                         SEQUENCE LISTING

<110>  Arete Biosciences, LLC
 
<120>  METHODS AND REAGENTS FOR ANALYZING NUCLEIC ACIDS

<130>  1010131.005

<150>  63/217507
<151>  2021-07-01

<150>  63/217521
<151>  2021-07-01

<160>  98    

<170>  PatentIn version 3.5

<210>  1
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer CT_CP-cap840R

<400>  1
cttcgagcaa ccgctgtgac ggagtacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  2
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer CT_CP-cap881R

<400>  2
ctcagactcc gacataatga aggtcacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  3
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer CT_CP-cap560F

<400>  3
cctccttgga gcattgtctg ggcgatcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  4
<211>  56
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer CT_CP-cap505F

<400>  4
gctcttttag gaaggatgct gtttgcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa           56


<210>  5
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer NG_ISNgo2-328R

<400>  5
accggcaata ctgcgctatc agttttgcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa         58


<210>  6
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer NG_ISNgo2-613F

<400>  6
tgaccgcagc cgtattgttt catcatcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  7
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-F3

<400>  7
ctgcttgaga gaacgtgcg                                                    19


<210>  8
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-B3

<400>  8
ctctgaagtc ttaagcttgg agat                                              24


<210>  9
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-FIP

<400>  9
tcggtcaacg aagaggtttt gcgatttgcc ttaaccccac c                           41


<210>  10
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-BIP

<400>  10
aatcctcttt tctgtctgac ggtcagattt gtttccaaca agctacc                     47


<210>  11
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-LF

<400>  11
ttttgtcttc gtaactcgct                                                   20


<210>  12
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-LB

<400>  12
tcttaagctg ggagaaagaa at                                                22


<210>  13
<211>  27
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer capN_358R

<400>  13
cagcttctgg cccagttcct aggtagt                                           27


<210>  14
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer capN_886R

<400>  14
aaaaatttcc ttgtctgatt agttcctggt ccc                                    33


<210>  15
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19-N2-F3

<400>  15
acacaagctt tcggcagac                                                    19


<210>  16
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19-N2-B3

<400>  16
ccaatttgat ggcacctgtg                                                   20


<210>  17
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19-N2-FIP1

<400>  17
tgtgcaattt gcggccaatg tttggtccag aacaaaccca ag                          42


<210>  18
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19-N2-BIP

<400>  18
ccagcgcttc agcgttcttc gtaggtcaac cacgttcccg                             40


<210>  19
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19-N2-LF1

<400>  19
ctgattagtt cctggtcccc a                                                 21


<210>  20
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19-N2-LB1

<400>  20
aatgtcgcgc attggcatgg                                                   20


<210>  21
<211>  17
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer N_653F

<400>  21
ctcttgcttt gctgctg                                                      17


<210>  22
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer N_852R

<400>  22
tccttgggtt tgttctgg                                                     18


<210>  23
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer F370

<400>  23
acgagcaata caggctttca                                                   20


<210>  24
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer R479

<400>  24
ttggccgctt cttcatctt                                                    19


<210>  25
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer nsp1_88R

<400>  25
aaaaatcacg tacgagcacg tcgcgaacct gta                                    33


<210>  26
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer nsp1_350R

<400>  26
aaaaatgcca ctggtatttc gcccacatga gg                                     32


<210>  27
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer 145F

<400>  27
ggcacttgtg gcttagtaga a                                                 21


<210>  28
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer 270R

<400>  28
tgctaccagc tcaaccataa c                                                 21


<210>  29
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBkatG_capF3

<400>  29
aaaaaatggg tcttaccgaa agtgtgaccg cc                                     32


<210>  30
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBkatG_capR2

<400>  30
aaaaagcatc gaggtcgtat ggacgaacac cc                                     32


<210>  31
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-F2

<400>  31
cgtccttggc ggtgtatt                                                     18


<210>  32
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-KatG-R2

<400>  32
ggacaacagt ttcctcgaga t                                                 21


<210>  33
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-1645F

<400>  33
tgtgccgcca tagagaaag                                                    19


<210>  34
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-1750F

<400>  34
aggattccac gtcggtttg                                                    19


<210>  35
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-2116F

<400>  35
gcgcttgtcg aggtctatg                                                    19


<210>  36
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-2210F

<400>  36
aacctgtcga ggttcatcac                                                   20


<210>  37
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-3333F

<400>  37
accgaagacg gcaattgat                                                    19


<210>  38
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-3453R

<400>  38
gttacccatc cgcttccaat a                                                 21


<210>  39
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-4231F

<400>  39
tgatcaactg tgctggtctg                                                   20


<210>  40
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-4337R

<400>  40
cagttgctct agacctggat tg                                                22


<210>  41
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-5268F

<400>  41
tggcaagcag tgtgagtaag                                                   20


<210>  42
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer TB-katG-5353R

<400>  42
cgcacactag agccacaaa                                                    19


<210>  43
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBahpC_capR

<400>  43
aaaaagcgag cggtggtcgg aagccggtct cg                                     32


<210>  44
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBahpC_capF

<400>  44
aaaaagtggc gggtggtgtt cttttggccg aa                                     32


<210>  45
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBembB_capR

<400>  45
aaaaagcccg acgggtcctt gagcccgacg aag                                    33


<210>  46
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBembB_capF

<400>  46
aaaaactcac accggcggcg ctggccgtcg tt                                     32


<210>  47
<211>  33
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  capture oligomer TBinhA_capR

<400>  47
aaaaagcggg tgtattgacg ccctacgaat tgc                                    33


<210>  48
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBinhA_capF

<400>  48
aaaaagcaca gcggctggct gccgacggcc ac                                     32


<210>  49
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBkatG_capF3

<400>  49
aaaaaatggg tcttaccgaa agtgtgaccg cc                                     32


<210>  50
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBkatG_capR2

<400>  50
aaaaagcatc gaggtcgtat ggacgaacac cc                                     32


<210>  51
<211>  31
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBpncA_CapR1

<400>  51
aaaaatccca gtctggacac gtcggcaatc g                                      31


<210>  52
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBpncA_CapF1

<400>  52
aaaaaccttg gttgccacga cgtgatggta gt                                     32


<210>  53
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBrpoB_capF4

<400>  53
aaaaagcgat cacaccgcag acgttgatca ac                                     32


<210>  54
<211>  32
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TBrpoB_capR3

<400>  54
aaaaaaagtg gtcgatgtcg tcggtttcca cc                                     32


<210>  55
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TB-embBpr-CapR6

<400>  55
aaaaacggtt aagggcggtg aggatgcg                                          28


<210>  56
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer TB-embBpr-CapF6

<400>  56
aaaaaatcgc acgcctagca gccgtcgt                                          28


<210>  57
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-111_TB-rpoB-dis2_F

<400>  57
gacgagtgca aagacaagga                                                   20


<210>  58
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-113_TB-rpoB-dis3_F

<400>  58
tcgtctgagg tggactacat                                                   20


<210>  59
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-114_TB-rpoB-dis3_R

<400>  59
gctccaggaa gggaatcatc                                                   20


<210>  60
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-115_TB-rpoB-dis4_F

<400>  60
cgtgtgtatg tggctcagaa                                                   20


<210>  61
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-116_TB-rpoB-dis4_R

<400>  61
ggaacggcat gtcctcaa                                                     18


<210>  62
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-117_TB-rpoB-dis5_F

<400>  62
tgctcgacgt caacttcttc                                                   20


<210>  63
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-118_TB-rpoB-dis5_R

<400>  63
gttgatcgtc tccggcttt                                                    19


<210>  64
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-119_TB-rpoB_dis6_F

<400>  64
agatcgaggc cgagctatt                                                    19


<210>  65
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-120_TB-rpoB-dis6_R

<400>  65
tgcttgttga cgaacggata a                                                 21


<210>  66
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-121_TB-rpoB-dis7_F

<400>  66
atcccgtcgt atgaggatca                                                   20


<210>  67
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  PCR primer 19-122_TB-rpoB-dis7_R

<400>  67
tagtcgctgt agccgtagt                                                    19


<210>  68
<211>  18
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer 19-075_TB-rpoB-F3

<400>  68
cacaccgcag acgttgat                                                     18


<210>  69
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer 19-076_TB-rpoB-R3

<400>  69
ggttgttctg gtccatgaat tg                                                22


<210>  70
<211>  30
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer EC-uidA-754R

<400>  70
gttcatagag ataaccttca cccggttgcc                                        30


<210>  71
<211>  28
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture oligomer EC-uidA-887F

<400>  71
ttggtcgtca tgaagatgcg gatttgcg                                          28


<210>  72
<211>  23
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer EC_uidAF

<400>  72
ccaaaagcca gacagagtgt gat                                               23


<210>  73
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  qPCR primer EC_uidAR

<400>  73
agccagtaaa gtagaacggt ttgt                                              24


<210>  74
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19N-F3_501F

<400>  74
gccaaaaggc ttctacgca                                                    19


<210>  75
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19N-B3_740R

<400>  75
gtgacagttt ggccttgttg                                                   20


<210>  76
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19N-FIP_539F

<400>  76
tcccctactg ctgcctggag gtcaagcctc ttctcgttcc                             40


<210>  77
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19N-BIP_720R

<400>  77
caatggcggt gatgctgctc tttgttggcc tttaccagac a                           41


<210>  78
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19N-LF_579R

<400>  78
actgttgcga ctacgtgatg                                                   20


<210>  79
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer Cv19N-LB_677F

<400>  79
gattgaacca gcttgagagc                                                   20


<210>  80
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe CapN_358R

<400>  80
cagcttctgg cccagttcct aggtagtaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  81
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe CapN_886R

<400>  81
tttccttgtc tgattagttc ctggtcccaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa         58


<210>  82
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Cv19-N2-F3

<400>  82
acacaagctt tcggcagac                                                    19


<210>  83
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Cv19-N2-B3

<400>  83
ccaatttgat ggcacctgtg                                                   20


<210>  84
<211>  42
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Bio-Cv19-N2-FIP1

<400>  84
tgtgcaattt gcggccaatg tttggtccag aacaaaccca ag                          42


<210>  85
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe FAM-Cv19-N2-BIP

<400>  85
ccagcgcttc agcgttcttc gtaggtcaac cacgttcccg                             40


<210>  86
<211>  21
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Cv19-N2-LF1

<400>  86
ctgattagtt cctggtcccc a                                                 21


<210>  87
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Cv19-N2-LB1

<400>  87
aatgtcgcgc attggcatgg                                                   20


<210>  88
<211>  57
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Cap_N_358R

<400>  88
cagcttctgg cccagttcct aggtagtaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa          57


<210>  89
<211>  58
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Capture probe Cap_N_886R

<400>  89
tttccttgtc tgattagttc ctggtcccaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa         58


<210>  90
<211>  19
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-F3

<400>  90
ctgcttgaga gaacgtgcg                                                    19


<210>  91
<211>  24
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-B3

<400>  91
ctctgaagtc ttaagcttgg agat                                              24


<210>  92
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-FIP

<400>  92
tcggtcaacg aagaggtttt gcgatttgcc ttaaccccac c                           41


<210>  93
<211>  47
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-BIP

<400>  93
aatcctcttt tctgtctgac ggtcagattt gtttccaaca agctacc                     47


<210>  94
<211>  20
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-LoF

<400>  94
ttttgtcttc gtaactcgct                                                   20


<210>  95
<211>  22
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  LAMP primer CT-LAMP4-LoB

<400>  95
tcttaagctg ggagaaagaa at                                                22


<210>  96
<211>  14
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Oligo-dT

<400>  96
tttttttttt tttt                                                         14


<210>  97
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Modified Oligo-dT with 3' inverted dT


<220>
<221>  modified_base
<222>  (15)..(15)
<223>  3' inverted dT

<400>  97
tttttttttt ttttt                                                        15


<210>  98
<211>  15
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Modified Oligo-dT with L-DNA dT


<220>
<221>  modified_base
<222>  (15)..(15)
<223>  L-DNA dT

<400>  98
tttttttttt ttttt                                                        15


