc                                               83


<210>  29
<211>  83
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (30)..(37)
<223>  n is a, c, g, or t

<400>  29
gatacatagc cgacctgaga gggtgatcgn nnnnnnnctt cagcttcccg atatccgacg       60

gtagtgtagc taataccgca taa                                               83


<210>  30
<211>  81
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (26)..(33)
<223>  n is a, c, g, or t

<400>  30
tttgatcctg gctcaggacg aacgcnnnnn nnncttcagc ttcccgatat ccgacggtag       60

tgtttgaaaa ctgaacaaga c                                                 81


<210>  31
<211>  82
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct


<220>
<221>  misc_feature
<222>  (26)..(33)
<223>  n is a, c, g, or t

<400>  31
gccacggcta actacgtgcc agcagnnnnn nnncttcagc ttcccgatat ccgacggtag       60

tgtggacgaa agtctgacgg ag                                                82


<210>  32
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  32
cagatggaaa agatggtct                                                    19


<210>  33
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  33
agtcactatc cagaccaaag cgccc                                             25


<210>  34
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  34
agaaattgac ggaagggca                                                    19


<210>  35
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  35
ggatggtggt gcatggccgt tcttag                                            26


<210>  36
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  36
ttctgcgtga atctgccggg                                                   20


<210>  37
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  37
tgcgcctaca agcggtcgga gct                                               23


<210>  38
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  38
aatgcgttcc cgggccttgt a                                                 21


<210>  39
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  39
cgtaacaagg tagccgtacc ggaa                                              24


<210>  40
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  40
tggctagttg tagagagtag taaaa                                             25


<210>  41
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  41
gtagtcatat gcttgtctc                                                    19


<210>  42
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  42
ctgggggata acagttag                                                     18


<210>  43
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  43
acggcccacc aaagcgacga tcagtag                                           27


<210>  44
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  44
accgcccgtc gctactaccg                                                   20


<210>  45
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  45
caaggtttcc gtaggtgaac c                                                 21


<210>  46
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  46
aattgacggg gccccgcaca agc                                               23


<210>  47
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  47
ggtggtgcat ggctgtcgtc                                                   20


<210>  48
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  48
cccaggcaac tgtttatcaa aa                                                22


<210>  49
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  49
cggcggccgt aactataacg gt                                                22


<210>  50
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  50
tgtacaggat aggtgggaga                                                   20


<210>  51
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  51
gtgggcagtt tgactggggc ggt                                               23


<210>  52
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  52
tagtgtgttg tcacgccagt gg                                                22


<210>  53
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  53
gcaaggttga aactcaaagg aattgacg                                          28


<210>  54
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  54
gttgtcacgc cagtgg                                                       16


<210>  55
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  55
gataggttgg gggtgtacgc gcagtaat                                          28


<210>  56
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  56
ttacgcgtta ctcacccgtc                                                   20


<210>  57
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  57
cactgttttg attttttaca cctt                                              24


<210>  58
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  58
atggggcaaa agacgt                                                       16


<210>  59
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  59
ggttttctgc gttcagcctg agaaggggg                                         29


<210>  60
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  60
ccacaagaac acatcataca a                                                 21


<210>  61
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  61
gtggttatcc tgcgttgatg cct                                               23


<210>  62
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  62
ctctgtgtta gtttaaagtg ca                                                22


<210>  63
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  63
gtaaggtgca gaaagaatat gca                                               23


<210>  64
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  64
gcgaaagcgt gggtag                                                       16


<210>  65
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  65
ggggagtacg gccgcaaggt tgaaact                                           27


<210>  66
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  66
tgatttctcg taaggtgccg                                                   20


<210>  67
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  67
aatgaaaacg tccttggcaa atgc                                              24


<210>  68
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  68
tgctgatttg acgtcatccc cacct                                             25


<210>  69
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  69
gcacgagctg acgacaacca                                                   20


<210>  70
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  70
ggaaggtgcg gctgga                                                       16


<210>  71
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  71
gggggattag ctcagttggc taga                                              24


<210>  72
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  72
tccaaaggaa ctcctacctt acgcc                                             25


<210>  73
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  73
ccctgtcaca gaactgccgc                                                   20


<210>  74
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  74
ccttcaacag gacatca                                                      17


<210>  75
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  75
gactctaaat atttaatcaa atacct                                            26


<210>  76
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  76
aaaccaaccg ggattgcctt                                                   20


<210>  77
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  77
tggaacagga cgtcatagag                                                   20


<210>  78
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  78
cttcatgtag tcgagttgca ga                                                22


<210>  79
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  79
gcatgatgat ttgacgtcat ccc                                               23


<210>  80
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  80
aagtcgtaac aaggtagcc                                                    19


<210>  81
<211>  26
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  81
ggagagcgcc tgctttgcac gcagga                                            26


<210>  82
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  82
tccaatagtt atcccc                                                       16


<210>  83
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  83
cagcgttcgt cctgagccag gatcaaact                                         29


<210>  84
<211>  16
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  84
agctaatacc gcataa                                                       16


<210>  85
<211>  29
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  85
gatacatagc cgacctgaga gggtgatcg                                         29


<210>  86
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  86
ttgaaaactg aacaagac                                                     18


<210>  87
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  87
tttgatcctg gctcaggacg aacgc                                             25


<210>  88
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  88
ggacgaaagt ctgacggag                                                    19


<210>  89
<211>  25
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  89
gccacggcta actacgtgcc agcag                                             25


<210>  90
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  90
tcgacttgca tgtgttaagc                                                   20


<210>  91
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Synthetic construct

<400>  91
tgaccttatt caaataccta                                                   20


