                               SEQUENCE LISTING

<110> THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR 
      UNIVERSITY
 
<120> COMPOSITIONS AND METHODS FOR EFFICIENT RETRON PRODUCTION AND 
      GENETIC EDITING

<130> 079445-1330535-010310PC

<140> PCT/US2022/073129
<141> 2022-06-23

<150> 63/214,197
<151> 2021-06-23

<160> 59    

<170> PatentIn version 3.5

<210> 1
<211> 71
<212> DNA
<213> Canis lupus familiaris

<400> 1
cggggccaca gcaaaagtgt tcacgtcatg gcccctgtca gattctggtg aatctgcaaa       60

ttctgctgtg t                                                            71


<210> 2
<211> 72
<212> DNA
<213> Felis catus

<400> 2
cagggaccac agcagaagtt tcacatcgtg gcccctgtca gatgccagtg aatctgtaaa       60

tttctgctgt gt                                                           72


<210> 3
<211> 71
<212> DNA
<213> Ailuropoda melanoleuca

<400> 3
cggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcaaa       60

ttctgctgtg t                                                            71


<210> 4
<211> 72
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      wild type elephant sequence

<400> 4
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctac gc                                                           72


<210> 5
<211> 66
<212> DNA
<213> Pongo abelii

<400> 5
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcgaa       60

ttctgc                                                                  66


<210> 6
<211> 66
<212> DNA
<213> Microcebus murinus

<400> 6
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcgaa       60

ttctgc                                                                  66


<210> 7
<211> 66
<212> DNA
<213> Tupaia belangeri

<400> 7
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcgaa       60

ttctgc                                                                  66


<210> 8
<211> 72
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      wild type rabbit sequence

<400> 8
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctgc at                                                           72


<210> 9
<211> 72
<212> DNA
<213> Homo sapiens

<400> 9
agggggccac agcagaagcg ttcacgtcgc agcccctgtc agattctggt gaatctgcga       60

attctgctgt at                                                           72


<210> 10
<211> 72
<212> DNA
<213> Pan troglodytes

<400> 10
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctgt at                                                           72


<210> 11
<211> 72
<212> DNA
<213> Macaca mulatta

<400> 11
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctgt at                                                           72


<210> 12
<211> 70
<212> DNA
<213> Macaca mulatta

<400> 12
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctgt                                                              70


<210> 13
<211> 66
<212> DNA
<213> Sorex araneus

<400> 13
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcgaa       60

ttctgc                                                                  66


<210> 14
<211> 72
<212> DNA
<213> Mus sp.

<400> 14
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggc gaatctgcga       60

attctgctgt ac                                                           72


<210> 15
<211> 71
<212> DNA
<213> Rattus sp.

<400> 15
aggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcgaa       60

ttctgctgta c                                                            71


<210> 16
<211> 69
<212> DNA
<213> Equus caballus

<400> 16
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggtg aatctgcgaa       60

ttctgctgt                                                               69


<210> 17
<211> 70
<212> DNA
<213> Lama pacos

<400> 17
agggggccac agcagaagcg ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctgt                                                              70


<210> 18
<211> 72
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      wild type opossum sequence

<400> 18
agggggccat agcagaagcg ttcacgtcgc ggcccctgtc agattcatag gaatctgcga       60

attctgctgc ac                                                           72


<210> 19
<211> 72
<212> DNA
<213> Macropus eugenii

<400> 19
agggggccat agcagaagcg ttcacgtcgc ggcccctgtc agattcatat gaatctgcga       60

attctgctgc ac                                                           72


<210> 20
<211> 71
<212> DNA
<213> Monodelphis domestica

<400> 20
agggggccat agcagaagcg ttcacgtcgc ggcccctgtc agattcatag gaatctgcga       60

attctgctga t                                                            71


<210> 21
<211> 66
<212> DNA
<213> Cavia porcellus

<400> 21
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctgatg aatctgcgaa       60

ttctgc                                                                  66


<210> 22
<211> 66
<212> DNA
<213> Ochotona princeps

<400> 22
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctgatg aatctgcgaa       60

ttctgc                                                                  66


<210> 23
<211> 72
<212> DNA
<213> Dasypus novemcinctus

<400> 23
atggggccac agcagaagca ttcatgttgc agcccttgtg agattcaagt gaatctgtga       60

attctgctgc gt                                                           72


<210> 24
<211> 72
<212> DNA
<213> Choloepus hoffmanni

<400> 24
acggggccac agcagaagca ttcatgtcgc agcccctgtc agattctggt gaatctgcgg       60

attctgctgt gt                                                           72


<210> 25
<211> 60
<212> DNA
<213> Myotis lucifugus

<400> 25
gggggcctca gcagacacat cacagtcccc atcagattct ggtgaatccg tgaattttgc       60


<210> 26
<211> 72
<212> DNA
<213> Bos sp.

<400> 26
aaggggccag agcagaagca ttcacgtcgc ggcccctgtc agattctggt gaatctgcga       60

attctgctgt ca                                                           72


<210> 27
<211> 69
<212> DNA
<213> Callithrix jacchus

<400> 27
ggggggcaca gcagaagcat tcacttcgtg gcccctgtca gattctagtg aatctgcgaa       60

ttctgctgt                                                               69


<210> 28
<211> 70
<212> DNA
<213> Tursiops truncatus

<400> 28
aaggggctac agcagaagcg ttcacattgc agcccctgtc agattctggt gaatctgcga       60

attctgctgt                                                              70


<210> 29
<211> 71
<212> DNA
<213> Echinops telfairi

<400> 29
acagggccac cccaaagcgt tcacattgtg gcccctgtca gattctggta aatctgcgag       60

ttctgctata t                                                            71


<210> 30
<211> 70
<212> DNA
<213> Sus scrofa

<400> 30
tggcagccac agtagaagca ttcacattgt ggtccatgtc agattctggt gaatttgcaa       60

attctgctgt                                                              70


<210> 31
<211> 70
<212> DNA
<213> Dipodomys ordii

<400> 31
acagagccgt tacagaagtg ttcatatcat ggtccctgtc agattctggt gaatctgaaa       60

attctgctgt                                                              70


<210> 32
<211> 69
<212> DNA
<213> Pteropus vampyrus

<400> 32
aggggccgcg acgtgaacgc ttctgctgtg gcccctgtta tcctcttgta tttgaaaact       60

gaacaacaa                                                               69


<210> 33
<211> 49
<212> DNA
<213> Gorilla gorilla

<400> 33
aggggccgcg acgtgaacgc ttctgctgtg gccccctgtt atccccttg                   49


<210> 34
<211> 82
<212> RNA
<213> Anopheles gambiae

<400> 34
ggcugacaaa auccuuuccc aaccuccacg uggugucggc uggauaaugc auuagaaaug       60

uugcauuuac caacugggaa gg                                                82


<210> 35
<211> 181
<212> RNA
<213> Anopheles gambiae

<400> 35
guucuguaaa cgggguugga uccgacucuc auaggcucuc caacccaacu ccuacucaau       60

acguccucgu cguacagaac gguaacaugu uuuccgaaca uccgcgcuug gguauacgag      120

uauacaccuu acccaacccu cgccaacggg gaggauggaa aacauggcua aauugagagg      180

g                                                                      181


<210> 36
<211> 67
<212> RNA
<213> Petromyzon marinus

<400> 36
ggggaagaag augacaaccu ucucgcgguc uucccuguua cguguguaga cacaacgaau       60

gucauca                                                                 67


<210> 37
<211> 81
<212> RNA
<213> Branchiostoma floridae

<400> 37
gacacccagg cagaugaccu ccucguuggu gggugucggu aauguuguca gucacaggca       60

acagcuaacg aucugccaug u                                                 81


<210> 38
<211> 69
<212> RNA
<213> Branchiostoma floridae

<400> 38
ggggaccaua gaaggagcgu ucucgucgcg gucccuguca ggcucguccu gcgaauccuu       60

cuaccacau                                                               69


<210> 39
<211> 72
<212> RNA
<213> Strongylocentrotus purpuratus

<400> 39
gggggccauu gaaggagcgu ucacgucgcg gucccuguca gaugaaaauc ugcgaauccu       60

ucaacuacac ua                                                           72


<210> 40
<211> 71
<212> RNA
<213> Strongylocentrotus purpuratus

<400> 40
gggguucaug uugucgaccu ucacguggug agcccuguca acugacugcu gucaggcuaa       60

cagacaacca u                                                            71


<210> 41
<211> 72
<212> RNA
<213> Strongylocentrotus purpuratus

<400> 41
gacacugagu gagaaacguc cccgucguag ugucgguaau gcguuguuuc aacguagcca       60

auucucacau ua                                                           72


<210> 42
<211> 80
<212> RNA
<213> Strongylocentrotus purpuratus

<400> 42
ggguugcaca ggagcagggu ccacgucccg caaccugggu gucaugauuu cuugaagcca       60

ugauagcuga ugcuccuaca                                                   80


<210> 43
<211> 111
<212> RNA
<213> Pristionchus pacificus

<400> 43
gacucgcuug acuguucacc uccccguggu gcgaguugga cacccaccac ucgcauucuu       60

caccuauugu uuaauugugc uugugguggg ugacugagaa acagucccaa c               111


<210> 44
<211> 108
<212> RNA
<213> Caenorhabditis japonica

<400> 44
gguuugcuug uuggauaccu ccucgcggug caaacugggc aaugcugugc uccuacgaca       60

ggggaaauug gacaccacug uuaggcacag uagccaaaau ccacucuu                   108


<210> 45
<211> 75
<212> RNA
<213> Faecalibacterium prausnitzii

<400> 45
gcugcucaua uaugcuaccu cuccguggug agcaguaggc aacggaucuc uauccggcua       60

aagcauguga uuguc                                                        75


<210> 46
<211> 71
<212> RNA
<213> Invertebrate iridescent virus 6

<400> 46
gaggugcuug uagauaaccu ccacgauggu gcaccuuggg caacacaaaa guggcaaauc       60

aucuacauua a                                                            71


<210> 47
<211> 80
<212> RNA
<213> Diplonema papillatum

<400> 47
gagggacaag aaucugaccu gcaccuccuc gugguguccc ucggaaacgu gcucaacgcg       60

cggccgacgc aggcagucuu                                                   80


<210> 48
<211> 90
<212> RNA
<213> Trichoderma atroviride

<400> 48
ggacaacgaa aucggccucu gcaaccucca cgugguguug ucugggaacc ugaucaaaac       60

uaccgaguuu gaucaggcca augcagagac                                        90


<210> 49
<211> 76
<212> DNA
<213> Unknown

<220>
<223> Description of Unknown: 
      CPEB3 sequence

<400> 49
gggggccaca gcagaagcgt tcacgtcgcg gcccctgtca gattctggcg aatctgcgaa       60

ttctgctgta catttt                                                       76


<210> 50
<211> 84
<212> DNA
<213> Hepacivirus D

<400> 50
ggccggcatg gtcccagcct cctcgctggc gccggctggg caacattccg aggggaccgt       60

cccctcggta atggcgaatg ggac                                              84


<210> 51
<211> 86
<212> DNA
<213> Hepacivirus D

<400> 51
gggtcggcat ggcatctcca cctcctcgcg gtccgacctg ggcatccgaa ggaggacgca       60

cgtccactcg gatggctaag ggagag                                            86


<210> 52
<211> 71
<212> DNA
<213> Hepacivirus D

<400> 52
gatggccggc atggtcccag cctcctcgct ggcgccggct gggcaacacc ttcgggtggc       60

gaatgggact t                                                            71


<210> 53
<211> 49
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide


<220>
<221> modified_base
<222> (1)..(6)
<223> a, c, t, g, unknown or other

<220>
<221> modified_base
<222> (44)..(49)
<223> a, c, t, g, unknown or other

<400> 53
nnnnnnctga tgagtccgtg aggacgaaac gagtaagctc gtcnnnnnn                   49


<210> 54
<211> 72
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 54
agctgtcacc ggatgtgctt tccggtctga tgagtccgtg aggacgaaac agcctctaca       60

aattttgttt aa                                                           72


<210> 55
<211> 82
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 55
atgcgcaccc ttagcgagag gtttatcatt aaggtcaacc tctggatgtt gtttcggcat       60

cctgcattga atctgagtta ct                                                82


<210> 56
<211> 23
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 56
tctgagttac tgtctgtttt cct                                               23


<210> 57
<211> 34
<212> DNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 57
aggaaacccg tttcttctga cgtaagggtg cgca                                   34


<210> 58
<211> 22
<212> RNA
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      oligonucleotide

<400> 58
guucacugcc guauaggcag cu                                                22


<210> 59
<211> 4
<212> PRT
<213> Artificial Sequence

<220>
<223> Description of Artificial Sequence: Synthetic
      peptide

<400> 59
Tyr Ala Asp Asp 
1               


